Wall clock time and date at job start Thu Apr 9 2020 12:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47073 * 300.00470 * 3 2 1 6 6 H 1.48500 * 109.46864 * 60.00560 * 3 2 1 7 7 C 1.38813 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00303 * 163.12265 * 7 2 1 9 9 N 1.36941 * 119.99791 * 342.84053 * 7 2 1 10 10 C 1.46916 * 120.55329 * 331.97757 * 9 7 2 11 11 C 1.52739 * 108.84965 * 233.16689 * 10 9 7 12 12 C 1.52918 * 109.38856 * 305.86338 * 11 10 9 13 13 C 1.53913 * 109.36689 * 62.39138 * 12 11 10 14 14 C 1.46751 * 120.54794 * 152.25150 * 9 7 2 15 15 C 1.54856 * 107.10677 * 52.20132 * 13 12 11 16 16 C 1.50177 * 109.22351 * 43.78984 * 15 13 12 17 17 C 1.54312 * 112.87257 * 94.13055 * 16 15 13 18 18 C 1.53962 * 112.76654 * 318.02629 * 17 16 15 19 19 C 1.50536 * 111.98369 * 318.62981 * 18 17 16 20 20 C 1.45983 * 111.61325 * 174.43981 * 13 12 11 21 21 H 0.97000 * 119.99374 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.61436 * 352.95462 * 10 9 7 23 23 H 1.09002 * 109.61650 * 113.48496 * 10 9 7 24 24 H 1.09002 * 109.56741 * 185.82113 * 11 10 9 25 25 H 1.08998 * 109.34966 * 65.77098 * 11 10 9 26 26 H 1.08999 * 109.48852 * 302.42362 * 12 11 10 27 27 H 1.09005 * 109.50404 * 182.37147 * 12 11 10 28 28 H 1.09002 * 109.58963 * 245.34473 * 14 9 7 29 29 H 1.08996 * 109.59178 * 5.63595 * 14 9 7 30 30 H 1.09006 * 109.51312 * 163.72232 * 15 13 12 31 31 H 1.09004 * 109.51241 * 283.86392 * 15 13 12 32 32 H 1.08997 * 108.80407 * 333.25690 * 16 15 13 33 33 H 1.08993 * 108.80188 * 214.99990 * 16 15 13 34 34 H 1.09010 * 108.81972 * 197.18282 * 17 16 15 35 35 H 1.08992 * 108.74186 * 78.82121 * 17 16 15 36 36 H 1.09002 * 108.97643 * 197.98694 * 18 17 16 37 37 H 1.08997 * 108.91236 * 79.22947 * 18 17 16 38 38 H 1.09004 * 109.70380 * 334.86134 * 19 18 17 39 39 H 1.08999 * 109.73741 * 214.27348 * 19 18 17 40 40 H 1.08999 * 108.75670 * 62.73605 * 20 13 12 41 41 H 1.09004 * 108.75195 * 180.98369 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2223 -0.2721 9 7 1.3711 -2.3618 0.3488 10 6 0.2288 -2.3360 1.2724 11 6 0.4944 -3.3161 2.4134 12 6 0.8127 -4.6951 1.8343 13 6 2.0945 -4.6093 0.9867 14 6 1.8197 -3.6517 -0.1884 15 6 3.1811 -3.9479 1.8698 16 6 3.1313 -4.5462 3.2463 17 6 4.1179 -5.7190 3.4266 18 6 4.1516 -6.6616 2.2098 19 6 2.7747 -6.9206 1.6592 20 6 2.5171 -5.9250 0.5162 21 1 -0.4849 0.8401 0.0004 22 1 0.1073 -1.3308 1.6761 23 1 -0.6767 -2.6323 0.7428 24 1 -0.3881 -3.3834 3.0496 25 1 1.3417 -2.9642 3.0018 26 1 -0.0157 -5.0266 1.2083 27 1 0.9612 -5.4058 2.6474 28 1 1.0430 -4.0713 -0.8278 29 1 2.7321 -3.5091 -0.7673 30 1 4.1635 -4.1240 1.4315 31 1 2.9966 -2.8754 1.9320 32 1 2.1200 -4.9054 3.4369 33 1 3.3697 -3.7715 3.9749 34 1 3.8263 -6.2916 4.3072 35 1 5.1173 -5.3145 3.5860 36 1 4.5981 -7.6101 2.5085 37 1 4.7659 -6.2107 1.4305 38 1 2.0321 -6.7785 2.4445 39 1 2.7162 -7.9402 1.2785 40 1 1.7417 -6.3305 -0.1338 41 1 3.4345 -5.8125 -0.0617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075968319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:31 Heat of formation + Delta-G solvation = 6.765332 kcal Electronic energy + Delta-G solvation = -18689.760864 eV Core-core repulsion = 16183.403456 eV Total energy + Delta-G solvation = -2506.357407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.04481 -35.98658 -33.07038 -32.17123 -30.68188 -30.38500 -26.37720 -25.27356 -24.30984 -23.23752 -21.75927 -20.03179 -19.02677 -17.59706 -16.58952 -15.62361 -14.88950 -14.52351 -14.17891 -13.83869 -13.66581 -13.29097 -12.81060 -12.64825 -12.49577 -11.94822 -11.76124 -11.43161 -11.29553 -10.99155 -10.83604 -10.75715 -10.35375 -10.30350 -10.17134 -10.01073 -9.95177 -9.87371 -9.72087 -9.43901 -9.32968 -9.02343 -8.38588 -6.56759 -5.73214 -3.14797 3.39467 3.47552 3.49591 4.53568 4.91005 5.03756 5.11875 5.40119 5.45604 5.49971 5.57275 5.59464 5.70895 5.76828 5.85506 5.91982 6.02179 6.11056 6.18987 6.22166 6.35027 6.42496 6.44329 6.50025 6.53717 6.60097 6.67041 6.71092 6.79167 6.80194 6.86478 7.02967 7.06239 7.15683 7.30740 7.50470 7.74908 7.85800 8.51581 9.28125 9.92649 10.49273 11.35021 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.035609 B = 0.007719 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.120003 B = 3626.699337 C = 3806.734429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.103 4.103 13 C -0.077 4.077 14 C 0.158 3.842 15 C -0.102 4.102 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.097 4.097 21 H 0.252 0.748 22 H 0.083 0.917 23 H 0.013 0.987 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.013 0.987 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -11.719 5.310 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.308 5.308 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.140 4.140 13 C -0.079 4.079 14 C 0.031 3.969 15 C -0.140 4.140 16 C -0.169 4.169 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.135 4.135 21 H 0.062 0.938 22 H 0.101 0.899 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.704 -11.542 5.289 13.540 hybrid contribution 0.391 0.900 -0.004 0.981 sum 5.095 -10.642 5.285 12.929 Atomic orbital electron populations 1.70058 1.05235 1.25197 1.54239 1.25016 0.95232 0.98286 1.01192 0.86281 0.79414 0.84250 0.77217 1.20293 1.21827 1.21652 1.19211 0.92525 0.84864 1.41148 0.91773 1.43938 1.35630 1.01233 1.50015 1.20651 0.88556 0.98042 0.88107 1.22223 1.00005 0.96511 0.99942 1.21807 0.96716 0.97279 0.98200 1.20299 0.95178 0.94547 0.97846 1.21054 0.97005 0.86730 0.92073 1.21440 0.97110 1.01919 0.93513 1.21651 1.00397 0.96576 0.98317 1.21943 0.99374 0.96629 0.97232 1.21320 0.97504 0.98311 0.98092 1.21285 0.97363 0.98075 0.98780 1.20319 1.00824 0.94991 0.97343 0.93817 0.89876 0.96848 0.93918 0.91966 0.93371 0.92786 0.96888 0.93228 0.93658 0.89361 0.90561 0.93357 0.93230 0.93135 0.93284 0.92182 0.91345 0.92797 0.93010 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.20 55.49 0.62 -25.84 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.78 9.25 -15.06 -0.14 -6.92 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.60 1.93 -172.21 -0.33 -14.94 16 10 C 0.17 4.15 5.28 -3.95 -0.02 4.13 16 11 C -0.15 -2.86 5.32 -26.91 -0.14 -3.00 16 12 C -0.10 -1.76 4.00 -26.30 -0.11 -1.87 16 13 C -0.08 -1.32 0.57 -155.83 -0.09 -1.41 16 14 C 0.16 3.36 5.24 -3.35 -0.02 3.34 16 15 C -0.10 -1.77 3.86 -27.16 -0.10 -1.88 16 16 C -0.13 -1.96 4.05 -27.45 -0.11 -2.08 16 17 C -0.11 -1.44 5.86 -25.54 -0.15 -1.59 16 18 C -0.11 -1.39 5.35 -27.46 -0.15 -1.54 16 19 C -0.12 -1.47 5.54 -27.57 -0.15 -1.63 16 20 C -0.10 -1.41 4.10 -29.66 -0.12 -1.53 16 21 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 22 H 0.08 2.25 6.08 -51.93 -0.32 1.93 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.21 5.41 -51.93 -0.28 0.93 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.83 4.23 -51.93 -0.22 0.61 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 30 H 0.04 0.77 7.03 -51.93 -0.36 0.40 16 31 H 0.09 1.85 5.71 -51.93 -0.30 1.55 16 32 H 0.08 1.14 3.86 -51.93 -0.20 0.94 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.76 6.63 -51.93 -0.34 0.42 16 38 H 0.07 0.89 5.17 -51.93 -0.27 0.62 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.81 7.39 -51.93 -0.38 0.42 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -28.23 284.40 -8.70 -36.93 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.86 Total: -1.26 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.39 Total: -16.03 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.29 Total: -40.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.23 -8.70 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075968319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.696 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds