Wall clock time and date at job start Thu Apr 9 2020 12:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36934 * 120.00319 * 2 1 4 4 H 1.07995 * 120.00122 * 202.34129 * 3 2 1 5 5 C 1.38811 * 119.99777 * 22.35319 * 3 2 1 6 6 N 1.31621 * 119.99870 * 11.32968 * 5 3 2 7 7 Si 1.86799 * 120.00115 * 191.33425 * 5 3 2 8 8 H 1.48507 * 109.46810 * 59.99813 * 7 5 3 9 9 H 1.48501 * 109.47190 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47202 * 300.00214 * 7 5 3 11 11 C 1.46506 * 119.99715 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.46890 * 269.99903 * 11 2 1 13 13 N 1.29948 * 126.28582 * 89.97509 * 12 11 2 14 14 O 1.21305 * 110.25022 * 180.02562 * 13 12 11 15 15 C 1.33650 * 109.80871 * 0.02562 * 14 13 12 16 16 C 1.50698 * 126.54790 * 179.97438 * 15 14 13 17 17 C 1.53786 * 113.61300 * 300.01999 * 16 15 14 18 18 C 1.53788 * 87.07741 * 89.11727 * 17 16 15 19 19 C 1.53776 * 87.08089 * 25.43526 * 18 17 16 20 20 N 1.31129 * 106.89767 * 0.22658 * 15 14 13 21 21 H 1.08995 * 109.47039 * 274.21398 * 1 2 3 22 22 H 1.08996 * 109.46692 * 34.21163 * 1 2 3 23 23 H 1.08998 * 109.46697 * 154.21053 * 1 2 3 24 24 H 0.96998 * 119.99729 * 179.97438 * 6 5 3 25 25 H 1.08997 * 109.47248 * 150.00057 * 11 2 1 26 26 H 1.08995 * 109.47121 * 29.99665 * 11 2 1 27 27 H 1.08999 * 112.90703 * 168.77131 * 16 15 14 28 28 H 1.09001 * 113.61318 * 334.57572 * 17 16 15 29 29 H 1.08996 * 113.61585 * 203.66992 * 17 16 15 30 30 H 1.09004 * 113.60749 * 139.98215 * 18 17 16 31 31 H 1.08996 * 113.61199 * 270.87818 * 18 17 16 32 32 H 1.09001 * 113.62296 * 89.11175 * 19 18 17 33 33 H 1.09002 * 113.61243 * 219.93302 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1690 1.2209 -0.3555 5 6 1.5340 2.3428 0.4572 6 7 0.3842 2.2689 1.0936 7 14 2.3370 4.0046 0.1692 8 1 2.4920 4.2332 -1.2900 9 1 1.4848 5.0734 0.7495 10 1 3.6723 4.0284 0.8185 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4201 13 7 1.6695 -2.4501 2.1450 14 8 2.1538 -2.6192 3.2442 15 6 3.3232 -1.9776 3.3275 16 6 4.2404 -1.9352 4.5225 17 6 3.5900 -1.3282 5.7770 18 6 3.1171 -2.7500 6.1235 19 6 4.3070 -3.2629 5.2955 20 7 3.5174 -1.3876 2.1727 21 1 -0.3633 0.0755 1.0248 22 1 -0.3632 0.8498 -0.5778 23 1 -0.3632 -0.9253 -0.4471 24 1 -0.0459 3.0774 1.4134 25 1 3.1499 -1.1383 -0.5143 26 1 1.6084 -2.0282 -0.5147 27 1 5.2192 -1.5149 4.2914 28 1 2.7751 -0.6388 5.5562 29 1 4.3089 -0.9216 6.4882 30 1 3.1891 -2.9874 7.1850 31 1 2.1466 -3.0034 5.6969 32 1 5.2220 -3.3852 5.8751 33 1 4.0715 -4.1361 4.6871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599281357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:52 Heat of formation + Delta-G solvation = 112.845414 kcal Electronic energy + Delta-G solvation = -16982.980589 eV Core-core repulsion = 14241.849721 eV Total energy + Delta-G solvation = -2741.130868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.81205 -38.83258 -36.11538 -34.60343 -31.97268 -30.81618 -27.07274 -26.34608 -25.82920 -25.74231 -23.18823 -22.07971 -20.82914 -19.05421 -17.39794 -16.70826 -16.62725 -15.99707 -15.03865 -14.86781 -13.91377 -13.62910 -13.34735 -13.16726 -12.73580 -12.47172 -11.88795 -11.70345 -11.27115 -11.07271 -10.90660 -10.81117 -10.72835 -10.54509 -10.46051 -10.36897 -10.18804 -10.06461 -9.92426 -9.14832 -8.60703 -6.93645 -5.78174 -3.25812 1.80878 3.03830 3.34703 3.39235 3.42556 3.44733 4.12461 4.47943 4.53605 4.58089 4.79406 4.84818 5.08515 5.42689 5.53716 5.57080 5.59386 5.66386 5.80395 5.83070 5.95442 5.98741 6.24831 6.28842 6.47214 6.58403 6.73380 6.81376 7.33415 7.69379 7.79266 8.31239 8.97313 9.16149 9.75447 10.23736 11.26574 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.007249 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.820544 B = 3861.646299 C = 4345.929549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.580 5.580 3 C -0.256 4.256 4 H 0.075 0.925 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.911 3.089 8 H -0.281 1.281 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.226 3.774 12 C 0.173 3.827 13 N -0.398 5.398 14 O 0.061 5.939 15 C 0.170 3.830 16 C -0.020 4.020 17 C -0.131 4.131 18 C -0.144 4.144 19 C -0.130 4.130 20 N -0.462 5.462 21 H 0.028 0.972 22 H 0.052 0.948 23 H 0.002 0.998 24 H 0.254 0.746 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -9.605 7.814 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.301 5.301 3 C -0.386 4.386 4 H 0.092 0.908 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.740 3.260 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.095 3.905 12 C -0.103 4.103 13 N -0.109 5.109 14 O 0.007 5.993 15 C -0.051 4.051 16 C -0.040 4.040 17 C -0.169 4.169 18 C -0.182 4.182 19 C -0.168 4.168 20 N -0.196 5.196 21 H 0.046 0.954 22 H 0.070 0.930 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.811 -9.502 7.248 13.289 hybrid contribution 0.361 1.102 0.308 1.200 sum 6.172 -8.400 7.556 12.874 Atomic orbital electron populations 1.20884 0.81698 0.96079 0.99569 1.44233 1.02300 1.00126 1.83486 1.19260 0.98397 0.84646 1.36258 0.90761 1.25125 0.97590 0.98910 0.97804 1.70085 1.17750 1.27460 1.39741 0.86239 0.78589 0.83147 0.78025 1.20765 1.21585 1.20736 1.19574 0.97857 0.89105 0.83986 1.28075 0.85953 0.92698 1.03547 1.74551 1.21668 1.22032 0.92698 1.85182 1.29844 1.56052 1.28223 1.27976 0.87806 0.92891 0.96475 1.20525 0.96089 0.99917 0.87508 1.22980 1.01082 0.97510 0.95352 1.22981 0.98913 0.95876 1.00411 1.22969 0.99660 0.95982 0.98182 1.71872 1.25271 1.20839 1.01592 0.95361 0.92954 0.97972 0.93550 0.90436 0.91400 0.86510 0.90597 0.88507 0.90916 0.89436 0.88637 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 9.01 59.85 0.54 4.74 16 2 N -0.58 -15.32 2.91 -182.50 -0.53 -15.85 16 3 C -0.26 -7.25 9.67 -15.06 -0.15 -7.39 16 4 H 0.07 2.06 7.84 -52.49 -0.41 1.64 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.91 -27.16 10.58 55.49 0.59 -26.57 16 7 Si 0.91 22.33 29.57 -169.99 -5.03 17.31 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.23 5.07 6.33 -5.19 -0.03 5.04 16 12 C 0.17 3.96 7.80 -156.37 -1.22 2.74 16 13 N -0.40 -8.81 12.16 30.91 0.38 -8.44 16 14 O 0.06 1.20 10.25 18.08 0.19 1.38 16 15 C 0.17 3.12 7.35 -13.05 -0.10 3.02 16 16 C -0.02 -0.26 4.49 -90.96 -0.41 -0.67 16 17 C -0.13 -1.51 7.66 -25.91 -0.20 -1.70 16 18 C -0.14 -1.48 7.73 -25.92 -0.20 -1.68 16 19 C -0.13 -1.27 7.63 -25.92 -0.20 -1.46 16 20 N -0.46 -10.16 11.55 -9.86 -0.11 -10.28 16 21 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 22 H 0.05 1.42 7.19 -51.93 -0.37 1.04 16 23 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 24 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 26 H 0.07 1.36 7.86 -51.93 -0.41 0.95 16 27 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.03 7.32 -51.93 -0.38 0.65 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -32.84 281.72 -6.78 -39.61 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.45 Total: -4.08 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.05 Total: 2.67 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.32 Total: -61.14 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.19 Total: 1.38 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.84 -6.78 -39.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599281357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.456 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds