Wall clock time and date at job start Thu Apr 9 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 H 1.09002 * 109.47429 * 54.99884 * 3 2 1 5 5 C 1.50699 * 109.47136 * 174.99692 * 3 2 1 6 6 H 1.07998 * 120.00136 * 114.75184 * 5 3 2 7 7 C 1.37880 * 120.00147 * 294.47849 * 5 3 2 8 8 N 1.31516 * 120.00021 * 0.27357 * 7 5 3 9 9 Si 1.86805 * 119.99996 * 180.27201 * 7 5 3 10 10 H 1.48506 * 109.46798 * 60.00091 * 9 7 5 11 11 H 1.48495 * 109.46962 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47253 * 300.00005 * 9 7 5 13 13 N 1.46096 * 109.47517 * 294.99633 * 3 2 1 14 14 C 1.46121 * 113.02460 * 305.35363 * 13 3 2 15 15 C 1.52116 * 111.31481 * 292.25972 * 14 13 3 16 16 C 1.52085 * 112.80096 * 307.70185 * 15 14 13 17 17 C 1.52080 * 112.88958 * 44.42186 * 16 15 14 18 18 C 1.46120 * 113.02520 * 178.03270 * 13 3 2 19 19 C 1.52584 * 109.83927 * 191.40583 * 18 13 3 20 20 C 1.52285 * 112.00432 * 305.56544 * 19 18 13 21 21 C 1.52281 * 112.34101 * 47.23644 * 20 19 18 22 22 H 1.08998 * 109.46705 * 60.00382 * 1 2 3 23 23 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47227 * 300.00027 * 1 2 3 25 25 H 1.09007 * 109.47308 * 240.00027 * 2 1 3 26 26 H 1.09007 * 109.47031 * 120.00109 * 2 1 3 27 27 H 0.96992 * 119.99864 * 180.02562 * 8 7 5 28 28 H 1.10119 * 108.02077 * 51.03994 * 14 13 3 29 29 H 1.10028 * 108.65923 * 186.97669 * 15 14 13 30 30 H 1.09504 * 109.81534 * 70.31494 * 15 14 13 31 31 H 1.08855 * 110.89943 * 279.28362 * 16 15 14 32 32 H 1.10697 * 107.91205 * 163.59014 * 16 15 14 33 33 H 1.10029 * 108.79713 * 194.90856 * 17 16 15 34 34 H 1.09497 * 109.63964 * 78.26413 * 17 16 15 35 35 H 1.10125 * 108.02068 * 308.95267 * 18 13 3 36 36 H 1.09534 * 109.01491 * 66.65916 * 19 18 13 37 37 H 1.09513 * 109.07473 * 184.32483 * 19 18 13 38 38 H 1.08676 * 110.83158 * 282.62675 * 20 19 18 39 39 H 1.10512 * 108.07991 * 166.39006 * 20 19 18 40 40 H 1.09513 * 109.39395 * 191.68026 * 21 20 19 41 41 H 1.09537 * 109.29887 * 73.65117 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1503 1.8117 -0.6892 7 6 4.1390 0.9822 1.2776 8 7 3.3981 0.5348 2.2678 9 14 6.0005 0.9916 1.4341 10 1 6.5011 2.3836 1.3037 11 1 6.3884 0.4487 2.7607 12 1 6.5916 0.1505 0.3625 13 7 1.6536 2.0957 -1.2484 14 6 2.0918 1.3648 -2.4353 15 6 3.6070 1.3846 -2.5688 16 6 4.1864 2.7891 -2.5002 17 6 3.5776 3.6263 -1.3861 18 6 2.0639 3.4967 -1.3111 19 6 1.3903 4.1810 -2.4970 20 6 1.6489 3.4430 -3.8038 21 6 1.4189 1.9430 -3.6768 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8182 0.2101 3.0794 28 1 1.7676 0.3177 -2.3296 29 1 3.8811 0.9347 -3.5348 30 1 4.0566 0.7625 -1.7878 31 1 4.0944 3.2944 -3.4600 32 1 5.2723 2.7002 -2.3049 33 1 3.8325 4.6830 -1.5569 34 1 4.0224 3.3417 -0.4269 35 1 1.7193 3.9942 -0.3910 36 1 0.3112 4.2289 -2.3156 37 1 1.7650 5.2068 -2.5784 38 1 2.6495 3.6509 -4.1735 39 1 0.9479 3.8344 -4.5632 40 1 1.8128 1.4383 -4.5653 41 1 0.3429 1.7449 -3.6245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707101870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:55 Heat of formation + Delta-G solvation = 10.358677 kcal Electronic energy + Delta-G solvation = -19234.188461 eV Core-core repulsion = 16727.986873 eV Total energy + Delta-G solvation = -2506.201588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07611 -34.73919 -32.59253 -31.96035 -31.76053 -30.11570 -26.67991 -25.38706 -24.01693 -22.48806 -21.16535 -20.34307 -19.33035 -17.29545 -16.52886 -15.27627 -14.44172 -14.25593 -13.99630 -13.55916 -12.97774 -12.95595 -12.75744 -12.56772 -12.43710 -11.97264 -11.43614 -11.13994 -11.05922 -10.96038 -10.90795 -10.59406 -10.41362 -10.29848 -10.11178 -10.10394 -9.83358 -9.57876 -9.39160 -9.22125 -8.95196 -8.27387 -8.09841 -6.90307 -5.92136 -3.98722 3.28741 3.34649 3.37356 4.43428 5.05468 5.31025 5.32167 5.48129 5.49342 5.68864 5.84652 5.88736 5.93484 6.03033 6.11593 6.33966 6.36693 6.40418 6.45917 6.49187 6.56042 6.56428 6.61963 6.65632 6.67667 6.74255 6.92662 7.00326 7.06632 7.12607 7.22194 7.26637 7.40160 7.49793 7.73476 7.81160 8.07928 8.35563 8.51546 8.64230 9.10480 9.63751 11.08248 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.012072 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.485819 B = 2318.822686 C = 2896.077423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.223 3.777 4 H 0.040 0.960 5 C -0.562 4.562 6 H 0.102 0.898 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.535 5.535 14 C 0.103 3.897 15 C -0.151 4.151 16 C -0.097 4.097 17 C -0.153 4.153 18 C 0.112 3.888 19 C -0.104 4.104 20 C -0.109 4.109 21 C -0.104 4.104 22 H 0.048 0.952 23 H 0.024 0.976 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.259 0.741 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 3.369 -8.642 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.117 3.883 4 H 0.058 0.942 5 C -0.600 4.600 6 H 0.119 0.881 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.006 4.006 15 C -0.189 4.189 16 C -0.134 4.134 17 C -0.191 4.191 18 C 0.003 3.997 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.142 4.142 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.785 3.281 -8.434 9.469 hybrid contribution 2.051 -0.017 0.205 2.061 sum -0.735 3.264 -8.228 8.883 Atomic orbital electron populations 1.21722 0.98843 0.98353 1.00731 1.21623 0.92321 0.99548 1.01300 1.19015 0.93190 0.90537 0.85531 0.94219 1.22961 0.93721 1.41303 1.02063 0.88059 1.24973 0.97077 0.95514 0.96111 1.69920 1.34671 1.42392 1.05616 0.86931 0.87180 0.78354 0.77234 1.20364 1.21455 1.20377 1.60744 1.60980 1.00886 1.03141 1.20987 0.91867 0.97891 0.89870 1.22230 0.98175 0.97134 1.01388 1.21092 0.98481 0.96153 0.97703 1.22289 0.97965 0.97070 1.01788 1.20832 0.92212 0.90304 0.96386 1.21402 1.00334 0.97546 0.94879 1.21285 1.00804 0.95784 0.96778 1.21403 1.00371 0.95072 0.97326 0.93309 0.95720 0.94122 0.94621 0.90007 0.93128 0.90975 0.95076 0.88105 0.93527 0.94673 0.95177 0.87556 0.91973 0.92583 0.93189 0.92298 0.94357 0.93253 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.80 37.16 0.36 -2.42 16 2 C -0.11 -2.51 4.95 -26.73 -0.13 -2.64 16 3 C 0.22 5.27 1.72 -69.30 -0.12 5.15 16 4 H 0.04 1.07 8.12 -51.93 -0.42 0.65 16 5 C -0.56 -13.95 4.36 -34.44 -0.15 -14.10 16 6 H 0.10 2.41 1.97 -52.49 -0.10 2.31 16 7 C 0.07 1.72 5.31 -17.82 -0.09 1.62 16 8 N -0.89 -24.53 11.71 55.43 0.65 -23.88 16 9 Si 0.87 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.53 -10.89 3.77 -214.65 -0.81 -11.70 16 14 C 0.10 1.93 2.32 -68.80 -0.16 1.77 16 15 C -0.15 -2.87 4.59 -27.65 -0.13 -3.00 16 16 C -0.10 -1.77 4.32 -27.67 -0.12 -1.89 16 17 C -0.15 -2.94 4.59 -27.65 -0.13 -3.07 16 18 C 0.11 2.14 2.55 -68.80 -0.18 1.96 16 19 C -0.10 -1.66 5.50 -27.31 -0.15 -1.81 16 20 C -0.11 -1.64 5.16 -27.46 -0.14 -1.78 16 21 C -0.10 -1.66 5.50 -27.31 -0.15 -1.81 16 22 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.80 5.97 -51.93 -0.31 0.49 16 26 H 0.08 2.11 6.42 -51.93 -0.33 1.78 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.07 1.43 5.75 -51.29 -0.29 1.13 16 29 H 0.03 0.53 8.17 -51.34 -0.42 0.11 16 30 H 0.10 2.22 5.40 -51.64 -0.28 1.94 16 31 H 0.05 0.77 5.76 -52.01 -0.30 0.47 16 32 H 0.03 0.65 8.28 -50.96 -0.42 0.22 16 33 H 0.03 0.52 8.17 -51.34 -0.42 0.11 16 34 H 0.11 2.39 5.24 -51.65 -0.27 2.11 16 35 H 0.06 1.26 8.16 -51.29 -0.42 0.84 16 36 H 0.06 0.89 8.19 -51.63 -0.42 0.46 16 37 H 0.05 0.73 8.14 -51.64 -0.42 0.31 16 38 H 0.06 0.88 5.60 -52.11 -0.29 0.59 16 39 H 0.04 0.51 8.27 -51.06 -0.42 0.09 16 40 H 0.05 0.72 8.14 -51.64 -0.42 0.30 16 41 H 0.06 0.88 8.19 -51.62 -0.42 0.46 16 LS Contribution 283.26 15.07 4.27 4.27 Total: -1.00 -25.55 283.26 -8.97 -34.52 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.77 Total: 3.20 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.28 Total: -22.02 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.16 Total: -35.58 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -25.55 -8.97 -34.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707101870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.881 kcal (2) G-P(sol) polarization free energy of solvation -25.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds