Wall clock time and date at job start Thu Apr 9 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.50692 * 109.47279 * 65.00126 * 4 2 1 6 6 H 1.08008 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00230 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00065 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99677 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47422 * 89.99919 * 9 7 5 11 11 H 1.48497 * 109.47139 * 210.00014 * 9 7 5 12 12 H 1.48503 * 109.47375 * 329.99872 * 9 7 5 13 13 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 14 14 N 1.46897 * 109.47488 * 294.99728 * 13 2 1 15 15 C 1.46904 * 110.99957 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47206 * 180.02562 * 15 14 13 17 17 N 1.46493 * 109.47312 * 180.02562 * 16 15 14 18 18 C 1.36876 * 126.40050 * 90.00197 * 17 16 15 19 19 C 1.34669 * 106.82241 * 180.02562 * 18 17 16 20 20 N 1.34126 * 108.01676 * 0.02562 * 19 18 17 21 21 C 1.30502 * 109.25734 * 359.72470 * 20 19 18 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 26 26 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 27 27 H 0.97001 * 119.99810 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47016 * 55.00506 * 13 2 1 29 29 H 1.09000 * 109.46709 * 175.00070 * 13 2 1 30 30 H 1.00901 * 110.99808 * 56.05494 * 14 13 2 31 31 H 1.08998 * 109.47529 * 300.00301 * 15 14 13 32 32 H 1.09007 * 109.46917 * 60.00488 * 15 14 13 33 33 H 1.08995 * 109.47263 * 300.00953 * 16 15 14 34 34 H 1.09007 * 109.46870 * 60.00354 * 16 15 14 35 35 H 1.08007 * 126.58814 * 359.96403 * 18 17 16 36 36 H 1.07997 * 125.99084 * 180.02562 * 19 18 17 37 37 H 1.07999 * 125.65064 * 180.29628 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3757 7 6 1.9934 -0.4017 -3.7283 8 7 1.6459 0.2778 -4.7993 9 14 2.9637 -1.9883 -3.9027 10 1 2.0245 -3.1327 -4.0200 11 1 3.8128 -1.9181 -5.1189 12 1 3.8253 -2.1756 -2.7077 13 6 2.0399 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.1246 -0.6271 3.6673 16 6 1.7013 0.1904 4.8894 17 7 2.1738 -0.4720 6.1076 18 6 3.3770 -0.2694 6.7279 19 6 3.4009 -1.0770 7.8053 20 7 2.2440 -1.7547 7.8415 21 6 1.5018 -1.3935 6.8307 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.1264 -0.7995 -1.2055 26 1 1.6055 -1.7198 -1.2951 27 1 1.8932 -0.0452 -5.6799 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 0.6528 0.1793 2.4753 31 1 1.6902 -1.6248 3.7298 32 1 3.2116 -0.7051 3.6407 33 1 2.1353 1.1883 4.8271 34 1 0.6143 0.2679 4.9158 35 1 4.1576 0.4074 6.4131 36 1 4.2098 -1.1637 8.5156 37 1 0.5145 -1.7706 6.6083 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:01 Heat of formation + Delta-G solvation = 48.224732 kcal Electronic energy + Delta-G solvation = -16075.774909 eV Core-core repulsion = 13467.674973 eV Total energy + Delta-G solvation = -2608.099936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20529 -37.53007 -35.28655 -33.35544 -31.95919 -29.70915 -28.74038 -27.31818 -25.31454 -23.11546 -21.88745 -21.52101 -21.04824 -19.12797 -17.61564 -16.90344 -16.20079 -15.44747 -14.91793 -14.56629 -14.19599 -14.03972 -13.89522 -13.77934 -13.28897 -12.84180 -12.72337 -12.33844 -12.06134 -11.75815 -11.56772 -11.10033 -10.78755 -10.52666 -10.19071 -9.90506 -9.89871 -9.77943 -9.50264 -9.11953 -8.72595 -8.56007 -8.49642 -6.06012 -4.03431 1.85343 2.52034 2.99233 3.28152 3.36213 3.39130 4.15999 4.35376 4.43131 4.51807 4.64178 4.75193 4.97855 5.18584 5.27272 5.28351 5.47071 5.49915 5.56423 5.59924 5.83782 6.02147 6.06683 6.24757 6.34427 6.53027 6.62997 6.86832 6.94625 6.96315 7.03459 7.24363 7.30733 7.43390 7.77807 7.87347 8.52491 8.99171 9.56688 11.07353 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051852 B = 0.003621 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.872396 B = 7731.398272 C = 7994.031477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.073 0.927 4 C -0.008 4.008 5 C -0.515 4.515 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.063 3.937 14 N -0.686 5.686 15 C 0.044 3.956 16 C 0.105 3.895 17 N -0.455 5.455 18 C -0.053 4.053 19 C -0.035 4.035 20 N -0.499 5.499 21 C 0.179 3.821 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.015 0.985 26 H 0.009 0.991 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.341 0.659 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -1.222 20.361 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.553 4.553 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.543 5.543 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.318 5.318 15 C -0.086 4.086 16 C -0.018 4.018 17 N -0.138 5.138 18 C -0.186 4.186 19 C -0.183 4.183 20 N -0.217 5.217 21 C -0.103 4.103 22 H 0.088 0.912 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.745 -1.307 20.593 20.648 hybrid contribution 0.152 -1.019 -0.918 1.380 sum 0.896 -2.325 19.675 19.832 Atomic orbital electron populations 1.21763 0.96130 1.00583 1.00906 1.21046 0.95294 1.00250 0.92874 0.90890 1.19598 0.95969 0.95702 0.93361 1.21116 1.35443 1.09632 0.89067 0.90797 1.25030 0.95620 0.96957 0.95957 1.69912 1.47108 1.39283 0.98037 0.86804 0.80649 0.84273 0.77681 1.20405 1.21414 1.19115 1.22190 1.00513 0.94514 0.89308 1.60499 1.19905 1.50411 1.01025 1.22243 1.01703 0.95333 0.89353 1.21891 1.01065 0.97369 0.81474 1.45573 1.14581 1.32377 1.21296 1.22801 0.90774 1.06885 0.98140 1.22308 0.97593 0.98704 0.99671 1.70286 1.04495 1.25641 1.21264 1.25008 1.00346 0.93876 0.91114 0.91176 0.94017 0.94736 0.96660 0.97223 0.92772 0.95530 0.91303 0.83978 0.94751 0.90400 0.87934 0.88871 0.80882 0.81462 0.78112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.77 37.16 0.33 -2.01 16 2 C -0.08 -1.40 2.55 -90.62 -0.23 -1.63 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 5 C -0.51 -14.23 8.96 -34.44 -0.31 -14.54 16 6 H 0.07 2.19 7.30 -52.48 -0.38 1.81 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 13 C 0.06 0.95 5.14 -3.83 -0.02 0.93 16 14 N -0.69 -8.20 6.50 -113.77 -0.74 -8.94 16 15 C 0.04 0.43 6.01 -3.82 -0.02 0.41 16 16 C 0.10 0.81 6.41 -4.04 -0.03 0.78 16 17 N -0.46 -4.20 2.75 -118.58 -0.33 -4.53 16 18 C -0.05 -0.49 11.58 -16.56 -0.19 -0.68 16 19 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 20 N -0.50 -6.20 11.25 -14.67 -0.16 -6.36 16 21 C 0.18 1.80 12.56 -90.37 -1.14 0.67 16 22 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 25 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.34 3.70 6.98 -39.29 -0.27 3.42 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -31.93 305.82 -8.48 -40.42 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.95 Total: -0.06 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.02 Total: -15.16 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.46 Total: -46.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.93 -8.48 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.642 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds