Wall clock time and date at job start Thu Apr 9 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47073 * 300.00470 * 3 2 1 6 6 H 1.48500 * 109.46864 * 60.00560 * 3 2 1 7 7 C 1.38813 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00303 * 163.12265 * 7 2 1 9 9 N 1.36941 * 119.99791 * 342.84053 * 7 2 1 10 10 C 1.46916 * 120.55329 * 331.97757 * 9 7 2 11 11 C 1.52739 * 108.84965 * 233.16689 * 10 9 7 12 12 C 1.52918 * 109.38856 * 305.86338 * 11 10 9 13 13 C 1.53913 * 109.36689 * 62.39138 * 12 11 10 14 14 C 1.46751 * 120.54794 * 152.25150 * 9 7 2 15 15 C 1.54856 * 107.10677 * 52.20132 * 13 12 11 16 16 C 1.50177 * 109.22351 * 43.78984 * 15 13 12 17 17 C 1.54312 * 112.87257 * 94.13055 * 16 15 13 18 18 C 1.53962 * 112.76654 * 318.02629 * 17 16 15 19 19 C 1.50536 * 111.98369 * 318.62981 * 18 17 16 20 20 C 1.45983 * 111.61325 * 174.43981 * 13 12 11 21 21 H 0.97000 * 119.99374 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.61436 * 352.95462 * 10 9 7 23 23 H 1.09002 * 109.61650 * 113.48496 * 10 9 7 24 24 H 1.09002 * 109.56741 * 185.82113 * 11 10 9 25 25 H 1.08998 * 109.34966 * 65.77098 * 11 10 9 26 26 H 1.08999 * 109.48852 * 302.42362 * 12 11 10 27 27 H 1.09005 * 109.50404 * 182.37147 * 12 11 10 28 28 H 1.09002 * 109.58963 * 245.34473 * 14 9 7 29 29 H 1.08996 * 109.59178 * 5.63595 * 14 9 7 30 30 H 1.09006 * 109.51312 * 163.72232 * 15 13 12 31 31 H 1.09004 * 109.51241 * 283.86392 * 15 13 12 32 32 H 1.08997 * 108.80407 * 333.25690 * 16 15 13 33 33 H 1.08993 * 108.80188 * 214.99990 * 16 15 13 34 34 H 1.09010 * 108.81972 * 197.18282 * 17 16 15 35 35 H 1.08992 * 108.74186 * 78.82121 * 17 16 15 36 36 H 1.09002 * 108.97643 * 197.98694 * 18 17 16 37 37 H 1.08997 * 108.91236 * 79.22947 * 18 17 16 38 38 H 1.09004 * 109.70380 * 334.86134 * 19 18 17 39 39 H 1.08999 * 109.73741 * 214.27348 * 19 18 17 40 40 H 1.08999 * 108.75670 * 62.73605 * 20 13 12 41 41 H 1.09004 * 108.75195 * 180.98369 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2223 -0.2721 9 7 1.3711 -2.3618 0.3488 10 6 0.2288 -2.3360 1.2724 11 6 0.4944 -3.3161 2.4134 12 6 0.8127 -4.6951 1.8343 13 6 2.0945 -4.6093 0.9867 14 6 1.8197 -3.6517 -0.1884 15 6 3.1811 -3.9479 1.8698 16 6 3.1313 -4.5462 3.2463 17 6 4.1179 -5.7190 3.4266 18 6 4.1516 -6.6616 2.2098 19 6 2.7747 -6.9206 1.6592 20 6 2.5171 -5.9250 0.5162 21 1 -0.4849 0.8401 0.0004 22 1 0.1073 -1.3308 1.6761 23 1 -0.6767 -2.6323 0.7428 24 1 -0.3881 -3.3834 3.0496 25 1 1.3417 -2.9642 3.0018 26 1 -0.0157 -5.0266 1.2083 27 1 0.9612 -5.4058 2.6474 28 1 1.0430 -4.0713 -0.8278 29 1 2.7321 -3.5091 -0.7673 30 1 4.1635 -4.1240 1.4315 31 1 2.9966 -2.8754 1.9320 32 1 2.1200 -4.9054 3.4369 33 1 3.3697 -3.7715 3.9749 34 1 3.8263 -6.2916 4.3072 35 1 5.1173 -5.3145 3.5860 36 1 4.5981 -7.6101 2.5085 37 1 4.7659 -6.2107 1.4305 38 1 2.0321 -6.7785 2.4445 39 1 2.7162 -7.9402 1.2785 40 1 1.7417 -6.3305 -0.1338 41 1 3.4345 -5.8125 -0.0617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075968319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:29 Heat of formation + Delta-G solvation = -7.067362 kcal Electronic energy + Delta-G solvation = -18690.360694 eV Core-core repulsion = 16183.403456 eV Total energy + Delta-G solvation = -2506.957238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44249 -37.55444 -34.76947 -33.44869 -32.33065 -32.11390 -27.89305 -27.12539 -25.49658 -24.73713 -23.40983 -21.73580 -20.09816 -19.04567 -18.58614 -16.99566 -16.72836 -15.95068 -15.48707 -15.44948 -15.03185 -14.97786 -14.45470 -14.18070 -13.73120 -13.36129 -13.22504 -13.06644 -12.74651 -12.72109 -12.60828 -12.35674 -12.00255 -11.91857 -11.75313 -11.57068 -11.16815 -11.13933 -11.05108 -10.90038 -10.87995 -10.54864 -10.44911 -8.61780 -7.85985 -5.30482 1.43595 1.45425 1.55917 2.50649 3.27680 3.70227 3.72329 3.89860 4.08329 4.26471 4.33421 4.35479 4.43492 4.47000 4.55161 4.66253 4.70809 4.82688 4.89611 4.98264 5.03088 5.04102 5.10026 5.14334 5.20349 5.30401 5.31514 5.42368 5.45715 5.51319 5.55021 5.56717 5.59893 5.66676 5.68400 5.77465 5.80976 5.92518 6.40791 7.16713 7.89732 8.41117 9.20038 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.035609 B = 0.007719 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.120003 B = 3626.699337 C = 3806.734429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.137 4.137 12 C -0.098 4.098 13 C -0.062 4.062 14 C 0.153 3.847 15 C -0.095 4.095 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.097 4.097 21 H 0.248 0.752 22 H 0.048 0.952 23 H -0.013 1.013 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.003 0.997 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -13.818 6.508 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.135 4.135 13 C -0.064 4.064 14 C 0.027 3.973 15 C -0.132 4.132 16 C -0.165 4.165 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.135 4.135 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.005 0.995 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.981 -13.671 6.488 16.272 hybrid contribution -0.001 1.548 -0.433 1.607 sum 5.980 -12.124 6.055 14.812 Atomic orbital electron populations 1.70208 1.06647 1.25588 1.55840 1.25750 0.95990 1.01347 1.01654 0.85271 0.78645 0.80185 0.76782 1.19198 1.21955 1.21668 1.19478 0.92597 0.86103 1.40222 0.92023 1.44129 1.35602 1.01938 1.50612 1.20462 0.87528 0.97498 0.89189 1.22059 1.00801 0.96536 0.98158 1.21796 0.96379 0.96310 0.99017 1.20166 0.95419 0.94953 0.95827 1.21226 0.96090 0.86179 0.93770 1.21294 0.97005 0.99563 0.95383 1.21576 1.01375 0.97425 0.96143 1.21916 0.98721 0.95869 0.98334 1.21327 0.97234 0.99131 0.97539 1.21253 0.97565 0.98299 0.97675 1.20307 1.00886 0.93843 0.98494 0.94242 0.93358 0.99461 0.92082 0.92041 0.93740 0.89553 0.97894 0.93923 0.93598 0.93425 0.90344 0.93805 0.91417 0.92891 0.91087 0.93021 0.91243 0.90693 0.92721 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.92 11.20 21.65 0.24 -56.67 16 2 C -0.05 -3.00 4.91 84.86 0.42 -2.59 16 3 Si 0.96 46.03 29.59 68.60 2.03 48.06 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.25 -14.29 9.25 84.03 0.78 -13.52 16 8 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 9 N -0.60 -30.85 1.93 -698.75 -1.35 -32.20 16 10 C 0.18 8.94 5.28 86.21 0.45 9.39 16 11 C -0.14 -5.23 5.32 30.48 0.16 -5.07 16 12 C -0.10 -3.18 4.00 30.87 0.12 -3.06 16 13 C -0.06 -2.06 0.57 -53.04 -0.03 -2.09 16 14 C 0.15 6.60 5.24 86.69 0.45 7.06 16 15 C -0.09 -3.19 3.86 30.32 0.12 -3.07 16 16 C -0.13 -3.49 4.05 30.13 0.12 -3.37 16 17 C -0.11 -2.39 5.86 31.36 0.18 -2.21 16 18 C -0.11 -2.32 5.35 30.12 0.16 -2.15 16 19 C -0.11 -2.31 5.54 30.05 0.17 -2.15 16 20 C -0.10 -2.59 4.10 28.69 0.12 -2.48 16 21 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 22 H 0.05 2.73 6.08 -2.39 -0.01 2.72 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 2.37 5.41 -2.39 -0.01 2.36 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 2.32 4.23 -2.38 -0.01 2.31 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.04 1.85 7.92 -2.39 -0.02 1.83 16 30 H 0.05 1.51 7.03 -2.38 -0.02 1.49 16 31 H 0.05 2.00 5.71 -2.38 -0.01 1.99 16 32 H 0.08 2.08 3.86 -2.39 -0.01 2.08 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.14 6.63 -2.39 -0.02 1.13 16 38 H 0.07 1.46 5.17 -2.38 -0.01 1.45 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.51 7.39 -2.39 -0.02 1.50 16 Total: -1.00 -62.60 284.40 5.14 -57.46 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.99 Total: 8.64 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 3.23 Total: -25.29 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -1.11 Total: -88.87 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -62.60 5.14 -57.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075968319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.391 kcal (2) G-P(sol) polarization free energy of solvation -62.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds