Wall clock time and date at job start Thu Apr 9 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47300 * 180.02562 * 16 15 14 18 18 C 1.34949 * 126.03711 * 124.99776 * 17 16 15 19 19 C 1.35315 * 107.74437 * 179.97438 * 18 17 16 20 20 C 1.39871 * 107.92038 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20187 * 359.73849 * 20 19 18 22 22 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 23 23 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 25 25 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 26 26 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 29 29 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 30 30 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 31 31 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 32 32 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 33 33 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 34 34 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 35 35 H 1.08001 * 126.12624 * 0.02562 * 18 17 16 36 36 H 1.08001 * 126.03524 * 179.97438 * 19 18 17 37 37 H 1.07994 * 125.89444 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 7 2.1751 -0.4721 -6.1074 18 6 1.4124 -0.8389 -7.1585 19 6 2.2234 -1.4165 -8.0749 20 6 3.5262 -1.4026 -7.5661 21 7 3.4993 -0.8321 -6.3890 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 3.1263 -0.7995 1.2057 26 1 1.6053 -1.7197 1.2953 27 1 2.9286 -2.0221 3.0617 28 1 3.1263 -0.7997 -1.2054 29 1 1.6053 -1.7200 -1.2950 30 1 1.9883 0.9871 -2.3967 31 1 3.2127 -0.7042 -3.6399 32 1 1.6921 -1.6250 -3.7299 33 1 0.6155 0.2673 -4.9162 34 1 2.1358 1.1886 -4.8266 35 1 0.3460 -0.6963 -7.2520 36 1 1.9184 -1.8179 -9.0300 37 1 4.4035 -1.7920 -8.0612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602519349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:05 Heat of formation + Delta-G solvation = 35.116717 kcal Electronic energy + Delta-G solvation = -16026.291957 eV Core-core repulsion = 13417.623615 eV Total energy + Delta-G solvation = -2608.668342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.01144 -38.70184 -36.50459 -34.70679 -33.22283 -31.03961 -29.34935 -28.29326 -26.48363 -24.68696 -23.55864 -21.94784 -21.65058 -20.92741 -18.88551 -18.12461 -17.00861 -16.53455 -15.96011 -15.78853 -15.53253 -15.25962 -15.06632 -14.46882 -14.23412 -13.91816 -13.62898 -13.59543 -13.19877 -12.89427 -12.85081 -12.61002 -12.42936 -11.96174 -11.90205 -11.62738 -11.54718 -11.35855 -10.60654 -10.53473 -10.40333 -9.57588 -9.52015 -8.66891 -6.36259 0.99222 1.52167 1.57570 1.60950 1.79751 1.96571 2.57468 3.06655 3.17518 3.71115 3.78773 4.03148 4.06561 4.11926 4.20728 4.29884 4.36973 4.54188 4.68543 4.73235 4.75639 4.86112 4.86507 4.91871 5.05777 5.16277 5.29956 5.34675 5.45896 5.61868 5.72904 5.80908 6.04963 6.13562 6.20642 6.32190 6.60003 6.77954 7.45380 8.73742 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.069958 B = 0.003366 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.145856 B = 8317.547180 C = 8530.331400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 H 0.057 0.943 4 C 0.015 3.985 5 C -0.605 4.605 6 H 0.055 0.945 7 C -0.044 4.044 8 N -0.943 5.943 9 Si 1.117 2.883 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.673 5.673 15 C 0.057 3.943 16 C 0.141 3.859 17 N -0.381 5.381 18 C 0.055 3.945 19 C -0.287 4.287 20 C 0.033 3.967 21 N -0.347 5.347 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.038 0.962 25 H -0.020 1.020 26 H -0.014 1.014 27 H 0.253 0.747 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.349 0.651 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.208 0.792 36 H 0.170 0.830 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 3.577 -22.916 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.023 4.023 5 C -0.643 4.643 6 H 0.074 0.926 7 C -0.241 4.241 8 N -0.581 5.581 9 Si 0.938 3.062 10 H -0.212 1.212 11 H -0.193 1.193 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.305 5.305 15 C -0.073 4.073 16 C 0.019 3.981 17 N -0.165 5.165 18 C -0.091 4.091 19 C -0.317 4.317 20 C -0.152 4.152 21 N -0.169 5.169 22 H 0.093 0.907 23 H 0.052 0.948 24 H 0.057 0.943 25 H -0.002 1.002 26 H 0.004 0.996 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.187 0.813 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.389 3.749 -20.183 20.992 hybrid contribution 0.881 -0.589 -2.110 2.361 sum -3.508 3.160 -22.293 22.788 Atomic orbital electron populations 1.21489 0.94131 1.00436 1.00940 1.20908 0.97129 0.98371 0.92285 0.92459 1.19204 0.93618 0.94961 0.94517 1.22443 1.38029 1.10497 0.93311 0.92642 1.27450 0.94039 0.97254 1.05339 1.70922 1.38321 1.16082 1.32782 0.82947 0.77034 0.74533 0.71717 1.21162 1.19337 1.19258 1.21848 0.96463 0.97425 0.89405 1.60394 1.63508 1.06134 1.00440 1.22012 0.97575 0.98321 0.89399 1.21687 1.01864 0.95171 0.79337 1.48851 1.05078 1.46884 1.15638 1.23277 0.99934 0.98179 0.87681 1.21900 0.92516 1.13051 1.04185 1.24422 1.00102 0.98207 0.92514 1.77326 0.98822 1.21680 1.19111 0.90680 0.94756 0.94333 1.00192 0.99617 0.93764 0.96693 0.92004 0.83273 0.95872 0.91615 0.85121 0.89233 0.77514 0.81274 0.78170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.89 71.98 0.64 -3.56 16 2 C -0.07 -2.75 2.48 -10.79 -0.03 -2.78 16 3 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.01 0.77 3.76 29.85 0.11 0.88 16 5 C -0.60 -34.67 8.41 25.60 0.22 -34.46 16 6 H 0.06 3.06 7.06 -2.91 -0.02 3.04 16 7 C -0.04 -2.61 5.46 84.65 0.46 -2.15 16 8 N -0.94 -59.96 13.65 21.45 0.29 -59.66 16 9 Si 1.12 50.83 29.90 68.60 2.05 52.88 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 13 C 0.08 2.66 5.07 86.31 0.44 3.10 16 14 N -0.67 -17.46 5.96 -513.89 -3.06 -20.52 16 15 C 0.06 1.36 5.87 86.30 0.51 1.86 16 16 C 0.14 2.50 6.77 86.38 0.58 3.09 16 17 N -0.38 -7.96 3.68 -348.05 -1.28 -9.24 16 18 C 0.06 0.87 11.45 83.54 0.96 1.82 16 19 C -0.29 -4.60 10.80 21.99 0.24 -4.36 16 20 C 0.03 0.65 12.03 85.24 1.03 1.67 16 21 N -0.35 -8.87 12.42 -57.03 -0.71 -9.58 16 22 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 25 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 26 H -0.01 -0.82 8.00 -2.39 -0.02 -0.84 16 27 H 0.25 16.34 7.22 -92.71 -0.67 15.68 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.35 8.18 8.73 -89.69 -0.78 7.40 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.13 1.65 8.07 -2.38 -0.02 1.63 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -71.72 310.89 2.80 -68.92 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.35 Total: 12.08 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 5.15 Total: -34.88 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.76 Total: -99.00 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -71.72 2.80 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.040 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds