Wall clock time and date at job start Thu Apr 9 2020 12:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47300 * 180.02562 * 16 15 14 18 18 C 1.34949 * 126.03711 * 124.99776 * 17 16 15 19 19 C 1.35315 * 107.74437 * 179.97438 * 18 17 16 20 20 C 1.39871 * 107.92038 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20187 * 359.73849 * 20 19 18 22 22 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 23 23 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 25 25 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 26 26 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 29 29 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 30 30 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 31 31 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 32 32 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 33 33 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 34 34 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 35 35 H 1.08001 * 126.12624 * 0.02562 * 18 17 16 36 36 H 1.08001 * 126.03524 * 179.97438 * 19 18 17 37 37 H 1.07994 * 125.89444 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 7 2.1751 -0.4721 -6.1074 18 6 1.4124 -0.8389 -7.1585 19 6 2.2234 -1.4165 -8.0749 20 6 3.5262 -1.4026 -7.5661 21 7 3.4993 -0.8321 -6.3890 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 3.1263 -0.7995 1.2057 26 1 1.6053 -1.7197 1.2953 27 1 2.9286 -2.0221 3.0617 28 1 3.1263 -0.7997 -1.2054 29 1 1.6053 -1.7200 -1.2950 30 1 1.9883 0.9871 -2.3967 31 1 3.2127 -0.7042 -3.6399 32 1 1.6921 -1.6250 -3.7299 33 1 0.6155 0.2673 -4.9162 34 1 2.1358 1.1886 -4.8266 35 1 0.3460 -0.6963 -7.2520 36 1 1.9184 -1.8179 -9.0300 37 1 4.4035 -1.7920 -8.0612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602519349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:06 Heat of formation + Delta-G solvation = 56.748139 kcal Electronic energy + Delta-G solvation = -16025.353948 eV Core-core repulsion = 13417.623615 eV Total energy + Delta-G solvation = -2607.730334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27761 -37.30989 -35.02971 -33.13399 -31.74938 -30.27139 -28.20741 -26.42894 -25.00458 -23.09658 -22.19295 -21.24123 -20.75443 -19.34240 -17.41675 -16.67789 -15.90606 -15.54468 -14.70052 -14.37441 -14.06377 -13.90722 -13.68114 -13.37084 -13.04372 -12.96974 -12.39023 -11.88607 -11.73946 -11.58546 -11.32394 -11.00973 -10.81800 -10.68062 -10.27140 -10.09161 -9.84987 -9.62666 -9.47634 -8.79760 -8.47754 -8.35582 -8.29814 -6.32606 -4.00932 1.72058 2.30335 2.67034 3.44988 3.47011 3.65635 4.10773 4.53218 4.58605 4.67086 4.73134 4.89284 5.08053 5.32208 5.43504 5.49224 5.54468 5.62867 5.73170 5.77905 5.82671 6.00416 6.25752 6.38566 6.45870 6.53813 6.79263 6.84835 7.00822 7.07062 7.14805 7.38694 7.44819 7.52782 7.58242 8.26037 8.49924 8.92168 9.70732 11.07828 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.069958 B = 0.003366 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.145856 B = 8317.547180 C = 8530.331400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.014 3.986 5 C -0.594 4.594 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.915 5.915 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.065 3.935 14 N -0.685 5.685 15 C 0.048 3.952 16 C 0.135 3.865 17 N -0.368 5.368 18 C 0.055 3.945 19 C -0.280 4.280 20 C 0.040 3.960 21 N -0.295 5.295 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.003 0.997 26 H 0.007 0.993 27 H 0.268 0.732 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.339 0.661 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.173 0.827 36 H 0.146 0.854 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 2.270 -21.557 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.633 4.633 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.064 4.064 14 N -0.316 5.316 15 C -0.082 4.082 16 C 0.013 3.987 17 N -0.151 5.151 18 C -0.091 4.091 19 C -0.309 4.309 20 C -0.146 4.146 21 N -0.117 5.117 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.191 0.809 36 H 0.164 0.836 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.790 2.430 -18.780 19.142 hybrid contribution 0.370 -0.145 -2.436 2.468 sum -2.420 2.286 -21.217 21.476 Atomic orbital electron populations 1.21583 0.95433 1.00591 1.00343 1.21075 0.96195 0.98891 0.93305 0.92572 1.19252 0.95171 0.95644 0.92307 1.22025 1.38688 1.10307 0.92260 0.93185 1.25836 0.94722 0.97145 1.01404 1.70781 1.36245 1.14684 1.33497 0.83564 0.76060 0.75124 0.75649 1.20837 1.21515 1.21461 1.22170 0.97387 0.97680 0.89122 1.60494 1.63871 1.05969 1.01301 1.22114 0.98916 0.98234 0.88956 1.21706 1.00453 0.95737 0.80766 1.48746 1.05256 1.46210 1.14895 1.22615 0.98433 0.99483 0.88612 1.21512 0.93106 1.13159 1.03144 1.23903 0.98514 0.99112 0.93033 1.77383 0.97235 1.19611 1.17483 0.93815 0.94233 0.92546 0.97843 0.97462 0.92181 0.95543 0.91476 0.84328 0.93890 0.90750 0.87674 0.89837 0.80947 0.83635 0.80169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.54 2.48 -90.62 -0.22 -1.77 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -16.91 8.41 -34.44 -0.29 -17.20 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.46 13.65 55.43 0.76 -27.70 16 9 Si 1.07 25.55 29.90 -169.99 -5.08 20.46 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.69 -9.44 5.96 -113.78 -0.68 -10.12 16 15 C 0.05 0.59 5.87 -3.82 -0.02 0.57 16 16 C 0.13 1.34 6.77 -4.04 -0.03 1.31 16 17 N -0.37 -4.15 3.68 -61.36 -0.23 -4.37 16 18 C 0.06 0.51 11.45 -17.22 -0.20 0.31 16 19 C -0.28 -2.55 10.80 -40.01 -0.43 -2.98 16 20 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 21 N -0.30 -3.85 12.42 30.62 0.38 -3.47 16 22 H 0.04 0.74 7.75 -51.93 -0.40 0.33 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.18 6.95 -51.93 -0.36 0.82 16 25 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 26 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 27 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.34 4.33 8.73 -39.29 -0.34 3.99 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 0.85 8.07 -51.92 -0.42 0.43 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 310.89 15.07 4.68 4.68 Total: -1.00 -32.68 310.89 -7.50 -40.18 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.05 Total: 0.30 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.29 Total: -19.97 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.23 Total: -45.66 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.68 -7.50 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.928 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds