Wall clock time and date at job start Thu Apr 9 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.54993 * 179.91634 * 9 7 2 11 11 N 1.46904 * 109.46977 * 325.57893 * 10 9 7 12 12 C 1.46892 * 111.00245 * 293.95683 * 11 10 9 13 13 C 1.52999 * 117.50159 * 243.61973 * 12 11 10 14 14 C 1.52995 * 60.00182 * 252.50993 * 13 12 11 15 15 C 1.46898 * 110.99926 * 170.00180 * 11 10 9 16 16 C 1.54036 * 113.81778 * 37.46205 * 15 11 10 17 17 O 1.44447 * 85.42469 * 223.23663 * 16 15 11 18 18 C 1.44173 * 93.38092 * 24.09138 * 17 16 15 19 19 C 1.53003 * 117.50023 * 34.20639 * 9 7 2 20 20 C 1.52999 * 117.50063 * 325.58420 * 9 7 2 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47557 * 85.58369 * 10 9 7 23 23 H 1.09004 * 109.47358 * 205.58248 * 10 9 7 24 24 H 1.09001 * 115.55352 * 29.32844 * 12 11 10 25 25 H 1.09004 * 117.49700 * 0.02562 * 13 12 11 26 26 H 1.09001 * 117.50255 * 145.01979 * 13 12 11 27 27 H 1.08998 * 117.49805 * 252.50869 * 14 13 12 28 28 H 1.09006 * 117.49895 * 107.48595 * 14 13 12 29 29 H 1.08997 * 112.99854 * 169.29314 * 15 11 10 30 30 H 1.08997 * 113.86418 * 337.34351 * 16 15 11 31 31 H 1.08999 * 113.86337 * 109.04760 * 16 15 11 32 32 H 1.09002 * 113.86527 * 221.76848 * 18 17 16 33 33 H 1.08997 * 113.87059 * 90.06305 * 18 17 16 34 34 H 1.08994 * 117.49976 * 359.97438 * 19 9 7 35 35 H 1.09000 * 117.49896 * 145.02352 * 19 9 7 36 36 H 1.09003 * 117.50192 * 214.98138 * 20 9 7 37 37 H 1.08998 * 117.50026 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0032 11 7 3.3343 -3.5176 -0.7879 12 6 3.0140 -3.3105 -2.2064 13 6 3.5561 -4.3309 -3.2094 14 6 4.1630 -2.9280 -3.1416 15 6 4.2965 -4.6148 -0.6202 16 6 3.6430 -6.0066 -0.5282 17 8 4.5763 -6.2462 0.5479 18 6 4.7316 -4.8429 0.8398 19 6 -0.0745 -2.5496 -0.7630 20 6 -0.0715 -2.5513 0.7670 21 1 -0.4850 0.8401 0.0004 22 1 2.3890 -4.0167 1.0207 23 1 1.5569 -4.5844 -0.4468 24 1 2.0348 -2.8767 -2.4088 25 1 4.1501 -5.1561 -2.8165 26 1 2.9334 -4.5687 -4.0718 27 1 3.9395 -2.2430 -3.9594 28 1 5.1566 -2.8301 -2.7042 29 1 5.1272 -4.5641 -1.3241 30 1 2.6005 -5.9842 -0.2111 31 1 3.8101 -6.6311 -1.4059 32 1 5.7602 -4.5463 1.0449 33 1 4.0222 -4.4643 1.5757 34 1 -0.4018 -1.6387 -1.2642 35 1 -0.3302 -3.4817 -1.2668 36 1 -0.3252 -3.4846 1.2698 37 1 -0.3963 -1.6419 1.2723 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602832491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:27 Heat of formation + Delta-G solvation = 54.676938 kcal Electronic energy + Delta-G solvation = -17938.569891 eV Core-core repulsion = 15298.456992 eV Total energy + Delta-G solvation = -2640.112899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86898 -39.06619 -37.83978 -34.35807 -33.27456 -29.47138 -27.62106 -27.46536 -26.38501 -23.09460 -22.86039 -22.19047 -21.35736 -19.76545 -18.16129 -17.60308 -17.28985 -16.94359 -16.69359 -16.13199 -15.37950 -15.01449 -14.74729 -14.07885 -13.82147 -13.60635 -13.14614 -12.92586 -12.88012 -12.51008 -12.35468 -12.23814 -12.15190 -11.91648 -11.86998 -11.44076 -11.28865 -11.10672 -10.73088 -10.52086 -10.21530 -9.93647 -8.78548 -7.90126 -5.96523 1.44281 1.47296 1.56451 2.50580 2.66290 2.89521 3.08860 3.15862 3.57320 3.90832 3.95115 4.06025 4.14268 4.24361 4.28828 4.35883 4.56573 4.58020 4.64775 4.78376 4.81335 4.84837 4.93427 5.03454 5.06027 5.12611 5.17626 5.24295 5.32247 5.39562 5.44392 5.72480 6.03696 6.24520 6.30518 6.36287 6.66525 7.08438 7.59886 9.04290 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.008755 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.344795 B = 3197.389049 C = 3405.064162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.293 1.293 7 C -0.452 4.452 8 H 0.069 0.931 9 C 0.019 3.981 10 C 0.110 3.890 11 N -0.488 5.488 12 C 0.027 3.973 13 C -0.206 4.206 14 C -0.173 4.173 15 C 0.022 3.978 16 C -0.001 4.001 17 O -0.400 6.400 18 C 0.037 3.963 19 C -0.188 4.188 20 C -0.194 4.194 21 H 0.251 0.749 22 H 0.067 0.933 23 H 0.030 0.970 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -8.960 -3.918 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.220 1.220 7 C -0.489 4.489 8 H 0.087 0.913 9 C 0.019 3.981 10 C -0.016 4.016 11 N -0.209 5.209 12 C -0.082 4.082 13 C -0.245 4.245 14 C -0.211 4.211 15 C -0.087 4.087 16 C -0.079 4.079 17 O -0.318 6.318 18 C -0.040 4.040 19 C -0.226 4.226 20 C -0.233 4.233 21 H 0.061 0.939 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.116 0.884 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.757 -8.619 -3.602 12.142 hybrid contribution -0.613 0.704 -0.243 0.965 sum 7.144 -7.914 -3.845 11.334 Atomic orbital electron populations 1.70181 1.06741 1.25800 1.52191 1.25689 0.95568 1.01895 0.96097 0.85697 0.78822 0.80250 0.77623 1.20976 1.19382 1.21974 1.20854 0.93270 0.88959 1.45858 0.91319 1.19119 0.85535 0.93746 0.99730 1.21546 0.89153 0.94506 0.96444 1.61479 1.12418 1.39855 1.07126 1.22379 0.98205 1.03006 0.84609 1.23688 1.04878 0.93249 1.02650 1.23025 0.98247 0.97984 1.01803 1.25180 0.96922 0.88125 0.98517 1.24946 0.94634 0.97322 0.91008 1.89643 1.62543 1.25667 1.53978 1.24282 1.03208 0.80082 0.96404 1.22723 1.06812 0.98977 0.94117 1.22707 1.06761 0.99322 0.94498 0.93926 0.91519 0.95233 0.88363 0.87492 0.88219 0.88630 0.88612 0.85818 0.90169 0.87591 0.87292 0.90279 0.90291 0.92403 0.92082 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.92 8.59 21.45 0.18 -50.73 16 2 C 0.00 0.25 5.28 84.66 0.45 0.70 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.45 -23.58 8.39 25.60 0.21 -23.36 16 8 H 0.07 3.61 7.22 -2.91 -0.02 3.59 16 9 C 0.02 0.91 1.57 -52.93 -0.08 0.83 16 10 C 0.11 4.20 3.83 86.30 0.33 4.53 16 11 N -0.49 -16.78 3.76 -881.81 -3.32 -20.10 16 12 C 0.03 0.91 5.50 44.92 0.25 1.15 16 13 C -0.21 -5.13 9.37 30.59 0.29 -4.85 16 14 C -0.17 -4.85 9.97 30.59 0.30 -4.55 16 15 C 0.02 0.60 3.00 45.62 0.14 0.74 16 16 C 0.00 -0.02 7.82 72.30 0.57 0.54 16 17 O -0.40 -11.64 12.46 -148.98 -1.86 -13.50 16 18 C 0.04 1.02 8.68 72.30 0.63 1.64 16 19 C -0.19 -9.06 8.69 30.60 0.27 -8.80 16 20 C -0.19 -9.47 9.38 30.59 0.29 -9.18 16 21 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 22 H 0.07 2.49 6.00 -2.39 -0.01 2.47 16 23 H 0.03 1.06 6.37 -2.39 -0.02 1.05 16 24 H 0.10 3.94 6.76 -2.39 -0.02 3.92 16 25 H 0.11 2.34 4.98 -2.38 -0.01 2.33 16 26 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.10 2.57 7.72 -2.38 -0.02 2.56 16 29 H 0.12 3.05 6.21 -2.39 -0.01 3.03 16 30 H 0.08 2.21 5.71 -2.39 -0.01 2.19 16 31 H 0.11 2.26 7.43 -2.39 -0.02 2.25 16 32 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.08 2.34 6.25 -2.39 -0.01 2.33 16 34 H 0.08 4.32 6.27 -2.39 -0.01 4.30 16 35 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 36 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.08 4.42 6.29 -2.39 -0.02 4.41 16 Total: -1.00 -57.58 283.28 1.73 -55.85 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 1.07 Total: 23.41 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 3.63 Total: -40.60 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -3.13 Total: -70.83 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.86 Total: -13.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -57.58 1.73 -55.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.527 kcal (2) G-P(sol) polarization free energy of solvation -57.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds