Wall clock time and date at job start Thu Apr 9 2020 12:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.50692 * 109.47279 * 65.00126 * 4 2 1 6 6 H 1.08008 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00230 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00065 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99677 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47422 * 89.99919 * 9 7 5 11 11 H 1.48497 * 109.47139 * 210.00014 * 9 7 5 12 12 H 1.48503 * 109.47375 * 329.99872 * 9 7 5 13 13 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 14 14 N 1.46897 * 109.47488 * 294.99728 * 13 2 1 15 15 C 1.46904 * 110.99957 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47206 * 180.02562 * 15 14 13 17 17 N 1.46493 * 109.47312 * 180.02562 * 16 15 14 18 18 C 1.36876 * 126.40050 * 90.00197 * 17 16 15 19 19 C 1.34669 * 106.82241 * 180.02562 * 18 17 16 20 20 N 1.34126 * 108.01676 * 0.02562 * 19 18 17 21 21 C 1.30502 * 109.25734 * 359.72470 * 20 19 18 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 26 26 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 27 27 H 0.97001 * 119.99810 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47016 * 55.00506 * 13 2 1 29 29 H 1.09000 * 109.46709 * 175.00070 * 13 2 1 30 30 H 1.00901 * 110.99808 * 56.05494 * 14 13 2 31 31 H 1.08998 * 109.47529 * 300.00301 * 15 14 13 32 32 H 1.09007 * 109.46917 * 60.00488 * 15 14 13 33 33 H 1.08995 * 109.47263 * 300.00953 * 16 15 14 34 34 H 1.09007 * 109.46870 * 60.00354 * 16 15 14 35 35 H 1.08007 * 126.58814 * 359.96403 * 18 17 16 36 36 H 1.07997 * 125.99084 * 180.02562 * 19 18 17 37 37 H 1.07999 * 125.65064 * 180.29628 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3757 7 6 1.9934 -0.4017 -3.7283 8 7 1.6459 0.2778 -4.7993 9 14 2.9637 -1.9883 -3.9027 10 1 2.0245 -3.1327 -4.0200 11 1 3.8128 -1.9181 -5.1189 12 1 3.8253 -2.1756 -2.7077 13 6 2.0399 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.1246 -0.6271 3.6673 16 6 1.7013 0.1904 4.8894 17 7 2.1738 -0.4720 6.1076 18 6 3.3770 -0.2694 6.7279 19 6 3.4009 -1.0770 7.8053 20 7 2.2440 -1.7547 7.8415 21 6 1.5018 -1.3935 6.8307 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.1264 -0.7995 -1.2055 26 1 1.6055 -1.7198 -1.2951 27 1 1.8932 -0.0452 -5.6799 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 0.6528 0.1793 2.4753 31 1 1.6902 -1.6248 3.7298 32 1 3.2116 -0.7051 3.6407 33 1 2.1353 1.1883 4.8271 34 1 0.6143 0.2679 4.9158 35 1 4.1576 0.4074 6.4131 36 1 4.2098 -1.1637 8.5156 37 1 0.5145 -1.7706 6.6083 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602505733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:00 Heat of formation + Delta-G solvation = 28.080746 kcal Electronic energy + Delta-G solvation = -16076.648418 eV Core-core repulsion = 13467.674973 eV Total energy + Delta-G solvation = -2608.973445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.91090 -38.68776 -36.44554 -34.78184 -33.61046 -30.48538 -29.95971 -28.76746 -26.60275 -24.30656 -23.26206 -22.24302 -21.75253 -20.65158 -18.99129 -18.24375 -17.23514 -16.51927 -16.15741 -15.64281 -15.46719 -15.25428 -14.85775 -14.68151 -14.57078 -14.02178 -13.87907 -13.76606 -13.44108 -13.09003 -12.82058 -12.59854 -12.30125 -12.10914 -11.72850 -11.47665 -11.26509 -11.07896 -10.94275 -10.74295 -10.55566 -9.46610 -9.43237 -8.26603 -6.28821 1.15350 1.35206 1.37336 1.48529 1.85242 2.23801 2.37017 3.08879 3.25145 3.74617 3.89608 3.92811 4.10712 4.17596 4.20634 4.36327 4.40584 4.51275 4.64454 4.71959 4.80315 4.84522 4.85679 4.98440 5.05018 5.29508 5.37359 5.38345 5.54487 5.68161 5.73050 5.83683 5.96268 6.28943 6.33849 6.44190 6.79269 7.15241 7.34927 8.90130 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051852 B = 0.003621 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.872396 B = 7731.398272 C = 7994.031477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.056 0.944 4 C -0.008 4.008 5 C -0.518 4.518 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.248 1.248 13 C 0.076 3.924 14 N -0.686 5.686 15 C 0.051 3.949 16 C 0.112 3.888 17 N -0.455 5.455 18 C -0.052 4.052 19 C -0.060 4.060 20 N -0.540 5.540 21 C 0.174 3.826 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.350 0.650 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.197 0.803 36 H 0.180 0.820 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 -2.246 21.962 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.046 4.046 5 C -0.556 4.556 6 H 0.055 0.945 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.171 1.171 13 C -0.053 4.053 14 N -0.319 5.319 15 C -0.079 4.079 16 C -0.010 4.010 17 N -0.138 5.138 18 C -0.186 4.186 19 C -0.206 4.206 20 N -0.259 5.259 21 C -0.109 4.109 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.214 0.786 36 H 0.197 0.803 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.004 -2.323 22.222 22.366 hybrid contribution 0.025 -0.609 -1.396 1.523 sum 1.029 -2.932 20.827 21.057 Atomic orbital electron populations 1.21683 0.95085 1.01051 1.00969 1.20896 0.96175 0.99130 0.92874 0.92590 1.19568 0.95952 0.95663 0.93390 1.21466 1.34247 1.08723 0.91192 0.94537 1.25996 0.97024 1.00905 0.95603 1.70070 1.49132 1.41615 0.98723 0.85707 0.79371 0.79623 0.78224 1.19329 1.21287 1.17125 1.21875 1.00097 0.94466 0.88854 1.60364 1.20678 1.50125 1.00739 1.22178 1.01059 0.95596 0.89107 1.21892 1.02405 0.96869 0.79859 1.45668 1.14458 1.32200 1.21464 1.23198 0.91207 1.06563 0.97588 1.22668 0.97810 0.99320 1.00831 1.70253 1.05667 1.27103 1.22864 1.25535 1.01086 0.93643 0.90617 0.94749 0.93274 0.91063 0.96688 0.96584 0.92694 0.94835 0.91771 0.82952 0.94664 0.91376 0.87227 0.86698 0.78640 0.80328 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.77 71.98 0.63 -3.65 16 2 C -0.07 -2.57 2.55 -10.79 -0.03 -2.60 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.01 -0.35 3.52 29.84 0.10 -0.25 16 5 C -0.52 -29.21 8.96 25.60 0.23 -28.98 16 6 H 0.04 2.26 7.30 -2.91 -0.02 2.24 16 7 C 0.00 0.05 5.47 84.66 0.46 0.51 16 8 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 9 Si 0.95 44.05 27.47 68.60 1.88 45.94 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 13 C 0.08 2.09 5.14 86.30 0.44 2.54 16 14 N -0.69 -14.21 6.50 -513.87 -3.34 -17.55 16 15 C 0.05 0.84 6.01 86.30 0.52 1.36 16 16 C 0.11 1.34 6.41 86.38 0.55 1.89 16 17 N -0.46 -7.20 2.75 -529.07 -1.46 -8.65 16 18 C -0.05 -0.86 11.58 83.09 0.96 0.10 16 19 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 20 N -0.54 -12.84 11.25 -200.31 -2.25 -15.09 16 21 C 0.17 3.13 12.56 180.26 2.26 5.40 16 22 H 0.03 1.35 6.95 -2.39 -0.02 1.34 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.78 6.68 -2.39 -0.02 1.77 16 25 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 26 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 27 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.35 6.25 6.98 -89.69 -0.63 5.62 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.20 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.23 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -70.40 305.82 2.62 -67.78 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.35 Total: 10.96 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 7.14 Total: -23.89 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -6.75 Total: -100.78 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Total: -70.40 2.62 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.858 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds