Wall clock time and date at job start Thu Apr 9 2020 12:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47554 * 2 1 4 4 C 1.37099 * 119.99699 * 277.20234 * 3 2 1 5 5 H 1.07999 * 120.00296 * 140.58369 * 4 3 2 6 6 C 1.38947 * 120.00323 * 320.58806 * 4 3 2 7 7 N 1.31412 * 120.00477 * 161.00663 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 341.28536 * 6 4 3 9 9 H 1.48502 * 109.47526 * 95.58895 * 8 6 4 10 10 H 1.48498 * 109.47491 * 215.59077 * 8 6 4 11 11 H 1.48506 * 109.47270 * 335.59009 * 8 6 4 12 12 C 1.34772 * 120.00588 * 97.19862 * 3 2 1 13 13 O 1.21286 * 120.00267 * 176.03003 * 12 3 2 14 14 C 1.50702 * 119.99697 * 356.03109 * 12 3 2 15 15 C 1.55930 * 115.91978 * 305.60051 * 14 12 3 16 16 C 1.54583 * 104.63965 * 199.96793 * 15 14 12 17 17 C 1.55919 * 104.64917 * 0.02562 * 16 15 14 18 18 C 1.55930 * 105.23187 * 289.53318 * 17 16 15 19 19 C 1.55925 * 115.92183 * 69.72666 * 14 12 3 20 20 C 1.56953 * 116.22599 * 187.66440 * 14 12 3 21 21 H 1.09006 * 109.46622 * 67.75410 * 1 2 3 22 22 H 1.08994 * 109.47727 * 187.75524 * 1 2 3 23 23 H 1.08998 * 109.47168 * 307.76490 * 1 2 3 24 24 H 1.08998 * 109.47236 * 239.99609 * 2 1 3 25 25 H 1.09002 * 109.46545 * 119.99882 * 2 1 3 26 26 H 0.97002 * 120.00311 * 180.02562 * 7 6 4 27 27 H 1.08988 * 110.40411 * 318.75558 * 15 14 12 28 28 H 1.09001 * 110.40033 * 81.18426 * 15 14 12 29 29 H 1.08998 * 110.40252 * 241.20592 * 16 15 14 30 30 H 1.08996 * 110.50009 * 118.84772 * 16 15 14 31 31 H 1.08996 * 115.92910 * 160.02863 * 17 16 15 32 32 H 1.09000 * 110.40298 * 189.25998 * 18 17 16 33 33 H 1.09002 * 110.39817 * 311.55647 * 18 17 16 34 34 H 1.09000 * 110.40644 * 278.82036 * 19 14 12 35 35 H 1.08997 * 110.40166 * 41.23876 * 19 14 12 36 36 H 1.09004 * 112.02527 * 296.35586 * 20 14 12 37 37 H 1.09000 * 112.02624 * 62.87009 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1066 2.0770 -1.1780 5 1 1.8372 3.1224 -1.2092 6 6 2.5425 1.4373 -2.3319 7 7 2.2842 1.9590 -3.5100 8 14 3.4890 -0.1685 -2.2088 9 1 2.5519 -1.3091 -2.3707 10 1 4.5193 -0.2189 -3.2769 11 1 4.1481 -0.2541 -0.8808 12 6 2.3810 1.9678 1.1579 13 8 2.8528 3.0851 1.1500 14 6 2.2002 1.2354 2.4625 15 6 0.7624 0.7072 2.7541 16 6 0.7297 0.4873 4.2838 17 6 2.1504 0.9040 4.7726 18 6 3.1075 -0.2087 4.2460 19 6 3.1405 0.0133 2.6941 20 6 2.4749 2.0640 3.7669 21 1 -0.3633 0.3891 -0.9513 22 1 -0.3634 -1.0182 0.1387 23 1 -0.3633 0.6294 0.8124 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5882 1.5123 -4.3155 27 1 0.0187 1.4480 2.4607 28 1 0.5900 -0.2336 2.2312 29 1 0.5410 -0.5614 4.5130 30 1 -0.0304 1.1186 4.7440 31 1 2.2382 1.1459 5.8317 32 1 4.1017 -0.0899 4.6767 33 1 2.7082 -1.1955 4.4804 34 1 2.7558 -0.8656 2.1766 35 1 4.1512 0.2421 2.3564 36 1 3.5141 2.3860 3.8355 37 1 1.7848 2.9011 3.8724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335660607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:23 Heat of formation + Delta-G solvation = -38.404104 kcal Electronic energy + Delta-G solvation = -18327.579645 eV Core-core repulsion = 15683.430449 eV Total energy + Delta-G solvation = -2644.149196 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84721 -39.43413 -37.15108 -34.38451 -31.74066 -31.16671 -30.63776 -28.52645 -26.95888 -24.62919 -22.97535 -22.55109 -20.28321 -19.76716 -18.87221 -17.78629 -17.59951 -16.41852 -16.21366 -15.86030 -15.47417 -14.85787 -14.71302 -14.30018 -13.80834 -13.61944 -13.53864 -13.32677 -13.04006 -12.79108 -12.57160 -12.45330 -12.16417 -11.94144 -11.90805 -11.76377 -11.61359 -11.50677 -11.13766 -10.96682 -10.81395 -10.30733 -9.72520 -8.53847 -6.19260 1.13335 1.26381 1.38348 1.88171 2.13861 2.68160 2.91313 3.44898 3.55245 3.65124 3.96371 4.06666 4.22964 4.29894 4.33442 4.41546 4.46006 4.56721 4.61391 4.65532 4.70406 4.85432 4.92675 4.96892 5.08265 5.10018 5.16985 5.24031 5.29672 5.38447 5.42398 5.44613 5.50579 5.57103 5.99633 6.57158 6.91972 7.28473 7.87221 8.63747 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033956 B = 0.009196 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.388748 B = 3044.168153 C = 3100.060076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 N -0.472 5.472 4 C -0.329 4.329 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.237 1.237 10 H -0.289 1.289 11 H -0.261 1.261 12 C 0.482 3.518 13 O -0.622 6.622 14 C -0.106 4.106 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.090 4.090 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.104 4.104 21 H 0.034 0.966 22 H 0.098 0.902 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.109 0.891 26 H 0.280 0.720 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -12.674 16.473 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.048 4.048 3 N -0.193 5.193 4 C -0.457 4.457 5 H 0.057 0.943 6 C -0.190 4.190 7 N -0.552 5.552 8 Si 0.774 3.226 9 H -0.162 1.162 10 H -0.216 1.216 11 H -0.185 1.185 12 C 0.272 3.728 13 O -0.507 6.507 14 C -0.109 4.109 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.108 4.108 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.142 4.142 21 H 0.054 0.946 22 H 0.117 0.883 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.127 0.873 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.540 -12.149 16.224 20.427 hybrid contribution 0.574 0.540 -1.250 1.478 sum -1.966 -11.609 14.974 19.049 Atomic orbital electron populations 1.22301 0.94209 1.03498 1.02153 1.22327 0.96796 0.83317 1.02377 1.43857 1.57014 1.13072 1.05388 1.18617 1.45483 0.95645 0.85951 0.94332 1.26164 0.96192 1.02755 0.93909 1.69846 1.43954 1.42885 0.98478 0.85789 0.79112 0.79285 0.78438 1.16212 1.21599 1.18475 1.20749 0.79105 0.86940 0.85984 1.90494 1.49143 1.23127 1.87981 1.22852 0.99702 0.97253 0.91082 1.22978 0.92535 1.01065 0.98522 1.22626 0.96511 1.02860 0.92717 1.23601 0.95317 0.93359 0.98537 1.22966 1.00111 0.99579 0.91634 1.23135 0.97613 0.95511 0.98990 1.23373 1.00326 0.97443 0.93027 0.94631 0.88309 0.91218 0.93236 0.87292 0.91082 0.93224 0.89003 0.88704 0.91012 0.85716 0.90938 0.88594 0.89714 0.93718 0.92737 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 8.89 71.98 0.64 -4.78 16 2 C 0.07 2.85 4.57 86.38 0.39 3.25 16 3 N -0.47 -23.97 2.17 -635.56 -1.38 -25.35 16 4 C -0.33 -20.22 9.28 84.04 0.78 -19.44 16 5 H 0.04 2.78 7.98 -2.91 -0.02 2.76 16 6 C 0.01 0.67 5.37 84.93 0.46 1.13 16 7 N -0.91 -56.21 13.96 21.66 0.30 -55.90 16 8 Si 0.95 43.65 24.86 68.60 1.71 45.36 16 9 H -0.24 -9.45 6.76 99.48 0.67 -8.78 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 C 0.48 24.04 7.05 87.66 0.62 24.66 16 13 O -0.62 -37.57 16.45 -3.05 -0.05 -37.62 16 14 C -0.11 -3.67 0.85 -49.51 -0.04 -3.71 16 15 C -0.11 -3.02 3.72 32.15 0.12 -2.90 16 16 C -0.11 -2.03 6.22 32.14 0.20 -1.83 16 17 C -0.09 -1.78 5.14 -7.39 -0.04 -1.81 16 18 C -0.11 -2.00 6.33 32.94 0.21 -1.80 16 19 C -0.11 -3.21 5.42 32.94 0.18 -3.03 16 20 C -0.10 -3.22 5.64 33.35 0.19 -3.03 16 21 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.07 2.22 5.21 -2.39 -0.01 2.20 16 24 H 0.05 2.02 2.95 -2.39 -0.01 2.02 16 25 H 0.11 3.44 3.07 -2.39 -0.01 3.43 16 26 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.05 1.49 7.21 -2.39 -0.02 1.48 16 28 H 0.09 2.12 4.93 -2.39 -0.01 2.11 16 29 H 0.09 1.26 7.88 -2.39 -0.02 1.24 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 34 H 0.08 2.06 5.81 -2.39 -0.01 2.05 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -77.86 273.27 5.31 -72.55 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.03 Total: 14.26 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 3.70 Total: -13.29 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.08 Total: -81.25 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.05 Total: -37.62 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.71 Total: 45.36 kcal Total: -77.86 5.31 -72.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335660607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.143 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds