Wall clock time and date at job start Thu Apr 9 2020 12:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.50708 * 109.46876 * 240.00210 * 2 1 3 5 5 H 1.07999 * 120.00002 * 240.00334 * 4 2 1 6 6 C 1.37873 * 120.00015 * 60.00055 * 4 2 1 7 7 N 1.31519 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47039 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47583 * 119.99718 * 8 6 4 11 11 H 1.48501 * 109.47237 * 240.00325 * 8 6 4 12 12 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 13 13 C 1.46898 * 110.99673 * 274.99797 * 12 2 1 14 14 C 1.53006 * 109.47006 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.34678 * 126.58841 * 85.02401 * 16 15 14 18 18 N 1.34128 * 108.02002 * 179.97438 * 17 16 15 19 19 C 1.30505 * 109.25705 * 359.97438 * 18 17 16 20 20 N 1.35045 * 108.69961 * 359.77049 * 19 18 17 21 21 C 1.46500 * 126.40100 * 180.26815 * 20 19 18 22 22 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 23 23 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 24 24 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 25 25 H 0.96997 * 120.00033 * 179.97438 * 7 6 4 26 26 H 1.00895 * 111.00497 * 151.03719 * 12 2 1 27 27 H 1.09001 * 109.47062 * 59.99745 * 13 12 2 28 28 H 1.08993 * 109.47084 * 299.99192 * 13 12 2 29 29 H 1.09001 * 109.46801 * 300.00064 * 14 13 12 30 30 H 1.09001 * 109.46998 * 59.99660 * 14 13 12 31 31 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 32 32 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 33 33 H 1.07991 * 125.98886 * 359.96696 * 17 16 15 34 34 H 1.07995 * 125.65038 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46641 * 270.11955 * 21 20 19 36 36 H 1.08999 * 109.46856 * 30.11500 * 21 20 19 37 37 H 1.09000 * 109.47298 * 150.12339 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6040 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 6 2.5953 -0.5334 3.5744 15 6 2.6613 0.4198 4.7694 16 6 3.1669 -0.3245 5.9783 17 6 4.4548 -0.5395 6.3080 18 7 4.4790 -1.2386 7.4524 19 6 3.2550 -1.4646 7.8447 20 7 2.4054 -0.9063 6.9558 21 6 0.9421 -0.9226 7.0233 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7087 1.1614 -3.4844 26 1 2.9173 -1.1207 1.0286 27 1 1.0872 0.6162 2.5525 28 1 2.7591 1.0459 2.1182 29 1 1.9185 -1.3568 3.8029 30 1 3.5906 -0.9275 3.3689 31 1 3.3383 1.2428 4.5405 32 1 1.6662 0.8141 4.9749 33 1 5.3170 -0.2074 5.7489 34 1 2.9689 -2.0047 8.7351 35 1 0.5644 -1.8044 6.5056 36 1 0.6268 -0.9509 8.0663 37 1 0.5463 -0.0250 6.5481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:33 Heat of formation + Delta-G solvation = 46.628587 kcal Electronic energy + Delta-G solvation = -16299.746840 eV Core-core repulsion = 13691.577690 eV Total energy + Delta-G solvation = -2608.169150 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.11898 -36.49728 -34.41042 -33.87708 -32.15795 -29.66162 -27.58928 -27.09333 -25.32325 -24.32560 -21.50894 -21.18001 -20.01019 -19.58877 -17.08484 -16.48102 -15.77040 -15.38128 -14.81728 -14.54726 -13.97827 -13.59181 -13.50153 -13.22600 -13.02862 -12.83802 -12.64327 -11.98289 -11.80014 -11.55187 -11.03206 -10.88971 -10.69219 -10.55931 -10.19829 -10.11615 -10.01462 -9.86134 -9.62824 -8.82505 -8.48614 -8.32996 -7.27043 -6.03625 -4.09956 1.98474 2.69952 3.13933 3.28257 3.36113 3.40635 4.39415 4.51738 4.60045 4.64583 4.88329 4.97488 5.15106 5.18747 5.28572 5.33355 5.61085 5.65355 5.73807 5.85051 5.98820 6.14179 6.29968 6.53008 6.56038 6.72527 6.87008 7.11752 7.12172 7.22405 7.49795 7.77955 7.89061 8.02785 8.26523 8.38868 8.67685 9.01224 9.56251 11.02813 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048361 B = 0.003928 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.839730 B = 7125.897665 C = 7416.446480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.691 5.691 13 C 0.061 3.939 14 C -0.108 4.108 15 C -0.044 4.044 16 C -0.011 4.011 17 C -0.032 4.032 18 N -0.495 5.495 19 C 0.169 3.831 20 N -0.460 5.460 21 C 0.070 3.930 22 H 0.003 0.997 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.168 0.832 34 H 0.202 0.798 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -1.100 17.679 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.322 5.322 13 C -0.069 4.069 14 C -0.146 4.146 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.179 4.179 18 N -0.213 5.213 19 C -0.112 4.112 20 N -0.143 5.143 21 C -0.072 4.072 22 H 0.022 0.978 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.185 0.815 34 H 0.218 0.782 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.116 -1.490 18.123 18.184 hybrid contribution 0.191 0.335 -1.455 1.505 sum 0.076 -1.155 16.668 16.708 Atomic orbital electron populations 1.21707 0.97962 0.99258 0.99266 1.19116 0.92587 0.92350 0.85718 0.98176 1.21320 1.31338 1.12480 0.90483 0.92158 1.24928 0.95051 0.95009 0.99082 1.69909 1.36734 1.22974 1.23349 0.86465 0.78613 0.79640 0.82836 1.19727 1.20972 1.21076 1.60712 1.32111 1.33209 1.06136 1.21891 0.99504 0.94217 0.91324 1.21560 1.01816 0.98044 0.93217 1.20080 1.01328 0.97244 0.89650 1.21397 0.91915 1.04803 0.94469 1.22060 0.95367 1.04286 0.96202 1.70242 1.21018 1.17098 1.12930 1.24855 0.84884 1.03492 0.97993 1.45315 1.07660 1.41642 1.19706 1.22051 0.76824 1.04397 1.03954 0.97820 0.90126 0.95037 0.92994 0.85269 0.92073 0.96236 0.91765 0.91857 0.89599 0.91347 0.81501 0.78159 0.90262 0.89582 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 2 C 0.21 5.34 2.60 -68.86 -0.18 5.16 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.28 8.59 -34.44 -0.30 -14.58 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 N -0.69 -14.72 6.30 -107.94 -0.68 -15.40 16 13 C 0.06 1.05 5.48 -3.82 -0.02 1.03 16 14 C -0.11 -1.50 5.46 -26.73 -0.15 -1.65 16 15 C -0.04 -0.50 5.55 -27.89 -0.15 -0.66 16 16 C -0.01 -0.14 6.21 -81.60 -0.51 -0.64 16 17 C -0.03 -0.42 11.79 -17.81 -0.21 -0.63 16 18 N -0.49 -6.98 11.25 -14.66 -0.16 -7.14 16 19 C 0.17 1.87 12.56 -90.37 -1.14 0.73 16 20 N -0.46 -4.86 3.15 -121.36 -0.38 -5.24 16 21 C 0.07 0.48 11.00 59.85 0.66 1.13 16 22 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 23 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.33 6.92 8.22 -39.29 -0.32 6.59 16 27 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 28 H 0.02 0.34 8.05 -51.93 -0.42 -0.07 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.71 7.09 -51.93 -0.37 0.35 16 33 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.55 7.11 -51.93 -0.37 0.19 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -31.67 306.76 -8.63 -40.30 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.89 Total: 2.70 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.74 Total: -11.25 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.60 Total: -52.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.67 -8.63 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.928 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds