Wall clock time and date at job start Thu Apr 9 2020 12:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48499 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46899 * 299.99167 * 3 2 1 6 6 H 1.48498 * 109.47521 * 59.99600 * 3 2 1 7 7 C 1.37873 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99994 * 189.61507 * 7 2 1 9 9 C 1.50703 * 120.00103 * 9.34499 * 7 2 1 10 10 C 1.52996 * 115.54858 * 40.50532 * 9 7 2 11 11 N 1.46905 * 109.46870 * 64.40901 * 10 9 7 12 12 C 1.48505 * 110.99836 * 278.83459 * 11 10 9 13 13 C 1.54265 * 104.74231 * 200.67408 * 12 11 10 14 14 H 1.09001 * 113.16725 * 260.64015 * 13 12 11 15 15 C 1.54393 * 108.77856 * 134.58587 * 13 12 11 16 16 O 1.44378 * 104.91834 * 224.67639 * 15 13 12 17 17 C 1.45570 * 105.66552 * 40.46150 * 16 15 13 18 18 C 1.54397 * 104.33881 * 319.91485 * 17 16 15 19 19 H 1.08998 * 112.68170 * 260.58292 * 18 17 16 20 20 C 1.48509 * 110.99749 * 163.44139 * 11 10 9 21 21 C 1.53003 * 117.49763 * 254.79701 * 9 7 2 22 22 C 1.53001 * 60.00130 * 252.51254 * 21 9 7 23 23 H 0.96995 * 120.00308 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46815 * 184.40397 * 10 9 7 25 25 H 1.08996 * 109.47168 * 304.40518 * 10 9 7 26 26 H 1.09007 * 110.38133 * 319.48258 * 12 11 10 27 27 H 1.08997 * 110.38369 * 81.85064 * 12 11 10 28 28 H 1.09003 * 110.35057 * 343.53808 * 15 13 12 29 29 H 1.08999 * 110.34628 * 105.70957 * 15 13 12 30 30 H 1.09000 * 110.97259 * 201.08176 * 17 16 15 31 31 H 1.09000 * 110.28866 * 78.41293 * 17 16 15 32 32 H 1.08997 * 110.38701 * 278.14226 * 20 11 10 33 33 H 1.09000 * 110.38584 * 40.40360 * 20 11 10 34 34 H 1.09000 * 117.49691 * 0.02562 * 21 9 7 35 35 H 1.08995 * 117.49755 * 145.01597 * 21 9 7 36 36 H 1.08998 * 117.49628 * 252.51131 * 22 21 9 37 37 H 1.08999 * 117.51330 * 107.48390 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1568 9 6 1.2660 -2.4906 -0.2108 10 6 0.1658 -2.4577 -1.2735 11 7 0.7646 -2.2021 -2.5904 12 6 1.0271 -0.7533 -2.7836 13 6 1.1305 -0.5734 -4.3122 14 1 2.1591 -0.5341 -4.6707 15 6 0.3088 0.6673 -4.7234 16 8 -0.4321 0.2522 -5.8910 17 6 -0.8761 -1.1058 -5.6124 18 6 0.3291 -1.7652 -4.9079 19 1 0.9249 -2.3807 -5.5819 20 6 -0.1810 -2.5498 -3.6815 21 6 1.0419 -3.3832 1.0114 22 6 2.0601 -3.7892 -0.0559 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3522 -3.4166 -1.2899 25 1 -0.5440 -1.6651 -1.0371 26 1 0.2019 -0.1618 -2.3867 27 1 1.9637 -0.4698 -2.3036 28 1 -0.3738 0.9523 -3.9228 29 1 0.9721 1.4969 -4.9684 30 1 -1.1122 -1.6360 -6.5351 31 1 -1.7415 -1.0921 -4.9499 32 1 -0.1555 -3.6214 -3.8789 33 1 -1.1921 -2.2362 -3.4218 34 1 1.4282 -3.0325 1.9684 35 1 0.1103 -3.9471 1.0587 36 1 1.7985 -4.6203 -0.7108 37 1 3.1167 -3.7058 0.1986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603039642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:34 Heat of formation + Delta-G solvation = -4.511514 kcal Electronic energy + Delta-G solvation = -18102.526426 eV Core-core repulsion = 15459.846923 eV Total energy + Delta-G solvation = -2642.679503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.86479 -37.14559 -35.33645 -32.29972 -30.91019 -30.18851 -26.02424 -25.44259 -25.15804 -22.30999 -21.11268 -20.53176 -19.40434 -18.79652 -16.51932 -16.15383 -15.17637 -15.05837 -14.76652 -14.29777 -13.90650 -13.50180 -13.12948 -12.68047 -12.51597 -11.89099 -11.78001 -11.45942 -11.14062 -10.90479 -10.71793 -10.55439 -10.46024 -10.39115 -10.23530 -10.10453 -9.94182 -9.57984 -9.27070 -8.97125 -8.62369 -8.10332 -7.33998 -6.05263 -4.07667 3.19702 3.30696 3.34895 4.17551 4.32115 4.74196 4.78951 5.04277 5.09805 5.37689 5.41500 5.50808 5.67152 5.68868 5.76332 5.95097 5.99560 6.09660 6.16082 6.26655 6.27022 6.40639 6.49608 6.65695 6.80108 6.81671 6.88600 6.97438 7.00812 7.14857 7.22829 7.40920 7.46859 7.82475 8.03828 8.18695 8.46389 8.87180 9.47851 10.92924 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.011089 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.745537 B = 2524.350948 C = 3419.397488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.471 4.471 8 H 0.059 0.941 9 C 0.064 3.936 10 C 0.074 3.926 11 N -0.494 5.494 12 C 0.053 3.947 13 C -0.130 4.130 14 H 0.090 0.910 15 C 0.049 3.951 16 O -0.387 6.387 17 C 0.050 3.950 18 C -0.120 4.120 19 H 0.091 0.909 20 C 0.035 3.965 21 C -0.204 4.204 22 C -0.200 4.200 23 H 0.259 0.741 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -1.533 -7.812 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.509 4.509 8 H 0.077 0.923 9 C 0.064 3.936 10 C -0.054 4.054 11 N -0.217 5.217 12 C -0.075 4.075 13 C -0.149 4.149 14 H 0.108 0.892 15 C -0.028 4.028 16 O -0.306 6.306 17 C -0.027 4.027 18 C -0.139 4.139 19 H 0.109 0.891 20 C -0.094 4.094 21 C -0.243 4.243 22 C -0.237 4.237 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.097 -1.592 -7.998 8.228 hybrid contribution -0.265 1.095 0.421 1.202 sum -1.362 -0.497 -7.577 7.715 Atomic orbital electron populations 1.69862 1.05762 1.26060 1.50489 1.24893 0.94715 0.98639 0.94688 0.86774 0.80694 0.84162 0.77949 1.19507 1.20430 1.21050 1.20575 0.93586 0.89272 1.47474 0.92313 1.18794 0.94449 0.88916 0.91478 1.21999 0.97061 0.99408 0.86908 1.65281 1.37860 1.16350 1.02189 1.23325 1.03844 0.89840 0.90477 1.23455 0.99490 0.93390 0.98557 0.89196 1.23614 0.94008 0.97159 0.87983 1.89178 1.72582 1.29805 1.39016 1.23777 0.96151 0.82770 0.99976 1.23222 0.96218 0.97276 0.97181 0.89103 1.23150 0.95050 0.99316 0.91849 1.22931 0.98542 1.07365 0.95423 1.22750 0.96083 1.01453 1.03444 0.93057 0.95343 0.88816 0.92199 0.88742 0.91991 0.89583 0.89499 0.92157 0.91276 0.94530 0.90625 0.92039 0.91537 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.95 9.67 55.43 0.54 -22.42 16 2 C 0.07 1.82 3.15 -17.82 -0.06 1.77 16 3 Si 0.88 19.96 29.07 -169.99 -4.94 15.02 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.47 -12.30 7.40 -34.44 -0.25 -12.55 16 8 H 0.06 1.57 7.83 -52.48 -0.41 1.16 16 9 C 0.06 1.57 1.94 -155.66 -0.30 1.26 16 10 C 0.07 1.69 4.58 -3.82 -0.02 1.67 16 11 N -0.49 -10.32 5.29 -230.21 -1.22 -11.54 16 12 C 0.05 1.10 4.14 -2.27 -0.01 1.09 16 13 C -0.13 -2.23 4.21 -87.91 -0.37 -2.61 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.05 0.81 7.19 37.89 0.27 1.08 16 16 O -0.39 -6.43 11.67 -35.23 -0.41 -6.84 16 17 C 0.05 0.72 7.28 37.89 0.28 1.00 16 18 C -0.12 -1.86 4.17 -87.91 -0.37 -2.23 16 19 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.03 0.60 5.93 -2.27 -0.01 0.59 16 21 C -0.20 -4.67 9.93 -26.73 -0.27 -4.94 16 22 C -0.20 -4.44 9.95 -26.73 -0.27 -4.71 16 23 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 24 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 25 H 0.09 2.37 5.14 -51.93 -0.27 2.10 16 26 H 0.06 1.36 5.32 -51.92 -0.28 1.08 16 27 H 0.09 2.18 5.65 -51.93 -0.29 1.89 16 28 H 0.06 1.08 7.14 -51.93 -0.37 0.71 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.87 7.14 -51.93 -0.37 0.50 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.64 7.00 -51.93 -0.36 0.28 16 34 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -26.44 281.66 -8.87 -35.31 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.70 Total: 4.79 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.37 Total: -18.56 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.68 Total: -33.96 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.41 Total: -6.84 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.94 Total: 15.02 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.44 -8.87 -35.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603039642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.796 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds