Wall clock time and date at job start Thu Apr 9 2020 12:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47410 * 2 1 4 4 C 1.46500 * 120.00320 * 265.05172 * 3 2 1 5 5 C 1.50698 * 109.46872 * 277.07186 * 4 3 2 6 6 H 1.08001 * 120.00406 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00101 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00150 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99542 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46974 * 90.00770 * 9 7 5 11 11 H 1.48501 * 109.46761 * 210.00559 * 9 7 5 12 12 H 1.48500 * 109.47091 * 330.00498 * 9 7 5 13 13 C 1.34776 * 119.99576 * 85.04810 * 3 2 1 14 14 O 1.21278 * 120.00651 * 6.18835 * 13 3 2 15 15 C 1.50704 * 120.00018 * 186.18602 * 13 3 2 16 16 C 1.53007 * 110.34510 * 297.26555 * 15 13 3 17 17 C 1.51102 * 110.48360 * 59.61156 * 15 13 3 18 18 C 1.30529 * 111.10416 * 102.42255 * 17 15 13 19 19 C 1.51110 * 111.10098 * 0.02562 * 18 17 15 20 20 C 1.54627 * 110.38978 * 174.97382 * 15 13 3 21 21 H 1.08996 * 109.46648 * 64.98775 * 1 2 3 22 22 H 1.08991 * 109.47185 * 184.98531 * 1 2 3 23 23 H 1.08995 * 109.46789 * 304.98951 * 1 2 3 24 24 H 1.09008 * 109.47530 * 240.00097 * 2 1 3 25 25 H 1.09002 * 109.47480 * 119.99930 * 2 1 3 26 26 H 1.09000 * 109.46760 * 37.06542 * 4 3 2 27 27 H 1.08997 * 109.47384 * 157.07006 * 4 3 2 28 28 H 0.97006 * 120.00006 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46621 * 295.98809 * 16 15 13 30 30 H 1.08998 * 109.46845 * 55.98536 * 16 15 13 31 31 H 1.09000 * 109.47133 * 175.98649 * 16 15 13 32 32 H 1.08004 * 124.45043 * 282.40980 * 17 15 13 33 33 H 1.07994 * 124.45330 * 180.02562 * 18 17 15 34 34 H 1.08993 * 110.38354 * 257.62129 * 19 18 17 35 35 H 1.08997 * 110.38546 * 135.24411 * 19 18 17 36 36 H 1.08999 * 111.03958 * 23.74412 * 20 15 13 37 37 H 1.09008 * 111.03465 * 147.67393 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3658 2.0354 -1.2640 5 6 3.7659 1.6460 -1.6628 6 1 4.3398 0.9784 -1.0372 7 6 4.3148 2.1429 -2.8260 8 7 5.5368 1.8035 -3.1738 9 14 3.3225 3.2982 -3.9078 10 1 3.5657 4.7014 -3.4870 11 1 3.7356 3.1273 -5.3239 12 1 1.8774 2.9842 -3.7723 13 6 2.1480 2.0500 1.1629 14 8 1.9688 1.4759 2.2160 15 6 2.5159 3.5115 1.1547 16 6 3.9014 3.7079 0.5359 17 6 1.4827 4.3125 0.3969 18 6 0.6828 4.9411 1.2147 19 6 1.0496 4.6645 2.6543 20 6 2.4812 4.0838 2.5907 21 1 -0.3632 0.4345 -0.9313 22 1 -0.3633 -1.0237 0.0893 23 1 -0.3633 0.5893 0.8419 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6667 1.7220 -2.0393 27 1 2.3107 3.1169 -1.1405 28 1 5.9228 2.1528 -3.9923 29 1 4.6500 3.2178 1.1584 30 1 3.9181 3.2724 -0.4632 31 1 4.1230 4.7732 0.4717 32 1 1.4151 4.3590 -0.6801 33 1 -0.1338 5.5755 0.9034 34 1 0.3639 3.9364 3.0875 35 1 1.0394 5.5882 3.2328 36 1 2.6166 3.2944 3.3299 37 1 3.2273 4.8684 2.7173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:10 Heat of formation + Delta-G solvation = -11.728375 kcal Electronic energy + Delta-G solvation = -18081.905844 eV Core-core repulsion = 15438.913394 eV Total energy + Delta-G solvation = -2642.992449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25357 -37.23543 -35.38813 -32.87458 -31.55622 -29.87284 -28.55009 -27.77134 -24.38703 -23.20066 -22.66570 -20.48093 -19.11014 -17.94797 -17.01935 -16.09902 -15.75714 -14.86120 -14.46342 -14.42687 -13.75426 -13.15629 -12.97443 -12.83667 -12.58365 -12.08070 -11.81764 -11.71142 -11.53290 -11.52243 -11.22660 -11.01699 -10.82913 -10.70954 -10.53458 -10.40119 -10.27326 -9.88440 -9.57678 -9.30930 -8.74839 -8.42108 -7.71077 -6.26121 -4.24933 2.46867 3.13823 3.21824 3.23749 3.40829 3.90593 4.22159 4.90665 4.97551 5.03425 5.23445 5.49143 5.52863 5.69363 5.74457 5.80903 5.84986 5.95006 6.05355 6.13796 6.24542 6.31413 6.40271 6.43633 6.49343 6.57697 6.61921 6.63026 6.70442 6.81961 7.13307 7.31000 7.41679 7.47718 8.13819 8.43030 8.80276 8.96542 9.32369 10.85978 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.010645 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.886260 B = 2629.595297 C = 3131.373921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.587 5.587 4 C 0.191 3.809 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.886 5.886 9 Si 0.863 3.137 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.536 3.464 14 O -0.569 6.569 15 C -0.053 4.053 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.171 4.171 19 C -0.098 4.098 20 C -0.109 4.109 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.049 0.951 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 4.680 5.141 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.316 5.316 4 C 0.070 3.930 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.523 5.523 9 Si 0.689 3.311 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.324 3.676 14 O -0.449 6.449 15 C -0.056 4.056 16 C -0.229 4.229 17 C -0.163 4.163 18 C -0.189 4.189 19 C -0.135 4.135 20 C -0.147 4.147 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.461 4.378 5.515 11.008 hybrid contribution -0.366 0.625 -0.925 1.175 sum -8.827 5.003 4.590 11.136 Atomic orbital electron populations 1.22115 0.97003 1.01310 1.01674 1.21246 0.93068 0.83679 1.02856 1.47815 1.63082 1.13191 1.07510 1.20270 0.96734 0.94610 0.81359 1.21322 0.97643 1.30472 1.07913 0.90181 1.24875 0.94736 0.96075 0.96998 1.69884 1.14176 1.43914 1.24353 0.87035 0.81263 0.82034 0.80729 1.19482 1.20758 1.18730 1.20165 0.75858 0.88294 0.83278 1.90551 1.53226 1.69879 1.31272 1.20514 0.97194 0.91902 0.96013 1.22530 0.92286 1.01486 1.06566 1.23328 0.96391 0.97241 0.99340 1.23302 0.99664 1.00399 0.95566 1.21338 0.97147 1.00243 0.94751 1.22477 0.96202 1.00286 0.95700 0.92878 0.92305 0.92865 0.90040 0.91118 0.95436 0.93220 0.92265 0.92941 0.85403 0.93180 0.85085 0.85966 0.90872 0.91556 0.89434 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.20 37.16 0.38 -2.20 16 2 C 0.11 2.16 6.14 -4.04 -0.02 2.13 16 3 N -0.59 -12.32 2.47 -175.06 -0.43 -12.75 16 4 C 0.19 4.20 3.46 -5.19 -0.02 4.18 16 5 C -0.54 -13.72 7.52 -34.44 -0.26 -13.98 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.08 2.03 5.43 -17.82 -0.10 1.93 16 8 N -0.89 -25.13 13.96 55.43 0.77 -24.36 16 9 Si 0.86 19.24 27.47 -169.99 -4.67 14.57 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 13 C 0.54 11.34 6.49 -10.98 -0.07 11.27 16 14 O -0.57 -13.00 15.07 5.56 0.08 -12.92 16 15 C -0.05 -0.99 0.56 -155.75 -0.09 -1.08 16 16 C -0.17 -3.39 8.12 37.16 0.30 -3.09 16 17 C -0.15 -2.45 8.14 -35.70 -0.29 -2.74 16 18 C -0.17 -2.51 10.78 -35.69 -0.38 -2.89 16 19 C -0.10 -1.40 6.81 -26.83 -0.18 -1.59 16 20 C -0.11 -1.78 6.07 -25.03 -0.15 -1.93 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 1.52 8.03 -51.92 -0.42 1.10 16 25 H 0.07 1.36 7.50 -51.93 -0.39 0.97 16 26 H 0.03 0.60 7.18 -51.93 -0.37 0.23 16 27 H 0.05 1.05 2.33 -51.93 -0.12 0.93 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.13 2.87 3.00 -51.93 -0.16 2.71 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.13 2.20 6.34 -52.48 -0.33 1.87 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.54 6.88 -51.93 -0.36 1.18 16 37 H 0.07 1.06 7.91 -51.92 -0.41 0.65 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -28.65 290.02 -6.29 -34.93 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.53 Total: 6.13 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.89 Total: -9.99 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.34 Total: -37.10 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.65 -6.29 -34.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.205 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds