Wall clock time and date at job start Thu Apr 9 2020 12:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99469 * 2 1 4 4 H 1.48496 * 109.46635 * 269.99520 * 3 2 1 5 5 H 1.48498 * 109.47082 * 29.99657 * 3 2 1 6 6 H 1.48496 * 109.46701 * 149.99880 * 3 2 1 7 7 C 1.37865 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00632 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99818 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47220 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47076 * 179.97438 * 12 11 10 14 14 O 1.21270 * 119.99885 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99561 * 180.02562 * 13 12 11 16 16 C 1.48137 * 127.84275 * 359.97438 * 15 13 12 17 17 C 1.54388 * 104.62017 * 140.41615 * 16 15 13 18 18 H 1.09001 * 117.61183 * 244.78626 * 17 16 15 19 19 C 1.52996 * 118.12260 * 87.18794 * 17 16 15 20 20 C 1.52999 * 60.55926 * 268.45790 * 19 17 16 21 21 H 1.08993 * 120.26788 * 248.51925 * 20 19 17 22 22 C 1.48144 * 127.83010 * 179.97438 * 15 13 12 23 23 H 0.97003 * 120.00199 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47038 * 60.00325 * 9 7 2 25 25 H 1.08999 * 109.46949 * 299.99648 * 9 7 2 26 26 H 1.09003 * 109.47411 * 60.00264 * 10 9 7 27 27 H 1.08997 * 109.47248 * 299.99758 * 10 9 7 28 28 H 1.09003 * 109.46789 * 59.99820 * 11 10 9 29 29 H 1.08997 * 109.46785 * 299.99978 * 11 10 9 30 30 H 1.09003 * 109.47186 * 60.00308 * 12 11 10 31 31 H 1.08997 * 109.47424 * 299.99833 * 12 11 10 32 32 H 1.09004 * 110.40594 * 259.20297 * 16 15 13 33 33 H 1.08999 * 110.40558 * 21.51243 * 16 15 13 34 34 H 1.09002 * 117.44131 * 160.81152 * 19 17 16 35 35 H 1.08999 * 117.44558 * 16.11365 * 19 17 16 36 36 H 1.09000 * 110.40667 * 100.80022 * 22 15 13 37 37 H 1.08996 * 110.51034 * 338.42040 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0022 12 6 6.0617 -4.0787 0.0028 13 6 7.5687 -4.0787 0.0033 14 8 8.1750 -3.0284 0.0029 15 7 8.2426 -5.2459 0.0033 16 6 7.6839 -6.6179 0.0033 17 6 8.6032 -7.4130 -0.9486 18 1 8.1640 -7.8018 -1.8674 19 6 9.8640 -8.0539 -0.3652 20 6 9.9393 -6.6415 -0.9487 21 1 10.4955 -6.4556 -1.8674 22 6 9.7102 -5.4478 0.0033 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6587 -3.1500 -0.8893 27 1 3.6580 -3.1504 0.8907 28 1 5.9142 -2.1228 0.8927 29 1 5.9156 -2.1222 -0.8873 30 1 5.6991 -4.5927 -0.8875 31 1 5.6977 -4.5925 0.8924 32 1 7.7178 -7.0421 1.0069 33 1 6.6603 -6.6114 -0.3713 34 1 10.3285 -8.8584 -0.9355 35 1 9.9215 -8.1535 0.7187 36 1 10.0607 -5.6892 1.0068 37 1 10.2179 -4.5594 -0.3721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600218545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:54 Heat of formation + Delta-G solvation = -41.102003 kcal Electronic energy + Delta-G solvation = -16223.849835 eV Core-core repulsion = 13579.583650 eV Total energy + Delta-G solvation = -2644.266185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38748 -39.48121 -36.68456 -34.72324 -34.50873 -31.94524 -29.59008 -28.16853 -26.49842 -23.66605 -22.32163 -21.75216 -21.12055 -20.17774 -18.86853 -18.14066 -17.11947 -16.59402 -16.41000 -16.20039 -15.97715 -14.91163 -14.83383 -14.46754 -13.92083 -13.74235 -13.60843 -13.48821 -13.23931 -12.86701 -12.55575 -12.49158 -12.33759 -12.10910 -11.76435 -11.54564 -11.37377 -11.28654 -11.17600 -11.09258 -10.76551 -10.64301 -9.82389 -8.30214 -6.33316 1.34431 1.35871 1.48894 1.55609 1.90486 2.35563 2.58201 3.05213 3.50617 3.58010 3.76453 3.93894 3.99286 4.10951 4.12295 4.26879 4.47527 4.53661 4.60806 4.69401 4.71350 4.77813 4.82556 4.88313 5.03804 5.11239 5.11965 5.15814 5.21951 5.25364 5.29748 5.58204 5.64177 5.67740 6.28953 6.47082 6.74564 7.08970 7.31652 8.86425 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.059595 B = 0.003781 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.727302 B = 7404.393568 C = 7765.585162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.017 4.017 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.124 4.124 13 C 0.529 3.471 14 O -0.589 6.589 15 N -0.630 5.630 16 C 0.118 3.882 17 C -0.180 4.180 18 H 0.132 0.868 19 C -0.115 4.115 20 C -0.190 4.190 21 H 0.122 0.878 22 C 0.122 3.878 23 H 0.266 0.734 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.287 -18.958 -0.631 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.054 4.054 10 C -0.130 4.130 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.320 3.680 14 O -0.470 6.470 15 N -0.363 5.363 16 C -0.003 4.003 17 C -0.199 4.199 18 H 0.150 0.850 19 C -0.152 4.152 20 C -0.209 4.209 21 H 0.140 0.860 22 C 0.000 4.000 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.383 -18.179 -0.621 28.073 hybrid contribution -0.153 1.098 -0.144 1.118 sum 21.229 -17.081 -0.766 27.259 Atomic orbital electron populations 1.70059 1.08108 1.28105 1.52894 1.25982 0.95612 1.03370 0.94269 0.85699 0.79376 0.78655 0.79191 1.19212 1.20654 1.17675 1.21540 0.92062 0.93266 1.49979 0.94382 1.19575 0.93947 0.95820 0.96096 1.21332 0.93419 0.96835 1.01436 1.21294 0.95037 0.95464 1.01761 1.21651 0.89168 0.99272 1.06281 1.20905 0.90975 0.81640 0.74438 1.90678 1.71541 1.32418 1.52344 1.49499 1.07885 1.06282 1.72674 1.22144 0.98520 0.79269 1.00367 1.23769 0.89503 1.03864 1.02732 0.85013 1.23156 0.96845 0.93249 1.01933 1.23626 1.03044 0.91823 1.02386 0.85975 1.21835 0.80865 0.97596 0.99706 0.92482 0.96790 0.96930 0.92354 0.92330 0.93007 0.93024 0.86828 0.86718 0.89055 0.88203 0.85909 0.87737 0.89934 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.92 13.96 21.44 0.30 -60.62 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 46.39 27.47 68.60 1.88 48.27 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 7 C -0.53 -31.54 9.66 25.60 0.25 -31.30 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.63 5.15 30.60 0.16 -3.47 16 11 C -0.10 -3.30 4.50 30.59 0.14 -3.17 16 12 C -0.12 -3.12 4.68 29.85 0.14 -2.98 16 13 C 0.53 15.09 7.91 87.66 0.69 15.78 16 14 O -0.59 -22.38 16.25 -3.00 -0.05 -22.42 16 15 N -0.63 -13.31 3.32 -807.97 -2.68 -15.99 16 16 C 0.12 1.53 6.72 86.54 0.58 2.11 16 17 C -0.18 -1.87 7.13 -9.89 -0.07 -1.94 16 18 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 19 C -0.11 -0.84 10.07 30.59 0.31 -0.53 16 20 C -0.19 -2.37 7.13 -9.88 -0.07 -2.44 16 21 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 22 C 0.12 2.24 6.85 86.54 0.59 2.83 16 23 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 25 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 29 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 30 H 0.11 2.36 7.95 -2.39 -0.02 2.34 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.10 1.09 7.30 -2.39 -0.02 1.07 16 34 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.46 7.88 -2.39 -0.02 1.44 16 Total: -1.00 -75.29 304.75 3.72 -71.57 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 0.97 Total: 4.28 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 3.30 Total: -25.09 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.38 Total: -76.60 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.27 kcal Total: -75.29 3.72 -71.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600218545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.467 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds