Wall clock time and date at job start Thu Apr 9 2020 12:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00566 * 2 1 4 4 H 1.48498 * 109.47594 * 240.00494 * 3 2 1 5 5 H 1.48507 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47331 * 119.99686 * 3 2 1 7 7 C 1.37883 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47166 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00214 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99937 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99976 * 179.97438 * 12 11 10 15 15 H 1.08999 * 115.57590 * 61.46981 * 14 12 11 16 16 C 1.53087 * 117.50543 * 207.22306 * 14 12 11 17 17 C 1.52547 * 59.89119 * 107.45483 * 16 14 12 18 18 C 1.53881 * 120.82643 * 110.20604 * 17 16 14 19 19 C 1.54993 * 104.18076 * 167.71200 * 18 17 16 20 20 C 1.54927 * 102.81907 * 322.35343 * 19 18 17 21 21 C 1.53842 * 121.25128 * 249.47888 * 17 16 14 22 22 H 0.96998 * 119.99377 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46932 * 60.00638 * 9 7 2 24 24 H 1.08996 * 109.47717 * 300.00509 * 9 7 2 25 25 H 1.08994 * 109.47055 * 60.00169 * 10 9 7 26 26 H 1.09008 * 109.47279 * 300.00441 * 10 9 7 27 27 H 0.97002 * 120.00113 * 359.97438 * 11 10 9 28 28 H 1.08997 * 117.51430 * 359.97438 * 16 14 12 29 29 H 1.09002 * 117.50617 * 214.90894 * 16 14 12 30 30 H 1.09003 * 110.50923 * 48.99716 * 18 17 16 31 31 H 1.09003 * 110.50639 * 286.42294 * 18 17 16 32 32 H 1.08993 * 110.74145 * 80.68585 * 19 18 17 33 33 H 1.09004 * 110.74101 * 204.02579 * 19 18 17 34 34 H 1.08989 * 110.48501 * 156.41624 * 20 19 18 35 35 H 1.09005 * 110.48474 * 278.91855 * 20 19 18 36 36 H 1.08997 * 110.04115 * 96.69613 * 21 17 16 37 37 H 1.09005 * 110.10639 * 335.21796 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0007 13 8 3.3993 -6.0981 -0.0003 14 6 1.4328 -7.4031 -0.0008 15 1 0.7912 -7.5759 -0.8648 16 6 2.1247 -8.6191 0.6208 17 6 0.9635 -7.9459 1.3456 18 6 -0.3977 -8.6510 1.4794 19 6 -1.1647 -7.8008 2.5239 20 6 -0.0538 -7.4075 3.5296 21 6 1.1857 -7.1532 2.6452 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5572 0.8896 25 1 2.8718 -3.6045 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.5426 -4.9308 -0.0011 28 1 3.1249 -8.4751 1.0293 29 1 1.9380 -9.5918 0.1656 30 1 -0.2655 -9.6712 1.8400 31 1 -0.9240 -8.6495 0.5249 32 1 -1.5958 -6.9144 2.0587 33 1 -1.9362 -8.3950 3.0138 34 1 -0.3304 -6.5013 4.0683 35 1 0.1345 -8.2229 4.2281 36 1 1.2752 -6.0897 2.4234 37 1 2.0847 -7.5064 3.1505 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612061204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:45 Heat of formation + Delta-G solvation = -43.473310 kcal Electronic energy + Delta-G solvation = -16694.328627 eV Core-core repulsion = 14049.959614 eV Total energy + Delta-G solvation = -2644.369013 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07403 -38.00902 -34.89180 -34.05083 -32.80095 -29.68953 -28.81418 -25.99545 -25.07031 -23.23224 -20.89946 -20.81376 -20.02890 -18.75344 -16.80744 -16.30454 -15.68036 -15.43175 -15.04673 -14.53327 -14.33447 -13.77447 -13.38936 -13.07055 -12.72285 -12.43983 -12.28658 -12.04859 -11.20807 -11.17907 -11.14644 -11.01811 -10.99391 -10.67262 -10.65249 -10.33168 -10.29497 -9.91556 -9.65369 -9.41449 -9.13641 -8.52138 -8.33279 -6.08991 -4.11873 2.92187 3.31398 3.35111 3.37954 3.54791 3.84335 4.37432 4.44023 4.53240 4.74385 4.79901 5.10959 5.11679 5.27967 5.36867 5.37015 5.55414 5.66559 5.71305 5.73832 5.82710 5.88448 6.00712 6.05431 6.09536 6.20722 6.30511 6.35826 6.36951 6.74702 6.95959 7.52326 7.62315 7.89183 8.06507 8.28664 8.70724 8.93948 9.52873 11.02588 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.004979 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.029603 B = 5621.949811 C = 6103.673770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.014 3.986 10 C 0.121 3.879 11 N -0.717 5.717 12 C 0.536 3.464 13 O -0.551 6.551 14 C -0.176 4.176 15 H 0.125 0.875 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.096 4.096 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.398 0.602 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -17.032 3.876 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.366 5.366 12 C 0.321 3.679 13 O -0.429 6.429 14 C -0.197 4.197 15 H 0.142 0.858 16 C -0.175 4.175 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.133 4.133 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.232 0.768 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.339 -16.867 3.877 17.464 hybrid contribution -0.054 1.016 -0.170 1.031 sum -2.393 -15.851 3.707 16.453 Atomic orbital electron populations 1.69947 1.06088 1.26967 1.50319 1.24990 0.94885 0.99374 0.94967 0.86575 0.79527 0.82664 0.78787 1.20105 1.21225 1.20114 1.21021 0.93197 0.90427 1.51460 0.92336 1.19311 0.94172 0.91087 0.97818 1.21722 0.96060 0.81628 1.00695 1.46299 1.10547 1.06339 1.73444 1.19582 0.87487 0.84559 0.76236 1.90660 1.13992 1.87711 1.50563 1.22413 1.04573 0.94152 0.98552 0.85752 1.22957 0.97475 0.95161 1.01951 1.21900 0.95955 1.01056 0.91884 1.21921 0.92791 0.98412 0.99462 1.22492 0.97273 0.99839 0.96514 1.22327 0.94811 1.01312 0.97443 1.21776 0.98294 1.00147 0.93081 0.92796 0.95970 0.95957 0.92666 0.92638 0.76840 0.87826 0.88203 0.91032 0.91459 0.91031 0.91565 0.91360 0.91746 0.90900 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 11 N -0.72 -12.88 5.45 -60.30 -0.33 -13.21 16 12 C 0.54 9.45 6.30 -10.98 -0.07 9.38 16 13 O -0.55 -11.82 16.61 5.56 0.09 -11.72 16 14 C -0.18 -2.31 6.01 -91.95 -0.55 -2.87 16 15 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 16 C -0.14 -1.62 9.78 -26.92 -0.26 -1.88 16 17 C -0.11 -1.23 2.45 -154.07 -0.38 -1.61 16 18 C -0.09 -0.81 6.57 -25.22 -0.17 -0.98 16 19 C -0.12 -1.14 6.91 -24.66 -0.17 -1.31 16 20 C -0.12 -1.23 6.84 -24.99 -0.17 -1.40 16 21 C -0.10 -1.17 6.21 -25.57 -0.16 -1.33 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 27 H 0.40 6.32 8.47 -40.82 -0.35 5.97 16 28 H 0.10 1.37 7.93 -51.93 -0.41 0.96 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.70 8.14 -51.94 -0.42 0.28 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.06 7.18 -51.93 -0.37 0.69 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -31.12 308.00 -8.55 -39.67 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.17 Total: 2.17 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.50 Total: -12.52 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.41 Total: -38.68 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.12 -8.55 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.800 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds