Wall clock time and date at job start Thu Apr 9 2020 12:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99825 * 2 1 4 4 H 1.48494 * 109.47152 * 269.99896 * 3 2 1 5 5 H 1.48499 * 109.47004 * 30.00165 * 3 2 1 6 6 H 1.48500 * 109.46785 * 150.00131 * 3 2 1 7 7 C 1.37879 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99825 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99968 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.46982 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00127 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.52951 * 109.41251 * 180.02562 * 13 11 10 15 15 C 1.53179 * 109.44734 * 176.90938 * 14 13 11 16 16 C 1.53147 * 108.88655 * 56.56620 * 15 14 13 17 17 C 1.52841 * 117.67569 * 91.49469 * 16 15 14 18 18 C 1.52806 * 117.74825 * 160.37823 * 16 15 14 19 19 C 1.53147 * 115.00654 * 306.06267 * 16 15 14 20 20 C 1.52934 * 109.41196 * 59.64924 * 13 11 10 21 21 H 0.96995 * 120.00060 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46871 * 60.00311 * 9 7 2 23 23 H 1.09002 * 109.47178 * 300.00581 * 9 7 2 24 24 H 0.97003 * 120.00549 * 0.02562 * 10 9 7 25 25 H 1.09005 * 109.35412 * 299.82213 * 13 11 10 26 26 H 1.08998 * 109.47971 * 56.90627 * 14 13 11 27 27 H 1.09004 * 109.46635 * 296.89817 * 14 13 11 28 28 H 1.09001 * 109.56649 * 296.74231 * 15 14 13 29 29 H 1.08999 * 109.56825 * 176.39267 * 15 14 13 30 30 H 1.09002 * 117.50783 * 0.27023 * 17 16 15 31 31 H 1.09008 * 117.50386 * 215.22396 * 17 16 15 32 32 H 1.09001 * 117.50504 * 144.89350 * 18 16 15 33 33 H 1.09001 * 117.52712 * 359.83898 * 18 16 15 34 34 H 1.08996 * 109.57213 * 173.75440 * 19 16 15 35 35 H 1.08998 * 109.56916 * 294.11313 * 19 16 15 36 36 H 1.09005 * 109.47136 * 303.08157 * 20 13 11 37 37 H 1.08995 * 109.47675 * 63.09462 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1049 0.0000 13 6 2.7332 -6.0288 0.0006 14 6 1.9671 -7.3526 0.0004 15 6 2.9601 -8.5164 -0.0768 16 6 3.9441 -8.4069 1.0915 17 6 3.5930 -9.1389 2.3865 18 6 4.7175 -9.6630 1.4905 19 6 4.6630 -7.0597 1.2083 20 6 3.6174 -5.9409 1.2453 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.1568 -3.4354 -0.0002 25 1 3.3568 -5.9713 -0.8917 26 1 1.2998 -7.3863 -0.8607 27 1 1.3824 -7.4340 0.9168 28 1 3.5055 -8.4689 -1.0193 29 1 2.4207 -9.4614 -0.0126 30 1 2.6615 -9.7046 2.4083 31 1 3.8773 -8.6646 3.3258 32 1 5.7416 -9.5336 1.8405 33 1 4.5260 -10.5739 0.9232 34 1 5.2527 -7.0387 2.1248 35 1 5.3173 -6.9192 0.3479 36 1 4.1201 -4.9739 1.2664 37 1 3.0008 -6.0496 2.1375 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695662898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:53 Heat of formation + Delta-G solvation = -66.438343 kcal Electronic energy + Delta-G solvation = -16803.238327 eV Core-core repulsion = 14157.873476 eV Total energy + Delta-G solvation = -2645.364851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16959 -39.55392 -36.19637 -35.61464 -34.32127 -31.84767 -29.94948 -28.32862 -24.93639 -23.74570 -23.37675 -22.66518 -21.06103 -19.55523 -18.95424 -17.57566 -17.05439 -16.40472 -16.21600 -16.14751 -15.53525 -14.89029 -14.61070 -14.35308 -14.10787 -13.98844 -13.43691 -13.21536 -13.00185 -12.98095 -12.71370 -12.67171 -12.30782 -12.21882 -11.94814 -11.73166 -11.49625 -11.06316 -10.94543 -10.80937 -10.61825 -10.34584 -9.82691 -8.29799 -6.46850 1.42784 1.45456 1.56731 1.77067 2.32333 2.59693 2.94806 3.05032 3.64008 3.74506 3.88411 4.00543 4.11723 4.19604 4.26015 4.41085 4.46381 4.57441 4.86103 4.87341 4.93738 4.99741 5.03151 5.10517 5.12922 5.16855 5.22152 5.24760 5.31311 5.35564 5.46870 5.49889 5.51697 5.69752 5.84250 6.64364 6.91283 7.22749 7.49947 8.82624 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048236 B = 0.004678 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.342399 B = 5983.389496 C = 6344.043261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.265 3.735 10 N -0.706 5.706 11 C 0.495 3.505 12 O -0.607 6.607 13 C -0.092 4.092 14 C -0.092 4.092 15 C -0.072 4.072 16 C -0.134 4.134 17 C -0.186 4.186 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.104 4.104 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.015 1.015 24 H 0.408 0.592 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.895 -16.339 1.917 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.489 6.489 13 C -0.113 4.113 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.134 4.134 17 C -0.223 4.223 18 C -0.197 4.197 19 C -0.108 4.108 20 C -0.142 4.142 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.243 0.757 25 H 0.135 0.865 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.904 -16.359 1.922 20.924 hybrid contribution -0.261 1.136 0.055 1.166 sum 12.643 -15.223 1.977 19.887 Atomic orbital electron populations 1.70143 1.08363 1.28588 1.50001 1.26092 0.95765 1.03985 0.93783 0.85138 0.78502 0.76828 0.78638 1.19542 1.20966 1.17800 1.21618 0.94307 0.90525 1.52906 0.89752 1.18538 0.88798 0.84598 0.93882 1.46226 1.11066 1.05600 1.72649 1.21663 0.89830 0.85172 0.75073 1.90614 1.19771 1.85680 1.52845 1.21316 0.95875 0.91791 1.02290 1.21254 0.97376 0.92805 1.01590 1.21117 0.95163 0.97079 0.97575 1.21546 1.01434 0.93827 0.96620 1.23072 1.00201 1.04316 0.94706 1.23036 0.96933 0.96936 1.02777 1.21113 0.95968 0.90500 1.03255 1.21493 0.97014 1.00317 0.95364 0.92243 0.99664 0.99733 0.75655 0.86547 0.92793 0.93416 0.90121 0.90969 0.89310 0.88895 0.87826 0.88168 0.90386 0.89750 0.90580 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.51 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -30.63 9.28 25.60 0.24 -30.40 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.26 14.92 5.43 85.63 0.46 15.39 16 10 N -0.71 -30.73 5.42 -466.80 -2.53 -33.26 16 11 C 0.49 20.61 7.15 87.66 0.63 21.24 16 12 O -0.61 -31.46 15.95 -3.03 -0.05 -31.51 16 13 C -0.09 -2.59 2.44 -11.58 -0.03 -2.61 16 14 C -0.09 -2.52 4.52 30.64 0.14 -2.38 16 15 C -0.07 -1.38 5.67 30.70 0.17 -1.21 16 16 C -0.13 -2.35 1.97 -52.20 -0.10 -2.45 16 17 C -0.19 -3.19 9.93 30.55 0.30 -2.89 16 18 C -0.16 -2.23 9.99 30.54 0.31 -1.93 16 19 C -0.07 -1.22 5.67 30.70 0.17 -1.05 16 20 C -0.10 -2.44 5.13 30.63 0.16 -2.29 16 21 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.01 -0.93 8.14 -2.39 -0.02 -0.94 16 23 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 24 H 0.41 14.62 7.67 -92.71 -0.71 13.91 16 25 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 26 H 0.05 1.62 8.01 -2.39 -0.02 1.60 16 27 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.70 7.45 -2.38 -0.02 1.68 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.31 302.94 2.97 -68.34 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.33 Total: 18.53 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 2.91 Total: -9.93 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -2.24 Total: -89.97 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.05 Total: -31.51 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.31 2.97 -68.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695662898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.900 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds