Wall clock time and date at job start Thu Apr 9 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34305 * 125.78618 * 2 1 4 4 C 1.34305 * 109.47225 * 179.79256 * 3 2 1 5 5 C 1.34512 * 108.42433 * 0.37505 * 4 3 2 6 6 C 1.34515 * 125.79099 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.57820 * 359.94838 * 6 2 1 8 8 N 1.46894 * 109.47231 * 80.01382 * 7 6 2 9 9 C 1.46906 * 111.00046 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.46956 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47198 * 304.99218 * 10 9 8 12 12 C 1.52996 * 109.47445 * 64.99986 * 10 9 8 13 13 C 1.53005 * 109.46929 * 184.99966 * 10 9 8 14 14 C 1.50701 * 109.47144 * 174.99876 * 13 10 9 15 15 H 1.07997 * 119.99898 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99757 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00346 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99816 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47145 * 60.00315 * 18 16 14 20 20 H 1.48500 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47104 * 300.00087 * 18 16 14 22 22 H 1.09001 * 109.46921 * 269.97658 * 1 2 3 23 23 H 1.08999 * 109.46975 * 29.97601 * 1 2 3 24 24 H 1.08996 * 109.46842 * 149.98045 * 1 2 3 25 25 H 1.07998 * 125.79083 * 180.23421 * 4 3 2 26 26 H 1.08002 * 126.58498 * 179.90305 * 5 4 3 27 27 H 1.08993 * 109.46815 * 200.01316 * 7 6 2 28 28 H 1.09007 * 109.47004 * 320.01343 * 7 6 2 29 29 H 1.00908 * 111.00324 * 303.95364 * 8 7 6 30 30 H 1.08996 * 109.46719 * 299.99707 * 9 8 7 31 31 H 1.08997 * 109.46698 * 59.99757 * 9 8 7 32 32 H 1.09002 * 109.47257 * 59.99902 * 12 10 9 33 33 H 1.09001 * 109.47388 * 180.02562 * 12 10 9 34 34 H 1.08996 * 109.46889 * 299.99637 * 12 10 9 35 35 H 1.08998 * 109.46745 * 294.99968 * 13 10 9 36 36 H 1.09002 * 109.47255 * 54.99498 * 13 10 9 37 37 H 0.97001 * 119.99915 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0895 0.0000 4 6 3.5814 0.7122 0.0046 5 6 3.6309 -0.6320 -0.0008 6 6 2.2937 -1.0911 -0.0005 7 6 1.8373 -2.5273 0.0000 8 7 1.4591 -2.9214 -1.3637 9 6 1.0072 -4.3187 -1.4017 10 6 0.6235 -4.6917 -2.8350 11 1 -0.1177 -3.9850 -3.2084 12 6 1.8672 -4.6442 -3.7248 13 6 0.0362 -6.1044 -2.8545 14 6 -0.4543 -6.4255 -4.2428 15 1 -0.3566 -5.6951 -5.0324 16 6 -1.0269 -7.6519 -4.5052 17 7 -1.1456 -8.5415 -3.5438 18 14 -1.6356 -8.0496 -6.2259 19 1 -0.5024 -7.9708 -7.1823 20 1 -2.2055 -9.4208 -6.2448 21 1 -2.6834 -7.0731 -6.6183 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 4.4336 1.3756 0.0093 26 1 4.5213 -1.2433 -0.0005 27 1 2.6477 -3.1660 0.3511 28 1 0.9773 -2.6351 0.6610 29 1 0.7538 -2.3033 -1.7363 30 1 1.8116 -4.9700 -1.0601 31 1 0.1414 -4.4383 -0.7505 32 1 2.6083 -5.3509 -3.3515 33 1 1.5937 -4.9095 -4.7461 34 1 2.2855 -3.6378 -3.7110 35 1 0.8048 -6.8214 -2.5658 36 1 -0.7960 -6.1617 -2.1528 37 1 -1.5488 -9.4042 -3.7283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602518194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:03 Heat of formation + Delta-G solvation = -9.362096 kcal Electronic energy + Delta-G solvation = -16360.133260 eV Core-core repulsion = 13717.243421 eV Total energy + Delta-G solvation = -2642.889840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61261 -37.05191 -34.73961 -32.80310 -31.94806 -31.46835 -27.64665 -26.67642 -25.59957 -23.99653 -22.13314 -21.50582 -19.80053 -18.95402 -17.02884 -16.32362 -16.18127 -15.31380 -14.68216 -14.59609 -14.10453 -13.86715 -13.50748 -13.11392 -12.84839 -12.76780 -12.43445 -12.27921 -11.90011 -11.45589 -11.45169 -11.26863 -10.82487 -10.73622 -10.27067 -10.22862 -9.77709 -9.67309 -9.12070 -8.94705 -8.41646 -8.30681 -8.04761 -5.95701 -3.96815 1.67782 2.54669 2.96253 3.35895 3.40111 3.42805 4.47924 4.62544 4.66071 4.86484 4.95024 5.14906 5.30945 5.39999 5.44675 5.54120 5.66974 5.76313 5.80073 5.89422 6.03618 6.18227 6.19884 6.44184 6.50106 6.58000 6.72332 7.04046 7.10124 7.21754 7.22522 7.39118 7.66719 7.72122 7.87779 8.04607 8.48770 9.09392 9.66447 11.15823 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049082 B = 0.003967 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.341284 B = 7057.395793 C = 7108.095967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 O -0.179 6.179 4 C -0.053 4.053 5 C -0.192 4.192 6 C -0.167 4.167 7 C 0.126 3.874 8 N -0.682 5.682 9 C 0.063 3.937 10 C -0.082 4.082 11 H 0.053 0.947 12 C -0.123 4.123 13 C 0.027 3.973 14 C -0.513 4.513 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.200 0.800 26 H 0.147 0.853 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.335 0.665 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 16.623 8.509 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 O -0.076 6.076 4 C -0.120 4.120 5 C -0.211 4.211 6 C -0.168 4.168 7 C -0.003 4.003 8 N -0.313 5.313 9 C -0.066 4.066 10 C -0.101 4.101 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.010 4.010 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.217 0.783 26 H 0.165 0.835 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.153 0.847 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.787 16.560 8.363 19.754 hybrid contribution -0.944 -0.442 -0.502 1.157 sum 5.843 16.118 7.861 18.860 Atomic orbital electron populations 1.20302 0.85317 1.04079 1.03357 1.22256 0.93848 0.83965 1.06398 1.83985 1.16879 1.34851 1.71859 1.23894 0.84222 0.96012 1.07920 1.21708 0.97803 0.94566 1.07044 1.20174 0.92975 0.95640 1.08052 1.20222 0.99341 0.90095 0.90594 1.60583 1.46700 1.04381 1.19639 1.22185 0.97986 0.87644 0.98755 1.21198 0.97006 1.00116 0.91786 0.92887 1.21584 0.96986 0.99516 0.99913 1.19121 0.95480 0.89461 0.96950 1.21207 1.38651 0.99694 0.95582 0.92622 1.25017 0.96178 0.96504 0.96823 1.69959 1.45062 1.06689 1.32028 0.86690 0.79134 0.77301 0.85065 1.20260 1.21380 1.20324 0.90237 0.90464 0.89537 0.78328 0.83536 0.90353 0.94790 0.84699 0.91464 0.95726 0.94173 0.92813 0.93942 0.96546 0.96929 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.20 36.01 0.37 -0.31 16 2 C -0.01 -0.17 7.32 -35.62 -0.26 -0.43 16 3 O -0.18 -2.17 10.65 5.70 0.06 -2.11 16 4 C -0.05 -0.55 12.09 29.42 0.36 -0.20 16 5 C -0.19 -2.25 10.87 -39.70 -0.43 -2.68 16 6 C -0.17 -2.13 5.68 -104.74 -0.59 -2.73 16 7 C 0.13 1.67 5.70 -4.98 -0.03 1.64 16 8 N -0.68 -10.28 5.94 -115.06 -0.68 -10.97 16 9 C 0.06 1.09 5.07 -3.82 -0.02 1.07 16 10 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16 11 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 12 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 14 C -0.51 -14.48 8.41 -34.44 -0.29 -14.76 16 15 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.79 7.03 -51.93 -0.37 0.43 16 25 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 26 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.34 4.84 7.88 -39.29 -0.31 4.53 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 34 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -31.17 309.86 -7.27 -38.44 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.02 Total: -0.08 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.02 Total: -20.35 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.05 Total: -37.36 kcal Atomic # 8 Polarization: -2.17 SS G_CDS: 0.06 Total: -2.11 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.17 -7.27 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602518194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.079 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds