Wall clock time and date at job start Thu Apr 9 2020 12:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99469 * 2 1 4 4 H 1.48496 * 109.46635 * 269.99520 * 3 2 1 5 5 H 1.48498 * 109.47082 * 29.99657 * 3 2 1 6 6 H 1.48496 * 109.46701 * 149.99880 * 3 2 1 7 7 C 1.37865 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00632 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99818 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47220 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47076 * 179.97438 * 12 11 10 14 14 O 1.21270 * 119.99885 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99561 * 180.02562 * 13 12 11 16 16 C 1.48137 * 127.84275 * 359.97438 * 15 13 12 17 17 C 1.54388 * 104.62017 * 140.41615 * 16 15 13 18 18 H 1.09001 * 117.61183 * 244.78626 * 17 16 15 19 19 C 1.52996 * 118.12260 * 87.18794 * 17 16 15 20 20 C 1.52999 * 60.55926 * 268.45790 * 19 17 16 21 21 H 1.08993 * 120.26788 * 248.51925 * 20 19 17 22 22 C 1.48144 * 127.83010 * 179.97438 * 15 13 12 23 23 H 0.97003 * 120.00199 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47038 * 60.00325 * 9 7 2 25 25 H 1.08999 * 109.46949 * 299.99648 * 9 7 2 26 26 H 1.09003 * 109.47411 * 60.00264 * 10 9 7 27 27 H 1.08997 * 109.47248 * 299.99758 * 10 9 7 28 28 H 1.09003 * 109.46789 * 59.99820 * 11 10 9 29 29 H 1.08997 * 109.46785 * 299.99978 * 11 10 9 30 30 H 1.09003 * 109.47186 * 60.00308 * 12 11 10 31 31 H 1.08997 * 109.47424 * 299.99833 * 12 11 10 32 32 H 1.09004 * 110.40594 * 259.20297 * 16 15 13 33 33 H 1.08999 * 110.40558 * 21.51243 * 16 15 13 34 34 H 1.09002 * 117.44131 * 160.81152 * 19 17 16 35 35 H 1.08999 * 117.44558 * 16.11365 * 19 17 16 36 36 H 1.09000 * 110.40667 * 100.80022 * 22 15 13 37 37 H 1.08996 * 110.51034 * 338.42040 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0022 12 6 6.0617 -4.0787 0.0028 13 6 7.5687 -4.0787 0.0033 14 8 8.1750 -3.0284 0.0029 15 7 8.2426 -5.2459 0.0033 16 6 7.6839 -6.6179 0.0033 17 6 8.6032 -7.4130 -0.9486 18 1 8.1640 -7.8018 -1.8674 19 6 9.8640 -8.0539 -0.3652 20 6 9.9393 -6.6415 -0.9487 21 1 10.4955 -6.4556 -1.8674 22 6 9.7102 -5.4478 0.0033 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6587 -3.1500 -0.8893 27 1 3.6580 -3.1504 0.8907 28 1 5.9142 -2.1228 0.8927 29 1 5.9156 -2.1222 -0.8873 30 1 5.6991 -4.5927 -0.8875 31 1 5.6977 -4.5925 0.8924 32 1 7.7178 -7.0421 1.0069 33 1 6.6603 -6.6114 -0.3713 34 1 10.3285 -8.8584 -0.9355 35 1 9.9215 -8.1535 0.7187 36 1 10.0607 -5.6892 1.0068 37 1 10.2179 -4.5594 -0.3721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600218545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:55 Heat of formation + Delta-G solvation = -19.881758 kcal Electronic energy + Delta-G solvation = -16222.929656 eV Core-core repulsion = 13579.583650 eV Total energy + Delta-G solvation = -2643.346006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57140 -38.52749 -35.01991 -33.80626 -32.54334 -30.29292 -28.79481 -26.91679 -25.17678 -22.21493 -21.58052 -20.50388 -20.00885 -19.21180 -17.27492 -16.57062 -16.09068 -15.72794 -15.43553 -14.88282 -14.15780 -13.78183 -13.64502 -12.99269 -12.73038 -12.48997 -12.27605 -12.15523 -12.02721 -11.83408 -11.71155 -11.09977 -10.72723 -10.61979 -10.52125 -10.49879 -9.91550 -9.77849 -9.62983 -9.39532 -9.10254 -8.93372 -8.47919 -5.99167 -3.96607 2.63344 2.79052 3.09250 3.36725 3.43590 3.49994 4.10959 4.20997 4.40988 4.51579 4.63403 4.76894 4.81581 5.09683 5.22308 5.25554 5.29961 5.31091 5.35916 5.48618 5.53668 5.67439 5.72766 5.77012 5.96815 6.04708 6.18479 6.43322 6.69997 6.83537 7.00944 7.39166 7.41139 7.52824 7.86289 8.14790 8.59841 9.05791 9.64322 11.14367 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.059595 B = 0.003781 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.727302 B = 7404.393568 C = 7765.585162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.133 4.133 13 C 0.535 3.465 14 O -0.536 6.536 15 N -0.631 5.631 16 C 0.126 3.874 17 C -0.179 4.179 18 H 0.122 0.878 19 C -0.136 4.136 20 C -0.178 4.178 21 H 0.120 0.880 22 C 0.129 3.871 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.011 0.989 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.765 -17.458 -0.622 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.173 4.173 13 C 0.325 3.675 14 O -0.412 6.412 15 N -0.367 5.367 16 C 0.004 3.996 17 C -0.198 4.198 18 H 0.140 0.860 19 C -0.174 4.174 20 C -0.198 4.198 21 H 0.138 0.862 22 C 0.007 3.993 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.846 -16.610 -0.610 25.887 hybrid contribution 0.345 0.749 -0.153 0.839 sum 20.192 -15.861 -0.763 25.688 Atomic orbital electron populations 1.69923 1.06308 1.26818 1.51546 1.25040 0.94733 0.99225 0.94616 0.86772 0.80442 0.83542 0.78543 1.20315 1.21457 1.18885 1.21187 0.89673 0.94388 1.50455 0.91104 1.19578 0.96896 0.92489 0.96333 1.21475 0.91618 0.99944 1.00934 1.21503 0.97258 0.92776 1.02936 1.21762 0.89737 1.01713 1.04103 1.20790 0.90569 0.81417 0.74715 1.90704 1.70606 1.30381 1.49474 1.49426 1.06884 1.05773 1.74604 1.21850 0.97752 0.81128 0.98914 1.23687 0.89834 1.03900 1.02412 0.85985 1.23043 0.98610 0.94477 1.01230 1.23692 1.01964 0.91683 1.02418 0.86185 1.21708 0.81905 0.97284 0.98444 0.92824 0.96594 0.97049 0.92859 0.92823 0.91757 0.91777 0.89032 0.89010 0.90677 0.89270 0.87750 0.88525 0.91069 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.13 -1.80 4.68 -27.88 -0.13 -1.93 16 13 C 0.53 7.84 7.91 -10.98 -0.09 7.76 16 14 O -0.54 -10.03 16.25 5.57 0.09 -9.94 16 15 N -0.63 -7.15 3.32 -169.31 -0.56 -7.71 16 16 C 0.13 1.00 6.72 -2.41 -0.02 0.99 16 17 C -0.18 -1.21 7.13 -89.22 -0.64 -1.84 16 18 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.14 -0.74 10.07 -26.73 -0.27 -1.00 16 20 C -0.18 -1.30 7.13 -89.21 -0.64 -1.94 16 21 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.13 1.25 6.85 -2.41 -0.02 1.23 16 23 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.64 7.30 -51.93 -0.38 0.26 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -34.26 304.75 -8.57 -42.82 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -6.20 Total: -4.68 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.59 Total: -15.15 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.21 Total: -35.55 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.26 -8.57 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600218545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.943 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds