Wall clock time and date at job start Thu Apr 9 2020 12:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47148 * 264.70634 * 3 2 1 5 5 H 1.48509 * 109.46781 * 24.70499 * 3 2 1 6 6 H 1.48496 * 109.47330 * 144.70179 * 3 2 1 7 7 C 1.40045 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00192 * 355.26051 * 7 2 1 9 9 C 1.46378 * 120.00092 * 175.26844 * 7 2 1 10 10 O 1.21697 * 119.99581 * 350.28793 * 9 7 2 11 11 N 1.34771 * 120.00229 * 170.28707 * 9 7 2 12 12 C 1.46507 * 119.99887 * 186.30434 * 11 9 7 13 13 C 1.52996 * 117.49695 * 16.12288 * 12 11 9 14 14 C 1.52995 * 117.49815 * 307.46446 * 12 11 9 15 15 C 1.46502 * 120.00270 * 6.30667 * 11 9 7 16 16 C 1.52997 * 109.46727 * 297.85876 * 15 11 9 17 17 C 1.53006 * 109.46963 * 179.97438 * 16 15 11 18 18 C 1.53002 * 109.47077 * 300.00390 * 17 16 15 19 19 C 1.52999 * 109.47242 * 59.99739 * 18 17 16 20 20 C 1.53000 * 109.47179 * 299.99630 * 19 18 17 21 21 H 0.97001 * 120.00175 * 359.97438 * 1 2 3 22 22 H 1.08999 * 115.54718 * 161.79471 * 12 11 9 23 23 H 1.09000 * 117.50350 * 359.97438 * 13 12 11 24 24 H 1.09002 * 117.49714 * 145.02003 * 13 12 11 25 25 H 1.09006 * 117.49736 * 214.98253 * 14 12 11 26 26 H 1.09000 * 117.50277 * 359.97022 * 14 12 11 27 27 H 1.08998 * 109.47147 * 177.85712 * 15 11 9 28 28 H 1.08995 * 109.47672 * 299.99573 * 16 15 11 29 29 H 1.08998 * 109.47440 * 60.00016 * 16 15 11 30 30 H 1.08993 * 109.47403 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.46706 * 59.99962 * 17 16 15 32 32 H 1.08998 * 109.47003 * 299.99390 * 18 17 16 33 33 H 1.08997 * 109.47167 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.46900 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47406 * 59.99898 * 19 18 17 36 36 H 1.08999 * 109.47671 * 300.00583 * 20 19 18 37 37 H 1.08996 * 109.47048 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.6002 1.9818 -1.3941 5 1 1.3867 2.6824 0.5852 6 1 3.4778 1.4751 0.8090 7 6 2.0069 -1.2129 -0.0005 8 1 1.4696 -2.1466 0.0763 9 6 3.4669 -1.2151 -0.1051 10 8 4.0596 -0.1852 -0.3682 11 7 4.1548 -2.3575 0.0899 12 6 5.6193 -2.3343 0.1224 13 6 6.3003 -0.9770 0.3092 14 6 6.3416 -1.6734 -1.0533 15 6 3.4381 -3.6226 0.2694 16 6 2.5699 -3.5429 1.5266 17 6 1.8209 -4.8639 1.7137 18 6 0.9321 -5.1232 0.4956 19 6 1.8004 -5.2028 -0.7616 20 6 2.5493 -3.8818 -0.9487 21 1 -0.4850 0.8400 0.0004 22 1 6.0932 -3.2024 0.5805 23 1 5.6588 -0.1012 0.4075 24 1 7.2225 -0.9523 0.8899 25 1 7.2909 -2.1066 -1.3685 26 1 5.7273 -1.2563 -1.8512 27 1 4.1567 -4.4354 0.3749 28 1 3.2030 -3.3578 2.3943 29 1 1.8514 -2.7300 1.4211 30 1 1.2027 -4.8073 2.6096 31 1 2.5392 -5.6769 1.8191 32 1 0.2139 -4.3101 0.3903 33 1 0.3989 -6.0645 0.6287 34 1 1.1671 -5.3871 -1.6294 35 1 2.5187 -6.0159 -0.6562 36 1 1.8311 -3.0687 -1.0541 37 1 3.1682 -3.9388 -1.8441 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613906949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:48 Heat of formation + Delta-G solvation = -28.862543 kcal Electronic energy + Delta-G solvation = -18194.081928 eV Core-core repulsion = 15550.346486 eV Total energy + Delta-G solvation = -2643.735442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.16899 -38.82905 -37.03062 -34.87223 -34.36801 -31.47969 -29.56317 -28.83536 -24.19643 -23.38911 -23.13529 -23.04230 -20.99810 -20.21220 -18.90964 -17.57325 -16.87963 -16.53069 -15.70745 -15.43689 -14.91918 -14.83749 -14.71884 -14.56145 -14.13413 -14.03415 -13.50859 -13.24688 -13.02086 -12.93156 -12.68817 -12.20380 -12.03037 -11.90821 -11.76530 -11.54831 -11.34246 -11.11803 -10.91472 -10.89387 -10.54787 -9.53363 -8.96029 -8.69129 -6.86020 1.31834 1.38704 1.66184 2.11248 2.34396 2.61628 3.07804 3.45520 3.92569 4.04090 4.10854 4.13029 4.20057 4.30725 4.42001 4.55186 4.57640 4.74344 4.79895 4.81815 4.84378 4.87040 5.05131 5.16839 5.20375 5.24091 5.38843 5.41056 5.46372 5.54990 5.57602 5.62323 5.72332 5.92054 6.19051 6.46514 6.69698 7.24219 8.10058 8.31539 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.013136 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.519269 B = 2130.965780 C = 3199.895686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.068 3.932 3 Si 1.003 2.997 4 H -0.299 1.299 5 H -0.315 1.315 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.121 0.879 9 C 0.547 3.453 10 O -0.631 6.631 11 N -0.605 5.605 12 C 0.082 3.918 13 C -0.210 4.210 14 C -0.187 4.187 15 C 0.170 3.830 16 C -0.153 4.153 17 C -0.104 4.104 18 C -0.120 4.120 19 C -0.103 4.103 20 C -0.150 4.150 21 H 0.287 0.713 22 H 0.152 0.848 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -11.709 2.025 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.147 4.147 3 Si 0.838 3.162 4 H -0.227 1.227 5 H -0.246 1.246 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.138 0.862 9 C 0.356 3.644 10 O -0.526 6.526 11 N -0.334 5.334 12 C -0.023 4.023 13 C -0.247 4.247 14 C -0.226 4.226 15 C 0.067 3.933 16 C -0.191 4.191 17 C -0.142 4.142 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.188 4.188 21 H 0.097 0.903 22 H 0.169 0.831 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.137 0.863 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.756 -11.212 1.903 12.746 hybrid contribution 0.046 1.307 -0.258 1.333 sum 5.802 -9.904 1.645 11.596 Atomic orbital electron populations 1.69550 1.08060 1.30560 1.39925 1.26197 0.95227 1.03410 0.89844 0.84718 0.76609 0.76762 0.78123 1.22713 1.24613 1.20519 1.21676 0.89615 0.96189 1.50631 0.86155 1.18347 0.88731 0.81508 0.75850 1.90078 1.70619 1.33554 1.58301 1.47141 1.03929 1.07862 1.74430 1.21797 0.80488 0.97652 1.02388 1.23720 1.02297 0.98636 1.00082 1.23142 1.02185 1.05267 0.91990 1.20871 0.93388 0.84357 0.94645 1.22325 1.00080 1.00039 0.96700 1.21423 0.98560 0.96327 0.97844 1.21537 0.97888 1.01384 0.94902 1.21418 0.98646 0.96122 0.97903 1.22253 0.99722 0.99668 0.97139 0.90276 0.83090 0.88464 0.87625 0.86300 0.92380 0.88476 0.93052 0.90750 0.91884 0.90285 0.94321 0.90102 0.91875 0.90203 0.91366 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.64 13.92 21.83 0.30 -47.34 16 2 C 0.07 3.85 5.52 85.30 0.47 4.32 16 3 Si 1.00 53.34 26.02 68.60 1.79 55.12 16 4 H -0.30 -16.55 7.11 99.48 0.71 -15.84 16 5 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 6 H -0.28 -15.69 6.27 99.48 0.62 -15.07 16 7 C -0.55 -29.63 6.77 24.83 0.17 -29.47 16 8 H 0.12 6.37 3.48 -2.91 -0.01 6.36 16 9 C 0.55 28.40 6.73 86.36 0.58 28.98 16 10 O -0.63 -35.58 7.64 -4.34 -0.03 -35.61 16 11 N -0.61 -25.27 2.79 -779.03 -2.17 -27.44 16 12 C 0.08 2.88 6.56 44.99 0.30 3.18 16 13 C -0.21 -7.97 9.63 30.62 0.29 -7.67 16 14 C -0.19 -6.62 9.88 30.62 0.30 -6.32 16 15 C 0.17 5.86 2.56 44.99 0.12 5.98 16 16 C -0.15 -5.33 5.01 30.60 0.15 -5.17 16 17 C -0.10 -2.76 5.92 30.60 0.18 -2.57 16 18 C -0.12 -3.24 5.92 30.59 0.18 -3.06 16 19 C -0.10 -2.75 5.92 30.59 0.18 -2.57 16 20 C -0.15 -5.25 4.96 30.60 0.15 -5.10 16 21 H 0.29 14.98 8.29 -92.71 -0.77 14.21 16 22 H 0.15 4.03 8.02 -2.39 -0.02 4.01 16 23 H 0.10 4.73 5.21 -5.87 -0.03 4.70 16 24 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 25 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 26 H 0.06 2.49 7.61 -2.39 -0.02 2.48 16 27 H 0.10 2.70 7.84 -2.39 -0.02 2.68 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 3.27 4.49 -2.39 -0.01 3.26 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 3.02 4.63 -2.39 -0.01 3.00 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -64.54 277.24 3.92 -60.62 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.96 Total: 14.13 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.08 Total: -19.48 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.87 Total: -74.78 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.03 Total: -35.61 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 1.79 Total: 55.12 kcal Total: -64.54 3.92 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613906949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.757 kcal (2) G-P(sol) polarization free energy of solvation -64.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds