Wall clock time and date at job start Thu Apr 9 2020 12:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00449 * 2 1 4 4 C 1.53007 * 109.47041 * 293.95763 * 3 2 1 5 5 C 1.52998 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47079 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99914 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00537 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99828 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00437 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46879 * 90.00253 * 10 8 6 12 12 H 1.48503 * 109.47018 * 210.00014 * 10 8 6 13 13 H 1.48491 * 109.47445 * 330.00201 * 10 8 6 14 14 C 1.46904 * 111.00005 * 123.95374 * 2 1 3 15 15 C 1.50700 * 109.47168 * 66.04867 * 14 2 1 16 16 N 1.30502 * 125.64425 * 270.27392 * 15 14 2 17 17 C 1.34127 * 109.25683 * 180.14781 * 16 15 14 18 18 C 1.34672 * 108.01948 * 359.61488 * 17 16 15 19 19 N 1.35041 * 125.65474 * 89.99517 * 15 14 2 20 20 C 1.46499 * 126.39624 * 0.02562 * 19 15 14 21 21 H 1.09002 * 109.46767 * 296.04371 * 1 2 3 22 22 H 1.08995 * 109.46791 * 56.04528 * 1 2 3 23 23 H 1.08996 * 109.47215 * 176.04890 * 1 2 3 24 24 H 1.09005 * 109.47278 * 53.95384 * 3 2 1 25 25 H 1.08998 * 109.47628 * 173.95310 * 3 2 1 26 26 H 1.09007 * 109.46933 * 299.99401 * 4 3 2 27 27 H 1.08998 * 109.47279 * 59.99334 * 4 3 2 28 28 H 1.08996 * 109.47371 * 299.99951 * 5 4 3 29 29 H 1.09003 * 109.47037 * 59.99960 * 5 4 3 30 30 H 0.96996 * 120.00652 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.46963 * 306.04497 * 14 2 1 32 32 H 1.09006 * 109.46688 * 186.04292 * 14 2 1 33 33 H 1.08002 * 125.99481 * 179.88589 * 17 16 15 34 34 H 1.07997 * 126.59503 * 180.24939 * 18 17 16 35 35 H 1.09003 * 109.47221 * 270.01947 * 20 19 15 36 36 H 1.09003 * 109.47097 * 30.02049 * 20 19 15 37 37 H 1.09001 * 109.46668 * 150.02021 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1793 3.4860 -1.3180 6 6 1.8213 4.1615 -2.6167 7 1 1.2589 3.6256 -3.3670 8 6 2.2108 5.4639 -2.8467 9 7 2.8953 6.1166 -1.9328 10 14 1.7664 6.3014 -4.4561 11 1 0.4536 6.9811 -4.3144 12 1 2.8083 7.3033 -4.7970 13 1 1.6839 5.2859 -5.5364 14 6 1.9954 -0.7660 1.1376 15 6 1.6370 -2.2204 0.9729 16 7 0.5489 -2.7902 1.4139 17 6 0.5680 -4.0914 1.0890 18 6 1.7074 -4.3355 0.4138 19 7 2.3859 -3.1489 0.3399 20 6 3.6825 -2.9276 -0.3051 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0708 24 1 1.5612 1.9273 0.8309 25 1 3.0798 1.3443 0.1083 26 1 2.0658 1.5015 -2.1492 27 1 0.5472 2.0844 -1.4265 28 1 1.7447 4.0416 -0.4872 29 1 3.2636 3.4592 -1.2096 30 1 3.1690 7.0330 -2.0943 31 1 1.5611 -0.3872 2.0628 32 1 3.0798 -0.6611 1.1756 33 1 -0.1982 -4.8155 1.3235 34 1 2.0247 -5.2848 0.0083 35 1 3.5273 -2.6544 -1.3488 36 1 4.2102 -2.1227 0.2066 37 1 4.2748 -3.8412 -0.2528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059382828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:34 Heat of formation + Delta-G solvation = 57.135509 kcal Electronic energy + Delta-G solvation = -16493.136628 eV Core-core repulsion = 13885.423092 eV Total energy + Delta-G solvation = -2607.713536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.09297 -37.47618 -34.03811 -33.73352 -31.70594 -29.99054 -27.38131 -27.03655 -26.55608 -24.06369 -21.63433 -21.38752 -19.88249 -19.58990 -17.07063 -16.36819 -15.98971 -15.31192 -14.87874 -14.53939 -14.28037 -14.20287 -13.59419 -13.38414 -12.89486 -12.85244 -12.45019 -12.27357 -11.79941 -11.60565 -11.40126 -11.17296 -10.81154 -10.53351 -10.50266 -9.97999 -9.60918 -9.60442 -9.34526 -9.05864 -8.47750 -8.32884 -8.08323 -5.98397 -4.00311 1.98575 2.75590 3.09026 3.33284 3.39350 3.43140 4.19912 4.47947 4.57504 4.61233 4.72572 4.97535 5.15006 5.31220 5.37466 5.38203 5.49857 5.56027 5.72150 5.76429 5.94253 6.02803 6.24111 6.27745 6.34765 6.69813 6.73130 6.76266 7.10494 7.10748 7.29025 7.38483 7.69961 7.84740 8.02157 8.10488 8.45647 9.06896 9.63691 11.13083 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048354 B = 0.004029 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.925974 B = 6947.954973 C = 7030.274514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.134 3.866 15 C 0.224 3.776 16 N -0.491 5.491 17 C -0.031 4.031 18 C -0.064 4.064 19 N -0.450 5.450 20 C 0.074 3.926 21 H 0.025 0.975 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -19.127 5.444 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.005 3.995 15 C -0.039 4.039 16 N -0.211 5.211 17 C -0.180 4.180 18 C -0.198 4.198 19 N -0.132 5.132 20 C -0.069 4.069 21 H 0.044 0.956 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.189 0.811 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.633 -18.765 5.404 19.538 hybrid contribution 0.189 0.373 -0.647 0.770 sum 0.822 -18.392 4.758 19.015 Atomic orbital electron populations 1.22414 0.86829 1.02214 1.00793 1.62073 1.08851 1.15095 1.40466 1.22334 0.99397 0.85762 0.99572 1.21656 1.00257 0.98106 0.94175 1.19077 0.96198 0.89291 0.97021 1.21251 1.34718 0.97598 1.02068 0.92702 1.25021 0.95226 0.97504 0.96735 1.69963 1.38429 1.11227 1.34025 0.86603 0.78093 0.79334 0.84031 1.20686 1.21254 1.19875 1.20374 1.00214 0.84697 0.94235 1.23109 0.89289 0.93411 0.98106 1.70257 1.19599 1.07194 1.24001 1.22257 0.98428 0.93637 1.03635 1.22655 0.96842 0.90782 1.09482 1.45246 1.17868 1.08585 1.41474 1.22047 0.82167 1.03399 0.99279 0.95590 0.90852 0.91391 0.94903 0.91257 0.92712 0.93274 0.96748 0.96626 0.93051 0.91796 0.89572 0.81577 0.81139 0.89920 0.89393 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.17 60.06 0.55 0.95 16 2 N -0.54 -8.37 4.75 -244.37 -1.16 -9.53 16 3 C 0.06 0.96 4.96 -3.82 -0.02 0.95 16 4 C -0.10 -2.16 5.08 -26.73 -0.14 -2.30 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.13 1.80 5.27 -4.97 -0.03 1.77 16 15 C 0.22 3.09 6.54 -155.42 -1.02 2.08 16 16 N -0.49 -7.37 10.49 -10.81 -0.11 -7.48 16 17 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 18 C -0.06 -0.68 11.58 -16.56 -0.19 -0.87 16 19 N -0.45 -5.17 3.15 -121.27 -0.38 -5.56 16 20 C 0.07 0.59 10.97 59.85 0.66 1.25 16 21 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.07 1.18 6.30 -51.93 -0.33 0.86 16 23 H 0.07 1.08 6.71 -51.93 -0.35 0.74 16 24 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 25 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 1.02 6.47 -51.93 -0.34 0.69 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.09 0.98 6.86 -51.93 -0.36 0.62 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.65 7.05 -51.93 -0.37 0.29 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -32.72 306.10 -8.18 -40.91 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.91 Total: -3.47 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.94 Total: -9.94 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.92 Total: -48.89 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.72 -8.18 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059382828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.043 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds