Wall clock time and date at job start Thu Apr 9 2020 12:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37093 * 119.99715 * 2 1 4 4 H 1.08001 * 119.99516 * 204.39192 * 3 2 1 5 5 C 1.38947 * 120.00265 * 24.40511 * 3 2 1 6 6 N 1.31408 * 120.00129 * 12.63140 * 5 3 2 7 7 Si 1.86807 * 119.99857 * 192.63598 * 5 3 2 8 8 H 1.48496 * 109.47201 * 89.99600 * 7 5 3 9 9 H 1.48494 * 109.46802 * 209.99400 * 7 5 3 10 10 H 1.48501 * 109.47136 * 329.99657 * 7 5 3 11 11 C 1.34774 * 119.99927 * 180.02562 * 2 1 3 12 12 O 1.21287 * 120.00132 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99832 * 359.97438 * 11 2 1 14 14 C 1.52999 * 109.46980 * 180.02562 * 13 11 2 15 15 C 1.52999 * 109.47136 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47410 * 180.02562 * 15 14 13 17 17 C 1.36885 * 126.39475 * 270.03168 * 16 15 14 18 18 C 1.34664 * 106.81909 * 179.97438 * 17 16 15 19 19 N 1.34126 * 108.01767 * 359.97438 * 18 17 16 20 20 C 1.30497 * 109.26164 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.46879 * 265.85977 * 1 2 3 22 22 H 1.09001 * 109.47537 * 25.85544 * 1 2 3 23 23 H 1.08996 * 109.47726 * 145.85808 * 1 2 3 24 24 H 0.97003 * 119.99907 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47207 * 60.00036 * 13 11 2 26 26 H 1.08999 * 109.47443 * 300.00142 * 13 11 2 27 27 H 1.09005 * 109.47036 * 60.00141 * 14 13 11 28 28 H 1.09001 * 109.47502 * 300.00291 * 14 13 11 29 29 H 1.09000 * 109.47300 * 60.00546 * 15 14 13 30 30 H 1.08999 * 109.47366 * 299.99996 * 15 14 13 31 31 H 1.08007 * 126.59122 * 359.97438 * 17 16 15 32 32 H 1.08003 * 125.99447 * 180.26346 * 18 17 16 33 33 H 1.07995 * 125.65675 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2290 -0.3863 5 6 1.5488 2.3368 0.4972 6 7 0.4346 2.2490 1.1883 7 14 2.3238 4.0073 0.1829 8 1 1.7870 4.5721 -1.0812 9 1 2.0035 4.9211 1.3087 10 1 3.7969 3.8564 0.0714 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6352 -0.0005 15 6 1.6145 -4.9602 0.0001 16 7 2.5664 -6.0738 0.0007 17 6 3.0947 -6.6913 -1.1008 18 6 3.9194 -7.6553 -0.6490 19 7 3.8958 -7.6268 0.6917 20 6 3.0882 -6.6814 1.0880 21 1 -0.3633 -0.0742 1.0250 22 1 -0.3634 0.9248 -0.4482 23 1 -0.3634 -0.8505 -0.5767 24 1 0.0144 3.0516 1.5351 25 1 0.7583 -2.5298 -0.8903 26 1 0.7589 -2.5302 0.8897 27 1 3.0062 -3.5775 0.8895 28 1 3.0062 -3.5775 -0.8905 29 1 0.9876 -5.0183 -0.8897 30 1 0.9881 -5.0177 0.8903 31 1 2.8895 -6.4515 -2.1337 32 1 4.5017 -8.3299 -1.2593 33 1 2.8723 -6.4275 2.1152 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609169636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:36 Heat of formation + Delta-G solvation = 27.156330 kcal Electronic energy + Delta-G solvation = -16222.403569 eV Core-core repulsion = 13477.556943 eV Total energy + Delta-G solvation = -2744.846625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95624 -38.60449 -35.48565 -34.59164 -32.03168 -31.40945 -29.39618 -27.24518 -26.07389 -24.36440 -22.23531 -21.28124 -20.74277 -18.85177 -17.35583 -16.88712 -15.99336 -15.48835 -15.03141 -14.65168 -14.26526 -14.12863 -13.80326 -13.56994 -13.23030 -12.59442 -12.28189 -12.18073 -11.61503 -11.41251 -11.30473 -11.24843 -10.88693 -10.65584 -10.38296 -10.28408 -9.95187 -9.56304 -9.05578 -8.49184 -8.45566 -7.71460 -6.37230 -3.93698 2.10918 2.83326 3.13172 3.22282 3.22423 3.27941 3.84050 4.09878 4.62284 4.65725 4.75821 4.91771 5.06327 5.15639 5.16783 5.42562 5.51737 5.53105 5.71870 5.79491 5.97778 6.18377 6.31484 6.38168 6.45264 6.76807 6.78180 7.12633 7.21867 7.52438 8.09776 8.11045 8.43871 9.14416 9.37712 9.93396 10.67861 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060734 B = 0.004314 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.914197 B = 6489.140007 C = 6696.908261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.308 4.308 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.445 3.555 12 O -0.590 6.590 13 C -0.127 4.127 14 C -0.113 4.113 15 C 0.102 3.898 16 N -0.454 5.454 17 C -0.055 4.055 18 C -0.037 4.037 19 N -0.502 5.502 20 C 0.181 3.819 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.025 0.975 24 H 0.268 0.732 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -11.704 -3.159 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.166 5.166 3 C -0.436 4.436 4 H 0.115 0.885 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.233 3.767 12 O -0.476 6.476 13 C -0.168 4.168 14 C -0.152 4.152 15 C -0.021 4.021 16 N -0.135 5.135 17 C -0.188 4.188 18 C -0.185 4.185 19 N -0.220 5.220 20 C -0.101 4.101 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.189 0.811 32 H 0.184 0.816 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.748 -11.944 -2.546 12.518 hybrid contribution -0.423 1.566 -0.590 1.726 sum -3.171 -10.379 -3.136 11.296 Atomic orbital electron populations 1.21475 0.81291 0.99900 1.00551 1.43592 1.05450 1.04840 1.62723 1.19659 1.00633 0.84232 1.39089 0.88485 1.25343 0.96632 1.00165 0.95085 1.69985 1.19271 1.29654 1.33326 0.85927 0.79707 0.81247 0.77859 1.20350 1.20904 1.19338 1.20004 0.88061 0.84875 0.83803 1.90527 1.14059 1.87181 1.55789 1.21442 0.98525 0.93874 1.02928 1.21630 0.98179 0.90711 1.04675 1.22083 0.90614 0.84809 1.04552 1.45657 1.34367 1.26582 1.06923 1.22749 1.03378 0.99769 0.92940 1.22259 1.03255 1.01667 0.91330 1.70262 1.19537 1.20043 1.12164 1.24985 0.97259 0.94046 0.93843 0.93007 0.90748 0.95615 0.92230 0.90347 0.90051 0.90577 0.90725 0.89064 0.88768 0.81107 0.81637 0.78078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.44 59.85 0.51 2.88 16 2 N -0.45 -11.19 3.01 -122.20 -0.37 -11.56 16 3 C -0.31 -8.53 9.24 -14.94 -0.14 -8.67 16 4 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 5 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 6 N -0.88 -23.24 10.83 55.50 0.60 -22.63 16 7 Si 0.93 20.58 29.57 -169.99 -5.03 15.55 16 8 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 C 0.44 10.40 7.63 -10.99 -0.08 10.32 16 12 O -0.59 -16.11 15.69 5.55 0.09 -16.02 16 13 C -0.13 -2.03 4.31 -27.88 -0.12 -2.15 16 14 C -0.11 -1.64 4.83 -26.73 -0.13 -1.76 16 15 C 0.10 1.05 6.15 -4.04 -0.02 1.03 16 16 N -0.45 -5.47 2.75 -118.58 -0.33 -5.80 16 17 C -0.05 -0.65 11.58 -16.56 -0.19 -0.84 16 18 C -0.04 -0.48 11.87 -17.81 -0.21 -0.69 16 19 N -0.50 -7.45 11.25 -14.67 -0.17 -7.61 16 20 C 0.18 2.33 12.56 -90.38 -1.14 1.19 16 21 H 0.05 1.13 7.83 -51.93 -0.41 0.72 16 22 H 0.07 1.70 6.80 -51.93 -0.35 1.34 16 23 H 0.03 0.43 6.61 -51.93 -0.34 0.09 16 24 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 25 H 0.08 1.08 7.41 -51.93 -0.38 0.69 16 26 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 27 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.20 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 285.25 15.07 4.30 4.30 Total: -1.00 -33.26 285.25 -6.91 -40.17 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.39 Total: 1.59 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.62 Total: 2.02 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.26 Total: -47.60 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.26 -6.91 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609169636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.322 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds