Wall clock time and date at job start Thu Apr 9 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47380 * 2 1 4 4 N 1.46504 * 109.46997 * 119.99693 * 2 1 3 5 5 C 1.36876 * 126.40093 * 300.34363 * 4 2 1 6 6 C 1.34665 * 106.82156 * 180.12098 * 5 4 2 7 7 N 1.34127 * 108.01668 * 359.58498 * 6 5 4 8 8 C 1.30500 * 109.25894 * 0.26753 * 7 6 5 9 9 C 1.50704 * 125.64894 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46780 * 90.02287 * 9 8 7 11 11 C 1.46903 * 110.99479 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47395 * 34.99919 * 11 10 9 13 13 C 1.53003 * 109.46913 * 274.99749 * 11 10 9 14 14 C 1.50706 * 109.47054 * 155.00081 * 11 10 9 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99994 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00156 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00049 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46828 * 90.00346 * 18 16 14 20 20 H 1.48492 * 109.47164 * 210.00189 * 18 16 14 21 21 H 1.48495 * 109.47050 * 330.00644 * 18 16 14 22 22 H 1.09006 * 109.47266 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47010 * 300.00444 * 1 2 3 24 24 H 1.09003 * 109.46839 * 60.00235 * 1 2 3 25 25 H 1.09004 * 109.47010 * 239.99556 * 2 1 3 26 26 H 1.09000 * 109.47204 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46943 * 299.99701 * 3 2 1 28 28 H 1.08996 * 109.47561 * 59.99521 * 3 2 1 29 29 H 1.08002 * 126.59064 * 0.02562 * 5 4 2 30 30 H 1.08002 * 125.99463 * 179.85418 * 6 5 4 31 31 H 1.08997 * 109.46911 * 210.01824 * 9 8 7 32 32 H 1.08994 * 109.46872 * 330.02168 * 9 8 7 33 33 H 1.00902 * 111.00220 * 303.94693 * 10 9 8 34 34 H 1.08998 * 109.46976 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.47229 * 300.00272 * 13 11 10 36 36 H 1.09000 * 109.47080 * 60.00584 * 13 11 10 37 37 H 0.97001 * 120.00134 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7643 -0.3428 2.4955 6 6 2.4043 -1.2385 3.2710 7 7 3.0246 -2.1150 2.4671 8 6 2.7978 -1.7930 1.2229 9 6 3.3198 -2.5292 0.0160 10 7 2.3586 -3.5680 -0.3775 11 6 2.8350 -4.3076 -1.5539 12 1 3.9201 -4.4012 -1.5094 13 6 2.4399 -3.5531 -2.8250 14 6 2.2126 -5.6800 -1.5705 15 1 1.5310 -5.9733 -0.7858 16 6 2.5126 -6.5607 -2.5879 17 7 3.3422 -6.2034 -3.5438 18 14 1.7417 -8.2621 -2.6081 19 1 0.4619 -8.2168 -3.3601 20 1 2.6686 -9.2178 -3.2657 21 1 1.4815 -8.7042 -1.2146 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.1668 0.4909 2.8337 30 1 2.4129 -1.2518 4.3509 31 1 3.4540 -1.8277 -0.8074 32 1 4.2763 -2.9922 0.2585 33 1 2.1680 -4.1939 0.3907 34 1 2.7930 -4.1020 -3.6979 35 1 1.3549 -3.4594 -2.8695 36 1 2.8901 -2.5604 -2.8131 37 1 3.5536 -6.8232 -4.2594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597082469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:40 Heat of formation + Delta-G solvation = 52.128021 kcal Electronic energy + Delta-G solvation = -17086.937247 eV Core-core repulsion = 14479.006570 eV Total energy + Delta-G solvation = -2607.930677 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84612 -35.94729 -35.89294 -32.73832 -30.53402 -30.20834 -27.85712 -27.41053 -25.40551 -24.22476 -22.71267 -20.59549 -19.83267 -19.12367 -17.17629 -16.23440 -15.27283 -14.96536 -14.63967 -14.20306 -13.87484 -13.54023 -13.50541 -13.22428 -12.87651 -12.40624 -12.31999 -12.18934 -11.82301 -11.48418 -11.24019 -11.06517 -10.88045 -10.74233 -10.36189 -10.17757 -10.02783 -9.61976 -9.32317 -8.87186 -8.49129 -8.09117 -7.34552 -6.03540 -4.09589 2.32993 3.00536 3.30797 3.37047 3.40968 3.46867 4.40897 4.56227 4.81443 4.85301 4.92304 5.08204 5.28008 5.36097 5.44331 5.52208 5.57924 5.61971 5.71116 5.77736 5.91343 6.07589 6.10734 6.20182 6.65559 6.79834 7.05203 7.06829 7.15624 7.41556 7.50419 7.77266 7.85316 8.22743 8.33209 8.46590 8.61672 8.99712 9.56389 11.02916 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.005838 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.202658 B = 4795.374656 C = 5152.832137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.160 4.160 4 N -0.440 5.440 5 C -0.066 4.066 6 C -0.033 4.033 7 N -0.496 5.496 8 C 0.229 3.771 9 C 0.140 3.860 10 N -0.683 5.683 11 C 0.211 3.789 12 H 0.004 0.996 13 C -0.124 4.124 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.339 0.661 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.002 0.998 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 14.352 6.312 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.218 4.218 4 N -0.123 5.123 5 C -0.199 4.199 6 C -0.182 4.182 7 N -0.215 5.215 8 C -0.034 4.034 9 C 0.009 3.991 10 N -0.316 5.316 11 C 0.104 3.896 12 H 0.022 0.978 13 C -0.182 4.182 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.127 0.873 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.392 14.122 5.890 15.673 hybrid contribution -0.283 -0.661 0.157 0.736 sum -3.675 13.461 6.048 15.208 Atomic orbital electron populations 1.22104 0.93281 1.03746 1.02402 1.21469 0.95711 0.93372 0.87227 1.22165 1.01997 0.94769 1.02889 1.45520 1.37737 1.22698 1.06308 1.22433 1.08903 1.05055 0.83552 1.22188 1.01729 0.94942 0.99337 1.70270 1.24558 1.26891 0.99798 1.23475 0.96223 0.88511 0.95169 1.20242 0.94685 0.94648 0.89563 1.60817 1.43448 1.17377 1.09977 1.19141 0.93842 0.91075 0.85518 0.97798 1.21733 0.98981 0.95952 1.01581 1.21235 1.27367 0.97432 1.09488 0.92163 1.24904 0.95041 0.98614 0.95393 1.69890 1.34763 1.35790 1.12524 0.86504 0.78979 0.83756 0.78222 1.20662 1.21254 1.19874 0.90990 0.92368 0.90824 0.87273 0.91927 0.90637 0.92045 0.81777 0.81960 0.90625 0.92914 0.84302 0.89924 0.94960 0.97900 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.25 37.16 0.34 -1.36 16 2 C 0.13 1.51 3.52 -67.93 -0.24 1.27 16 3 C -0.16 -1.49 9.25 37.16 0.34 -1.15 16 4 N -0.44 -6.47 2.61 -106.83 -0.28 -6.75 16 5 C -0.07 -0.89 10.60 -16.57 -0.18 -1.06 16 6 C -0.03 -0.51 11.87 -17.81 -0.21 -0.72 16 7 N -0.50 -9.30 11.25 -10.81 -0.12 -9.42 16 8 C 0.23 4.09 7.42 -155.41 -1.15 2.94 16 9 C 0.14 2.64 5.62 -4.97 -0.03 2.62 16 10 N -0.68 -14.81 6.29 -109.21 -0.69 -15.50 16 11 C 0.21 5.30 2.60 -68.86 -0.18 5.13 16 12 H 0.00 0.12 7.80 -51.93 -0.41 -0.29 16 13 C -0.12 -2.98 9.19 37.16 0.34 -2.64 16 14 C -0.52 -14.20 8.59 -34.44 -0.30 -14.50 16 15 H 0.06 1.66 7.62 -52.48 -0.40 1.26 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.11 1.47 6.67 -51.93 -0.35 1.12 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 29 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.08 1.34 6.37 -51.93 -0.33 1.01 16 32 H 0.05 1.04 8.06 -51.93 -0.42 0.63 16 33 H 0.34 7.69 8.22 -39.29 -0.32 7.37 16 34 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.00 0.04 7.45 -51.93 -0.39 -0.34 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -30.00 304.84 -8.08 -38.08 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.85 Total: 5.14 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.35 Total: -7.85 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.46 Total: -56.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.00 -8.08 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597082469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.206 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds