Wall clock time and date at job start Thu Apr 9 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36934 * 120.00319 * 2 1 4 4 H 1.07995 * 120.00122 * 202.34129 * 3 2 1 5 5 C 1.38811 * 119.99777 * 22.35319 * 3 2 1 6 6 N 1.31621 * 119.99870 * 11.32968 * 5 3 2 7 7 Si 1.86799 * 120.00115 * 191.33425 * 5 3 2 8 8 H 1.48507 * 109.46810 * 59.99813 * 7 5 3 9 9 H 1.48501 * 109.47190 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47202 * 300.00214 * 7 5 3 11 11 C 1.46506 * 119.99715 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.46890 * 269.99903 * 11 2 1 13 13 N 1.29948 * 126.28582 * 89.97509 * 12 11 2 14 14 O 1.21305 * 110.25022 * 180.02562 * 13 12 11 15 15 C 1.33650 * 109.80871 * 0.02562 * 14 13 12 16 16 C 1.50698 * 126.54790 * 179.97438 * 15 14 13 17 17 C 1.53786 * 113.61300 * 300.01999 * 16 15 14 18 18 C 1.53788 * 87.07741 * 89.11727 * 17 16 15 19 19 C 1.53776 * 87.08089 * 25.43526 * 18 17 16 20 20 N 1.31129 * 106.89767 * 0.22658 * 15 14 13 21 21 H 1.08995 * 109.47039 * 274.21398 * 1 2 3 22 22 H 1.08996 * 109.46692 * 34.21163 * 1 2 3 23 23 H 1.08998 * 109.46697 * 154.21053 * 1 2 3 24 24 H 0.96998 * 119.99729 * 179.97438 * 6 5 3 25 25 H 1.08997 * 109.47248 * 150.00057 * 11 2 1 26 26 H 1.08995 * 109.47121 * 29.99665 * 11 2 1 27 27 H 1.08999 * 112.90703 * 168.77131 * 16 15 14 28 28 H 1.09001 * 113.61318 * 334.57572 * 17 16 15 29 29 H 1.08996 * 113.61585 * 203.66992 * 17 16 15 30 30 H 1.09004 * 113.60749 * 139.98215 * 18 17 16 31 31 H 1.08996 * 113.61199 * 270.87818 * 18 17 16 32 32 H 1.09001 * 113.62296 * 89.11175 * 19 18 17 33 33 H 1.09002 * 113.61243 * 219.93302 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1690 1.2209 -0.3555 5 6 1.5340 2.3428 0.4572 6 7 0.3842 2.2689 1.0936 7 14 2.3370 4.0046 0.1692 8 1 2.4920 4.2332 -1.2900 9 1 1.4848 5.0734 0.7495 10 1 3.6723 4.0284 0.8185 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4201 13 7 1.6695 -2.4501 2.1450 14 8 2.1538 -2.6192 3.2442 15 6 3.3232 -1.9776 3.3275 16 6 4.2404 -1.9352 4.5225 17 6 3.5900 -1.3282 5.7770 18 6 3.1171 -2.7500 6.1235 19 6 4.3070 -3.2629 5.2955 20 7 3.5174 -1.3876 2.1727 21 1 -0.3633 0.0755 1.0248 22 1 -0.3632 0.8498 -0.5778 23 1 -0.3632 -0.9253 -0.4471 24 1 -0.0459 3.0774 1.4134 25 1 3.1499 -1.1383 -0.5143 26 1 1.6084 -2.0282 -0.5147 27 1 5.2192 -1.5149 4.2914 28 1 2.7751 -0.6388 5.5562 29 1 4.3089 -0.9216 6.4882 30 1 3.1891 -2.9874 7.1850 31 1 2.1466 -3.0034 5.6969 32 1 5.2220 -3.3852 5.8751 33 1 4.0715 -4.1361 4.6871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599281357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:50 Heat of formation + Delta-G solvation = 90.582381 kcal Electronic energy + Delta-G solvation = -16983.945986 eV Core-core repulsion = 14241.849721 eV Total energy + Delta-G solvation = -2742.096265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -46.46124 -39.77433 -38.01727 -36.38334 -33.80511 -32.69844 -28.96373 -27.97940 -27.43626 -26.58715 -24.90654 -23.75436 -22.46738 -20.30368 -19.09667 -18.76424 -18.10634 -17.04696 -16.95129 -16.08447 -15.59418 -15.50970 -15.27209 -14.56358 -13.80978 -13.66672 -13.47672 -13.28072 -13.13706 -12.96052 -12.68096 -12.53902 -12.30025 -12.14841 -12.02218 -11.93638 -11.65587 -11.47603 -11.32970 -10.76277 -10.71734 -9.06167 -7.93619 -5.45429 0.27140 1.33296 1.43008 1.47117 1.53012 1.96368 2.45633 2.77674 3.16520 3.33033 3.59174 3.61132 3.64670 3.92498 3.92774 4.34891 4.52142 4.68349 4.69760 4.73977 4.84158 4.86232 4.89867 5.02967 5.06379 5.09463 5.18513 5.26973 5.49616 5.51723 5.59766 6.18994 7.00991 7.35432 7.66947 8.11576 9.10147 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.007249 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.820544 B = 3861.646299 C = 4345.929549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.597 5.597 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.051 4.051 6 N -0.940 5.940 7 Si 0.977 3.023 8 H -0.270 1.270 9 H -0.293 1.293 10 H -0.277 1.277 11 C 0.225 3.775 12 C 0.157 3.843 13 N -0.414 5.414 14 O 0.067 5.933 15 C 0.186 3.814 16 C -0.038 4.038 17 C -0.128 4.128 18 C -0.143 4.143 19 C -0.110 4.110 20 N -0.500 5.500 21 H -0.007 1.007 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.250 0.750 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.042 0.958 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.134 0.866 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.358 -10.291 8.952 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.319 5.319 3 C -0.395 4.395 4 H 0.094 0.906 5 C -0.246 4.246 6 N -0.586 5.586 7 Si 0.804 3.196 8 H -0.195 1.195 9 H -0.219 1.219 10 H -0.203 1.203 11 C 0.095 3.905 12 C -0.119 4.119 13 N -0.126 5.126 14 O 0.012 5.988 15 C -0.034 4.034 16 C -0.058 4.058 17 C -0.166 4.166 18 C -0.181 4.181 19 C -0.148 4.148 20 N -0.233 5.233 21 H 0.011 0.989 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.149 0.851 28 H 0.061 0.939 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.678 -10.216 8.370 15.277 hybrid contribution -0.157 1.196 0.029 1.206 sum 7.521 -9.021 8.399 14.439 Atomic orbital electron populations 1.20597 0.81972 0.96719 0.97292 1.44346 1.02430 1.01050 1.84061 1.19557 0.98488 0.85756 1.35712 0.90553 1.25945 0.98292 1.02436 0.97965 1.70270 1.19259 1.27875 1.41199 0.85205 0.77493 0.78601 0.78342 1.19520 1.21874 1.20256 1.19668 0.98398 0.88159 0.84230 1.27944 0.86696 0.93606 1.03685 1.74510 1.22132 1.22511 0.93450 1.85146 1.30382 1.56101 1.27199 1.29047 0.87132 0.90280 0.96957 1.21043 0.95468 1.03129 0.86199 1.23084 1.00765 0.97658 0.95076 1.22971 0.98077 0.94801 1.02221 1.23008 1.00994 0.93581 0.97218 1.71841 1.25788 1.22590 1.03112 0.98866 0.94952 0.94801 0.94120 0.89403 0.89080 0.85083 0.93943 0.85017 0.88001 0.91760 0.84782 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.45 9.01 127.77 1.15 10.60 16 2 N -0.60 -31.76 2.91 -731.31 -2.13 -33.89 16 3 C -0.27 -15.13 9.67 84.03 0.81 -14.31 16 4 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 5 C -0.05 -2.97 5.13 84.86 0.44 -2.53 16 6 N -0.94 -57.74 10.58 21.65 0.23 -57.51 16 7 Si 0.98 46.24 29.57 68.60 2.03 48.27 16 8 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 C 0.23 10.04 6.33 85.63 0.54 10.59 16 12 C 0.16 7.18 7.80 138.46 1.08 8.26 16 13 N -0.41 -18.44 12.16 -60.29 -0.73 -19.17 16 14 O 0.07 2.61 10.25 74.77 0.77 3.38 16 15 C 0.19 6.72 7.35 88.38 0.65 7.37 16 16 C -0.04 -0.91 4.49 -11.01 -0.05 -0.96 16 17 C -0.13 -2.65 7.66 31.12 0.24 -2.41 16 18 C -0.14 -2.54 7.73 31.12 0.24 -2.30 16 19 C -0.11 -1.76 7.63 31.12 0.24 -1.52 16 20 N -0.50 -21.95 11.55 -303.16 -3.50 -25.46 16 21 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 22 H 0.03 1.79 7.19 -2.39 -0.02 1.77 16 23 H 0.03 1.52 7.84 -2.39 -0.02 1.51 16 24 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.09 3.68 8.03 -2.39 -0.02 3.66 16 26 H 0.09 3.56 7.86 -2.39 -0.02 3.54 16 27 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.04 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.44 7.32 -2.39 -0.02 1.43 16 32 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -72.31 281.72 3.10 -69.20 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.10 Total: 2.40 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.34 Total: 12.78 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -6.13 Total: -136.03 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.77 Total: 3.38 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.31 3.10 -69.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599281357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.787 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds