Wall clock time and date at job start Thu Apr 9 2020 12:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48499 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46899 * 299.99167 * 3 2 1 6 6 H 1.48498 * 109.47521 * 59.99600 * 3 2 1 7 7 C 1.37873 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99994 * 189.61507 * 7 2 1 9 9 C 1.50703 * 120.00103 * 9.34499 * 7 2 1 10 10 C 1.52996 * 115.54858 * 40.50532 * 9 7 2 11 11 N 1.46905 * 109.46870 * 64.40901 * 10 9 7 12 12 C 1.48505 * 110.99836 * 278.83459 * 11 10 9 13 13 C 1.54265 * 104.74231 * 200.67408 * 12 11 10 14 14 H 1.09001 * 113.16725 * 260.64015 * 13 12 11 15 15 C 1.54393 * 108.77856 * 134.58587 * 13 12 11 16 16 O 1.44378 * 104.91834 * 224.67639 * 15 13 12 17 17 C 1.45570 * 105.66552 * 40.46150 * 16 15 13 18 18 C 1.54397 * 104.33881 * 319.91485 * 17 16 15 19 19 H 1.08998 * 112.68170 * 260.58292 * 18 17 16 20 20 C 1.48509 * 110.99749 * 163.44139 * 11 10 9 21 21 C 1.53003 * 117.49763 * 254.79701 * 9 7 2 22 22 C 1.53001 * 60.00130 * 252.51254 * 21 9 7 23 23 H 0.96995 * 120.00308 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46815 * 184.40397 * 10 9 7 25 25 H 1.08996 * 109.47168 * 304.40518 * 10 9 7 26 26 H 1.09007 * 110.38133 * 319.48258 * 12 11 10 27 27 H 1.08997 * 110.38369 * 81.85064 * 12 11 10 28 28 H 1.09003 * 110.35057 * 343.53808 * 15 13 12 29 29 H 1.08999 * 110.34628 * 105.70957 * 15 13 12 30 30 H 1.09000 * 110.97259 * 201.08176 * 17 16 15 31 31 H 1.09000 * 110.28866 * 78.41293 * 17 16 15 32 32 H 1.08997 * 110.38701 * 278.14226 * 20 11 10 33 33 H 1.09000 * 110.38584 * 40.40360 * 20 11 10 34 34 H 1.09000 * 117.49691 * 0.02562 * 21 9 7 35 35 H 1.08995 * 117.49755 * 145.01597 * 21 9 7 36 36 H 1.08998 * 117.49628 * 252.51131 * 22 21 9 37 37 H 1.08999 * 117.51330 * 107.48390 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1568 9 6 1.2660 -2.4906 -0.2108 10 6 0.1658 -2.4577 -1.2735 11 7 0.7646 -2.2021 -2.5904 12 6 1.0271 -0.7533 -2.7836 13 6 1.1305 -0.5734 -4.3122 14 1 2.1591 -0.5341 -4.6707 15 6 0.3088 0.6673 -4.7234 16 8 -0.4321 0.2522 -5.8910 17 6 -0.8761 -1.1058 -5.6124 18 6 0.3291 -1.7652 -4.9079 19 1 0.9249 -2.3807 -5.5819 20 6 -0.1810 -2.5498 -3.6815 21 6 1.0419 -3.3832 1.0114 22 6 2.0601 -3.7892 -0.0559 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3522 -3.4166 -1.2899 25 1 -0.5440 -1.6651 -1.0371 26 1 0.2019 -0.1618 -2.3867 27 1 1.9637 -0.4698 -2.3036 28 1 -0.3738 0.9523 -3.9228 29 1 0.9721 1.4969 -4.9684 30 1 -1.1122 -1.6360 -6.5351 31 1 -1.7415 -1.0921 -4.9499 32 1 -0.1555 -3.6214 -3.8789 33 1 -1.1921 -2.2362 -3.4218 34 1 1.4282 -3.0325 1.9684 35 1 0.1103 -3.9471 1.0587 36 1 1.7985 -4.6203 -0.7108 37 1 3.1167 -3.7058 0.1986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603039642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:34 Heat of formation + Delta-G solvation = -20.951333 kcal Electronic energy + Delta-G solvation = -18103.239310 eV Core-core repulsion = 15459.846923 eV Total energy + Delta-G solvation = -2643.392387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23685 -38.81868 -36.90210 -34.24606 -32.39632 -31.53408 -27.81475 -27.01100 -26.77810 -23.64020 -22.89617 -22.12270 -20.93462 -20.48723 -18.06094 -17.79359 -16.68998 -16.49070 -16.42655 -15.81096 -15.57987 -15.12009 -14.73858 -14.25565 -14.09688 -13.46461 -13.27844 -13.13008 -12.89040 -12.69883 -12.35607 -12.16004 -12.00912 -11.90186 -11.78585 -11.65515 -11.52546 -11.09080 -10.87305 -10.83332 -10.48207 -9.96006 -9.03624 -8.00492 -6.08975 1.35895 1.42717 1.50396 2.41769 2.94607 3.01755 3.34478 3.47061 3.77687 3.79797 4.06361 4.11457 4.23796 4.32780 4.40924 4.50599 4.61333 4.70900 4.76628 4.80893 4.82986 4.88444 4.91059 4.98656 5.01533 5.17721 5.23842 5.30652 5.41811 5.44945 5.57429 5.60617 5.73714 5.94455 6.32846 6.48669 6.50917 6.88045 7.48446 8.95064 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.011089 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.745537 B = 2524.350948 C = 3419.397488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.048 3.952 3 Si 0.921 3.079 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.490 4.490 8 H 0.042 0.958 9 C 0.037 3.963 10 C 0.085 3.915 11 N -0.504 5.504 12 C 0.061 3.939 13 C -0.129 4.129 14 H 0.100 0.900 15 C 0.053 3.947 16 O -0.395 6.395 17 C 0.051 3.949 18 C -0.111 4.111 19 H 0.112 0.888 20 C 0.035 3.965 21 C -0.205 4.205 22 C -0.183 4.183 23 H 0.259 0.741 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -2.032 -9.473 9.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.152 4.152 3 Si 0.747 3.253 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.213 1.213 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.036 3.964 10 C -0.043 4.043 11 N -0.227 5.227 12 C -0.068 4.068 13 C -0.148 4.148 14 H 0.118 0.882 15 C -0.024 4.024 16 O -0.314 6.314 17 C -0.026 4.026 18 C -0.130 4.130 19 H 0.131 0.869 20 C -0.094 4.094 21 C -0.243 4.243 22 C -0.220 4.220 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.118 -2.098 -9.665 9.953 hybrid contribution -0.264 1.216 0.968 1.576 sum -1.381 -0.882 -8.698 8.851 Atomic orbital electron populations 1.69966 1.06535 1.26445 1.50646 1.25282 0.95175 1.00533 0.94203 0.86092 0.79619 0.81536 0.78041 1.19703 1.19361 1.21291 1.20645 0.92928 0.90760 1.48398 0.94005 1.18954 0.95676 0.89048 0.92706 1.21753 0.96061 0.98713 0.87811 1.65228 1.38970 1.16331 1.02165 1.23076 1.01311 0.89573 0.92800 1.23434 1.00623 0.94804 0.95954 0.88165 1.23538 0.93815 0.97351 0.87718 1.89176 1.72593 1.30927 1.38747 1.23917 0.95326 0.81909 1.01413 1.23243 0.96570 0.96504 0.96687 0.86939 1.23243 0.94139 1.00687 0.91284 1.22923 0.99401 1.07206 0.94804 1.22726 0.95759 1.00711 1.02836 0.93142 0.94575 0.91449 0.94543 0.91591 0.93598 0.88063 0.86295 0.92521 0.89482 0.94943 0.91580 0.90729 0.89862 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.38 9.67 21.45 0.21 -47.17 16 2 C 0.05 2.47 3.15 84.65 0.27 2.74 16 3 Si 0.92 41.29 29.07 68.60 1.99 43.28 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.49 -25.95 7.40 25.60 0.19 -25.76 16 8 H 0.04 2.29 7.83 -2.91 -0.02 2.27 16 9 C 0.04 1.79 1.94 -52.93 -0.10 1.69 16 10 C 0.08 3.87 4.58 86.30 0.39 4.27 16 11 N -0.50 -20.66 5.29 -882.25 -4.67 -25.33 16 12 C 0.06 2.51 4.14 86.42 0.36 2.87 16 13 C -0.13 -4.23 4.21 -9.04 -0.04 -4.27 16 14 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 15 C 0.05 1.66 7.19 72.46 0.52 2.18 16 16 O -0.40 -12.15 11.67 -148.98 -1.74 -13.89 16 17 C 0.05 1.31 7.28 72.46 0.53 1.84 16 18 C -0.11 -3.14 4.17 -9.04 -0.04 -3.18 16 19 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 20 C 0.03 1.12 5.93 86.42 0.51 1.64 16 21 C -0.20 -9.29 9.93 30.60 0.30 -8.98 16 22 C -0.18 -7.95 9.95 30.60 0.30 -7.64 16 23 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 24 H 0.04 1.55 7.95 -2.39 -0.02 1.53 16 25 H 0.07 3.46 5.14 -2.39 -0.01 3.45 16 26 H 0.04 1.68 5.32 -2.38 -0.01 1.67 16 27 H 0.07 3.08 5.65 -2.39 -0.01 3.07 16 28 H 0.05 1.59 7.14 -2.39 -0.02 1.57 16 29 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 1.52 7.14 -2.39 -0.02 1.50 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.03 1.09 7.00 -2.39 -0.02 1.07 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -55.82 281.66 0.04 -55.78 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.04 Total: 19.93 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.20 Total: -32.61 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -4.46 Total: -72.50 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.74 Total: -13.89 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.99 Total: 43.28 kcal Total: -55.82 0.04 -55.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603039642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.832 kcal (2) G-P(sol) polarization free energy of solvation -55.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds