Wall clock time and date at job start Thu Apr 9 2020 12:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47104 * 2 1 4 4 C 1.46503 * 119.99528 * 274.63637 * 3 2 1 5 5 C 1.50699 * 109.47280 * 278.51020 * 4 3 2 6 6 H 1.08004 * 119.99361 * 0.02562 * 5 4 3 7 7 C 1.37865 * 120.00089 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00326 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47325 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47317 * 120.00139 * 9 7 5 12 12 H 1.48509 * 109.47092 * 240.00243 * 9 7 5 13 13 C 1.34770 * 119.99920 * 94.63349 * 3 2 1 14 14 O 1.21283 * 120.00571 * 4.73186 * 13 3 2 15 15 C 1.50703 * 120.00077 * 184.72918 * 13 3 2 16 16 C 1.52997 * 110.34274 * 63.68341 * 15 13 3 17 17 C 1.51110 * 110.52499 * 301.42479 * 15 13 3 18 18 C 1.30520 * 111.10170 * 225.01806 * 17 15 13 19 19 C 1.51098 * 111.10954 * 359.61136 * 18 17 15 20 20 C 1.54627 * 110.38968 * 185.97191 * 15 13 3 21 21 H 1.09000 * 109.47442 * 304.99386 * 1 2 3 22 22 H 1.09005 * 109.47120 * 64.99768 * 1 2 3 23 23 H 1.09006 * 109.47125 * 184.99467 * 1 2 3 24 24 H 1.09002 * 109.47123 * 239.99993 * 2 1 3 25 25 H 1.09002 * 109.46903 * 119.99919 * 2 1 3 26 26 H 1.08998 * 109.47264 * 38.51659 * 4 3 2 27 27 H 1.09005 * 109.46408 * 158.51365 * 4 3 2 28 28 H 0.96998 * 120.00219 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.47050 * 193.11228 * 16 15 13 30 30 H 1.09000 * 109.47332 * 313.10456 * 16 15 13 31 31 H 1.08995 * 109.47006 * 73.11264 * 16 15 13 32 32 H 1.08003 * 124.44426 * 44.89619 * 17 15 13 33 33 H 1.08004 * 124.44394 * 179.88117 * 18 17 15 34 34 H 1.08996 * 110.38895 * 135.48965 * 19 18 17 35 35 H 1.08993 * 110.38949 * 257.76288 * 19 18 17 36 36 H 1.09003 * 111.03667 * 25.41257 * 20 15 13 37 37 H 1.08995 * 111.07326 * 261.49106 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1658 2.1059 -1.2647 5 6 3.4681 1.7188 -1.9167 6 1 4.1205 1.0040 -1.4371 7 6 3.8267 2.2769 -3.1252 8 7 3.0325 3.1477 -3.7089 9 14 5.4406 1.7965 -3.9337 10 1 6.1466 0.8071 -3.0805 11 1 5.1684 1.1976 -5.2651 12 1 6.2905 3.0032 -4.0981 13 6 2.3319 1.9851 1.1633 14 8 2.2921 1.3594 2.2015 15 6 2.7320 3.4380 1.1743 16 6 1.5690 4.3135 0.7033 17 6 3.9435 3.6605 0.2989 18 6 4.8204 4.4216 0.8950 19 6 4.3361 4.8413 2.2633 20 6 3.1856 3.8612 2.5907 21 1 -0.3634 0.5893 0.8419 22 1 -0.3633 0.4344 -0.9314 23 1 -0.3634 -1.0238 0.0895 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3382 1.8526 -1.9272 27 1 2.1611 3.1787 -1.0712 28 1 3.2850 3.5407 -4.5590 29 1 1.9332 5.3193 0.4934 30 1 1.1369 3.8874 -0.2022 31 1 0.8086 4.3577 1.4829 32 1 4.0681 3.2429 -0.6892 33 1 5.7662 4.7164 0.4647 34 1 5.1373 4.7445 2.9959 35 1 3.9678 5.8668 2.2377 36 1 3.5507 3.0044 3.1569 37 1 2.3813 4.3666 3.1251 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:08 Heat of formation + Delta-G solvation = -18.929285 kcal Electronic energy + Delta-G solvation = -18015.766002 eV Core-core repulsion = 15372.461298 eV Total energy + Delta-G solvation = -2643.304704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06601 -37.19402 -35.28563 -32.85501 -31.37448 -29.72515 -28.21185 -27.12895 -25.02342 -23.17123 -22.80121 -20.14929 -18.79776 -17.84661 -16.58441 -15.93840 -15.48001 -14.93712 -14.58770 -14.26817 -13.70868 -13.14321 -12.80459 -12.59069 -12.22523 -12.20515 -11.91000 -11.67770 -11.48486 -11.19601 -11.08291 -10.93009 -10.79663 -10.74854 -10.54139 -10.40882 -10.13972 -9.95507 -9.57674 -8.97426 -8.56417 -8.22906 -7.66936 -6.24412 -4.30225 2.91131 3.18068 3.27497 3.31728 3.52980 4.00849 4.29538 5.01931 5.08074 5.13971 5.40294 5.55506 5.71776 5.81423 5.85410 5.87458 5.92493 6.01283 6.11872 6.24082 6.29618 6.32957 6.41719 6.47664 6.53957 6.67951 6.72698 6.81679 6.86222 7.21157 7.42487 7.58694 7.64111 7.73357 8.03734 8.40903 8.76341 9.06815 9.35171 10.80855 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.011438 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.323481 B = 2447.454218 C = 3357.115250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.592 5.592 4 C 0.217 3.783 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.528 3.472 14 O -0.576 6.576 15 C -0.056 4.056 16 C -0.139 4.139 17 C -0.141 4.141 18 C -0.201 4.201 19 C -0.096 4.096 20 C -0.105 4.105 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.266 0.734 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.182 0.818 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 1.755 5.813 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.098 3.902 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.316 3.684 14 O -0.457 6.457 15 C -0.059 4.059 16 C -0.196 4.196 17 C -0.158 4.158 18 C -0.219 4.219 19 C -0.133 4.133 20 C -0.143 4.143 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.199 0.801 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.497 1.538 6.156 6.519 hybrid contribution 0.900 -0.180 -0.773 1.200 sum -0.596 1.357 5.383 5.584 Atomic orbital electron populations 1.22103 0.96977 1.01106 1.01824 1.21231 0.93264 0.84192 1.02504 1.48157 1.62625 1.13384 1.08015 1.19933 0.96987 0.93957 0.79368 1.21504 1.04784 1.25952 1.05130 0.91847 1.24953 0.97361 0.94815 0.96638 1.69929 1.36674 1.28171 1.17445 0.86519 0.83410 0.78697 0.79447 1.19523 1.20773 1.20683 1.20324 0.76026 0.88797 0.83207 1.90547 1.55775 1.66633 1.32768 1.20561 0.96556 0.92631 0.96129 1.21989 0.96138 0.99497 1.01951 1.24630 0.92109 0.96805 1.02281 1.23142 0.99850 1.02110 0.96763 1.21329 0.97416 0.98761 0.95760 1.22456 0.97647 0.99187 0.94990 0.93075 0.92529 0.92508 0.90548 0.91020 0.95161 0.91786 0.92427 0.91811 0.90205 0.92877 0.80138 0.86275 0.92034 0.91571 0.90009 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.11 2.13 6.21 -4.04 -0.03 2.11 16 3 N -0.59 -12.70 2.46 -175.05 -0.43 -13.13 16 4 C 0.22 5.03 4.00 -5.19 -0.02 5.01 16 5 C -0.54 -13.42 6.71 -34.44 -0.23 -13.65 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.07 1.68 5.38 -17.82 -0.10 1.59 16 8 N -0.88 -23.38 13.29 55.43 0.74 -22.64 16 9 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.53 11.47 6.53 -10.99 -0.07 11.40 16 14 O -0.58 -13.52 15.03 5.56 0.08 -13.44 16 15 C -0.06 -1.07 0.56 -155.76 -0.09 -1.16 16 16 C -0.14 -2.41 8.13 37.16 0.30 -2.11 16 17 C -0.14 -2.87 7.97 -35.69 -0.28 -3.15 16 18 C -0.20 -3.57 10.77 -35.70 -0.38 -3.95 16 19 C -0.10 -1.47 6.81 -26.82 -0.18 -1.66 16 20 C -0.10 -1.80 5.96 -25.01 -0.15 -1.95 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 25 H 0.07 1.39 7.23 -51.93 -0.38 1.02 16 26 H 0.03 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.06 1.49 3.28 -51.93 -0.17 1.32 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 30 H 0.08 1.50 5.37 -51.93 -0.28 1.22 16 31 H 0.05 0.83 7.96 -51.93 -0.41 0.41 16 32 H 0.18 4.21 3.90 -52.48 -0.20 4.00 16 33 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.52 7.09 -51.93 -0.37 1.15 16 37 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -27.38 292.70 -6.63 -34.01 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.56 Total: 5.59 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.85 Total: -9.80 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.31 Total: -35.77 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.38 -6.63 -34.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.084 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds