Wall clock time and date at job start Thu Apr 9 2020 12:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.50708 * 109.46876 * 240.00210 * 2 1 3 5 5 H 1.07999 * 120.00002 * 240.00334 * 4 2 1 6 6 C 1.37873 * 120.00015 * 60.00055 * 4 2 1 7 7 N 1.31519 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47039 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47583 * 119.99718 * 8 6 4 11 11 H 1.48501 * 109.47237 * 240.00325 * 8 6 4 12 12 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 13 13 C 1.46898 * 110.99673 * 274.99797 * 12 2 1 14 14 C 1.53006 * 109.47006 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.34678 * 126.58841 * 85.02401 * 16 15 14 18 18 N 1.34128 * 108.02002 * 179.97438 * 17 16 15 19 19 C 1.30505 * 109.25705 * 359.97438 * 18 17 16 20 20 N 1.35045 * 108.69961 * 359.77049 * 19 18 17 21 21 C 1.46500 * 126.40100 * 180.26815 * 20 19 18 22 22 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 23 23 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 24 24 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 25 25 H 0.96997 * 120.00033 * 179.97438 * 7 6 4 26 26 H 1.00895 * 111.00497 * 151.03719 * 12 2 1 27 27 H 1.09001 * 109.47062 * 59.99745 * 13 12 2 28 28 H 1.08993 * 109.47084 * 299.99192 * 13 12 2 29 29 H 1.09001 * 109.46801 * 300.00064 * 14 13 12 30 30 H 1.09001 * 109.46998 * 59.99660 * 14 13 12 31 31 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 32 32 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 33 33 H 1.07991 * 125.98886 * 359.96696 * 17 16 15 34 34 H 1.07995 * 125.65038 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46641 * 270.11955 * 21 20 19 36 36 H 1.08999 * 109.46856 * 30.11500 * 21 20 19 37 37 H 1.09000 * 109.47298 * 150.12339 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6040 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 6 2.5953 -0.5334 3.5744 15 6 2.6613 0.4198 4.7694 16 6 3.1669 -0.3245 5.9783 17 6 4.4548 -0.5395 6.3080 18 7 4.4790 -1.2386 7.4524 19 6 3.2550 -1.4646 7.8447 20 7 2.4054 -0.9063 6.9558 21 6 0.9421 -0.9226 7.0233 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7087 1.1614 -3.4844 26 1 2.9173 -1.1207 1.0286 27 1 1.0872 0.6162 2.5525 28 1 2.7591 1.0459 2.1182 29 1 1.9185 -1.3568 3.8029 30 1 3.5906 -0.9275 3.3689 31 1 3.3383 1.2428 4.5405 32 1 1.6662 0.8141 4.9749 33 1 5.3170 -0.2074 5.7489 34 1 2.9689 -2.0047 8.7351 35 1 0.5644 -1.8044 6.5056 36 1 0.6268 -0.9509 8.0663 37 1 0.5463 -0.0250 6.5481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:32 Heat of formation + Delta-G solvation = 27.320579 kcal Electronic energy + Delta-G solvation = -16300.584098 eV Core-core repulsion = 13691.577690 eV Total energy + Delta-G solvation = -2609.006408 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.97394 -38.12564 -35.79524 -34.82703 -33.87269 -31.15020 -29.01995 -27.75218 -27.34100 -25.67965 -22.59902 -22.27626 -21.73763 -20.65928 -18.51578 -17.85873 -16.97812 -16.53861 -16.45408 -15.74265 -15.47277 -14.95581 -14.66120 -14.44889 -14.09889 -13.78767 -13.57607 -13.43666 -13.23493 -13.03680 -12.83122 -12.60037 -12.37603 -12.20983 -12.14096 -11.72594 -11.62635 -10.90411 -10.85873 -10.58039 -10.45742 -9.25692 -9.04697 -8.14056 -6.28169 1.12034 1.41209 1.43072 1.54897 1.97986 2.21493 2.41456 3.14554 3.54409 3.81582 3.93271 3.99094 4.07508 4.30427 4.41346 4.47575 4.53219 4.63561 4.72891 4.76370 4.84177 4.89208 4.90354 5.07979 5.18779 5.22836 5.31860 5.50041 5.52058 5.67642 5.82087 5.86932 6.22722 6.35689 6.47695 6.79036 7.00203 7.14983 7.42550 8.91802 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048361 B = 0.003928 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.839730 B = 7125.897665 C = 7416.446480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.212 3.788 3 H -0.030 1.030 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.691 5.691 13 C 0.063 3.937 14 C -0.091 4.091 15 C -0.034 4.034 16 C -0.019 4.019 17 C -0.056 4.056 18 N -0.537 5.537 19 C 0.175 3.825 20 N -0.460 5.460 21 C 0.063 3.937 22 H 0.024 0.976 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.263 0.737 26 H 0.331 0.669 27 H 0.062 0.938 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.169 0.831 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -1.743 18.630 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H -0.012 1.012 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.321 5.321 13 C -0.067 4.067 14 C -0.130 4.130 15 C -0.073 4.073 16 C -0.135 4.135 17 C -0.203 4.203 18 N -0.256 5.256 19 C -0.107 4.107 20 N -0.142 5.142 21 C -0.078 4.078 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.621 -2.133 19.090 19.219 hybrid contribution 0.320 0.539 -1.673 1.787 sum -0.301 -1.594 17.417 17.492 Atomic orbital electron populations 1.21530 0.97638 0.98804 0.99105 1.18945 0.92852 0.90811 0.87003 1.01234 1.21644 1.31651 1.12678 0.91741 0.92372 1.25734 0.95161 0.95689 1.02051 1.70027 1.37476 1.24084 1.24136 0.85438 0.78133 0.78598 0.79032 1.19150 1.20513 1.20570 1.60644 1.32217 1.33623 1.05630 1.21951 0.99737 0.93897 0.91098 1.21361 1.01079 0.97940 0.92579 1.19956 1.02376 0.96601 0.88324 1.21391 0.91854 1.05199 0.95043 1.22276 0.96260 1.05081 0.96695 1.70208 1.23053 1.18599 1.13741 1.25583 0.84229 1.02332 0.98537 1.45554 1.09093 1.40700 1.18887 1.22348 0.74478 1.04795 1.06170 0.95712 0.92517 0.95435 0.92813 0.85178 0.91952 0.96567 0.92145 0.92347 0.89056 0.89849 0.81411 0.74565 0.89879 0.86633 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.60 9.19 71.98 0.66 -4.94 16 2 C 0.21 10.90 2.60 44.17 0.11 11.01 16 3 H -0.03 -1.69 7.80 -2.39 -0.02 -1.71 16 4 C -0.54 -29.85 8.59 25.60 0.22 -29.63 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.69 -29.19 6.30 -495.43 -3.12 -32.32 16 13 C 0.06 2.12 5.48 86.31 0.47 2.59 16 14 C -0.09 -2.42 5.46 30.60 0.17 -2.26 16 15 C -0.03 -0.72 5.55 29.85 0.17 -0.55 16 16 C -0.02 -0.44 6.21 40.95 0.25 -0.19 16 17 C -0.06 -1.48 11.79 83.53 0.98 -0.50 16 18 N -0.54 -14.72 11.25 -200.31 -2.25 -16.97 16 19 C 0.18 3.50 12.56 180.26 2.26 5.76 16 20 N -0.46 -8.67 3.15 -537.88 -1.70 -10.37 16 21 C 0.06 0.66 11.00 127.77 1.41 2.07 16 22 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16 23 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.33 13.82 8.22 -89.70 -0.74 13.09 16 27 H 0.06 2.09 7.44 -2.39 -0.02 2.07 16 28 H 0.02 0.56 8.05 -2.39 -0.02 0.54 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.54 7.09 -2.39 -0.02 1.52 16 33 H 0.17 4.09 8.06 -2.92 -0.02 4.07 16 34 H 0.24 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.90 7.11 -2.39 -0.02 0.88 16 Total: -1.00 -67.74 306.76 2.66 -65.08 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.31 Total: 17.15 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 7.16 Total: -15.48 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -6.83 Total: -112.33 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.74 2.66 -65.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.399 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds