Wall clock time and date at job start Thu Apr 9 2020 12:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47148 * 264.70634 * 3 2 1 5 5 H 1.48509 * 109.46781 * 24.70499 * 3 2 1 6 6 H 1.48496 * 109.47330 * 144.70179 * 3 2 1 7 7 C 1.40045 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00192 * 355.26051 * 7 2 1 9 9 C 1.46378 * 120.00092 * 175.26844 * 7 2 1 10 10 O 1.21697 * 119.99581 * 350.28793 * 9 7 2 11 11 N 1.34771 * 120.00229 * 170.28707 * 9 7 2 12 12 C 1.46507 * 119.99887 * 186.30434 * 11 9 7 13 13 C 1.52996 * 117.49695 * 16.12288 * 12 11 9 14 14 C 1.52995 * 117.49815 * 307.46446 * 12 11 9 15 15 C 1.46502 * 120.00270 * 6.30667 * 11 9 7 16 16 C 1.52997 * 109.46727 * 297.85876 * 15 11 9 17 17 C 1.53006 * 109.46963 * 179.97438 * 16 15 11 18 18 C 1.53002 * 109.47077 * 300.00390 * 17 16 15 19 19 C 1.52999 * 109.47242 * 59.99739 * 18 17 16 20 20 C 1.53000 * 109.47179 * 299.99630 * 19 18 17 21 21 H 0.97001 * 120.00175 * 359.97438 * 1 2 3 22 22 H 1.08999 * 115.54718 * 161.79471 * 12 11 9 23 23 H 1.09000 * 117.50350 * 359.97438 * 13 12 11 24 24 H 1.09002 * 117.49714 * 145.02003 * 13 12 11 25 25 H 1.09006 * 117.49736 * 214.98253 * 14 12 11 26 26 H 1.09000 * 117.50277 * 359.97022 * 14 12 11 27 27 H 1.08998 * 109.47147 * 177.85712 * 15 11 9 28 28 H 1.08995 * 109.47672 * 299.99573 * 16 15 11 29 29 H 1.08998 * 109.47440 * 60.00016 * 16 15 11 30 30 H 1.08993 * 109.47403 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.46706 * 59.99962 * 17 16 15 32 32 H 1.08998 * 109.47003 * 299.99390 * 18 17 16 33 33 H 1.08997 * 109.47167 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.46900 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47406 * 59.99898 * 19 18 17 36 36 H 1.08999 * 109.47671 * 300.00583 * 20 19 18 37 37 H 1.08996 * 109.47048 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.6002 1.9818 -1.3941 5 1 1.3867 2.6824 0.5852 6 1 3.4778 1.4751 0.8090 7 6 2.0069 -1.2129 -0.0005 8 1 1.4696 -2.1466 0.0763 9 6 3.4669 -1.2151 -0.1051 10 8 4.0596 -0.1852 -0.3682 11 7 4.1548 -2.3575 0.0899 12 6 5.6193 -2.3343 0.1224 13 6 6.3003 -0.9770 0.3092 14 6 6.3416 -1.6734 -1.0533 15 6 3.4381 -3.6226 0.2694 16 6 2.5699 -3.5429 1.5266 17 6 1.8209 -4.8639 1.7137 18 6 0.9321 -5.1232 0.4956 19 6 1.8004 -5.2028 -0.7616 20 6 2.5493 -3.8818 -0.9487 21 1 -0.4850 0.8400 0.0004 22 1 6.0932 -3.2024 0.5805 23 1 5.6588 -0.1012 0.4075 24 1 7.2225 -0.9523 0.8899 25 1 7.2909 -2.1066 -1.3685 26 1 5.7273 -1.2563 -1.8512 27 1 4.1567 -4.4354 0.3749 28 1 3.2030 -3.3578 2.3943 29 1 1.8514 -2.7300 1.4211 30 1 1.2027 -4.8073 2.6096 31 1 2.5392 -5.6769 1.8191 32 1 0.2139 -4.3101 0.3903 33 1 0.3989 -6.0645 0.6287 34 1 1.1671 -5.3871 -1.6294 35 1 2.5187 -6.0159 -0.6562 36 1 1.8311 -3.0687 -1.0541 37 1 3.1682 -3.9388 -1.8441 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613906949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:48 Heat of formation + Delta-G solvation = -12.421299 kcal Electronic energy + Delta-G solvation = -18193.368982 eV Core-core repulsion = 15550.346486 eV Total energy + Delta-G solvation = -2643.022497 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.49674 -37.32414 -35.26810 -32.95418 -32.67923 -30.16906 -28.08132 -26.82956 -22.45491 -22.03464 -21.74349 -21.56518 -19.50839 -18.46608 -17.07722 -15.81736 -15.13659 -14.72010 -14.31948 -13.80161 -13.58642 -13.41068 -12.96289 -12.85956 -12.30615 -12.13869 -11.95442 -11.67293 -11.62871 -11.09241 -10.82413 -10.64552 -10.56764 -10.45653 -10.24712 -10.00862 -9.80260 -9.55698 -9.45514 -8.99676 -8.82915 -7.53609 -7.25055 -6.59307 -4.81100 3.44686 3.51952 3.78836 4.09217 4.14902 4.57247 4.66985 5.25345 5.27832 5.42275 5.46778 5.55659 5.63261 5.75437 5.77955 5.86807 5.93335 6.07941 6.10371 6.12100 6.17554 6.27475 6.33118 6.45730 6.56323 6.66789 6.76086 6.80429 6.89158 7.07962 7.12347 7.19784 7.28148 7.76801 7.96949 8.35861 8.71976 9.16291 10.07114 10.37497 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.013136 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.519269 B = 2130.965780 C = 3199.895686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.099 3.901 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.328 1.328 6 H -0.256 1.256 7 C -0.539 4.539 8 H 0.117 0.883 9 C 0.554 3.446 10 O -0.607 6.607 11 N -0.604 5.604 12 C 0.086 3.914 13 C -0.199 4.199 14 C -0.196 4.196 15 C 0.175 3.825 16 C -0.158 4.158 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.154 4.154 21 H 0.281 0.719 22 H 0.107 0.893 23 H 0.144 0.856 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -8.845 1.459 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.119 4.119 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.260 1.260 6 H -0.181 1.181 7 C -0.574 4.574 8 H 0.134 0.866 9 C 0.364 3.636 10 O -0.500 6.500 11 N -0.334 5.334 12 C -0.020 4.020 13 C -0.236 4.236 14 C -0.236 4.236 15 C 0.071 3.929 16 C -0.195 4.195 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.192 4.192 21 H 0.091 0.909 22 H 0.125 0.875 23 H 0.161 0.839 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.267 -8.331 1.329 9.453 hybrid contribution 0.443 0.450 -0.069 0.635 sum 4.709 -7.881 1.260 9.267 Atomic orbital electron populations 1.69541 1.07890 1.29982 1.38318 1.25816 0.94782 1.02130 0.89182 0.85279 0.77978 0.77268 0.79752 1.20904 1.26025 1.18112 1.21361 0.88640 0.96066 1.51347 0.86610 1.18327 0.88753 0.80530 0.75986 1.90064 1.70201 1.32186 1.57561 1.47105 1.02441 1.07983 1.75828 1.21326 0.81986 0.96570 1.02071 1.23900 1.01415 0.99875 0.98434 1.23182 1.01114 1.05803 0.93469 1.20582 0.92744 0.84949 0.94646 1.22464 1.00880 0.99405 0.96801 1.21454 0.98234 0.97562 0.97618 1.21544 0.98276 1.01129 0.94860 1.21447 0.98313 0.97480 0.97583 1.22376 1.00526 0.99076 0.97199 0.90869 0.87547 0.83910 0.91073 0.90371 0.88721 0.92096 0.93040 0.86493 0.92499 0.93254 0.91156 0.93014 0.92488 0.93138 0.87095 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.58 13.92 55.55 0.77 -21.80 16 2 C 0.10 2.70 5.52 -17.37 -0.10 2.60 16 3 Si 0.96 24.98 26.02 -169.99 -4.42 20.55 16 4 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 5 H -0.33 -8.23 7.11 56.52 0.40 -7.83 16 6 H -0.26 -6.94 6.27 56.52 0.35 -6.58 16 7 C -0.54 -14.17 6.77 -35.63 -0.24 -14.41 16 8 H 0.12 2.95 3.48 -52.48 -0.18 2.76 16 9 C 0.55 14.07 6.73 -12.99 -0.09 13.98 16 10 O -0.61 -16.57 7.64 5.19 0.04 -16.53 16 11 N -0.60 -12.92 2.79 -160.22 -0.45 -13.37 16 12 C 0.09 1.65 6.56 -67.93 -0.45 1.20 16 13 C -0.20 -3.92 9.63 -26.70 -0.26 -4.17 16 14 C -0.20 -3.68 9.88 -26.70 -0.26 -3.95 16 15 C 0.18 3.21 2.56 -67.93 -0.17 3.04 16 16 C -0.16 -2.85 5.01 -26.73 -0.13 -2.99 16 17 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 18 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 19 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 20 C -0.15 -2.79 4.96 -26.73 -0.13 -2.93 16 21 H 0.28 7.18 8.29 -40.82 -0.34 6.84 16 22 H 0.11 1.71 8.02 -51.93 -0.42 1.30 16 23 H 0.14 3.40 5.21 -52.15 -0.27 3.13 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.09 2.03 7.61 -51.93 -0.39 1.64 16 27 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.12 2.53 4.49 -51.93 -0.23 2.30 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 2.40 4.63 -51.93 -0.24 2.16 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -28.43 277.24 -7.74 -36.17 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.56 Total: 3.95 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.31 Total: -13.15 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.33 Total: -35.17 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.04 Total: -16.53 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.42 Total: 20.55 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.43 -7.74 -36.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613906949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.752 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds