Wall clock time and date at job start Thu Apr 9 2020 12:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 H 1.09002 * 109.47429 * 54.99884 * 3 2 1 5 5 C 1.50699 * 109.47136 * 174.99692 * 3 2 1 6 6 H 1.07998 * 120.00136 * 114.75184 * 5 3 2 7 7 C 1.37880 * 120.00147 * 294.47849 * 5 3 2 8 8 N 1.31516 * 120.00021 * 0.27357 * 7 5 3 9 9 Si 1.86805 * 119.99996 * 180.27201 * 7 5 3 10 10 H 1.48506 * 109.46798 * 60.00091 * 9 7 5 11 11 H 1.48495 * 109.46962 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47253 * 300.00005 * 9 7 5 13 13 N 1.46096 * 109.47517 * 294.99633 * 3 2 1 14 14 C 1.46121 * 113.02460 * 305.35363 * 13 3 2 15 15 C 1.52116 * 111.31481 * 292.25972 * 14 13 3 16 16 C 1.52085 * 112.80096 * 307.70185 * 15 14 13 17 17 C 1.52080 * 112.88958 * 44.42186 * 16 15 14 18 18 C 1.46120 * 113.02520 * 178.03270 * 13 3 2 19 19 C 1.52584 * 109.83927 * 191.40583 * 18 13 3 20 20 C 1.52285 * 112.00432 * 305.56544 * 19 18 13 21 21 C 1.52281 * 112.34101 * 47.23644 * 20 19 18 22 22 H 1.08998 * 109.46705 * 60.00382 * 1 2 3 23 23 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47227 * 300.00027 * 1 2 3 25 25 H 1.09007 * 109.47308 * 240.00027 * 2 1 3 26 26 H 1.09007 * 109.47031 * 120.00109 * 2 1 3 27 27 H 0.96992 * 119.99864 * 180.02562 * 8 7 5 28 28 H 1.10119 * 108.02077 * 51.03994 * 14 13 3 29 29 H 1.10028 * 108.65923 * 186.97669 * 15 14 13 30 30 H 1.09504 * 109.81534 * 70.31494 * 15 14 13 31 31 H 1.08855 * 110.89943 * 279.28362 * 16 15 14 32 32 H 1.10697 * 107.91205 * 163.59014 * 16 15 14 33 33 H 1.10029 * 108.79713 * 194.90856 * 17 16 15 34 34 H 1.09497 * 109.63964 * 78.26413 * 17 16 15 35 35 H 1.10125 * 108.02068 * 308.95267 * 18 13 3 36 36 H 1.09534 * 109.01491 * 66.65916 * 19 18 13 37 37 H 1.09513 * 109.07473 * 184.32483 * 19 18 13 38 38 H 1.08676 * 110.83158 * 282.62675 * 20 19 18 39 39 H 1.10512 * 108.07991 * 166.39006 * 20 19 18 40 40 H 1.09513 * 109.39395 * 191.68026 * 21 20 19 41 41 H 1.09537 * 109.29887 * 73.65117 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1503 1.8117 -0.6892 7 6 4.1390 0.9822 1.2776 8 7 3.3981 0.5348 2.2678 9 14 6.0005 0.9916 1.4341 10 1 6.5011 2.3836 1.3037 11 1 6.3884 0.4487 2.7607 12 1 6.5916 0.1505 0.3625 13 7 1.6536 2.0957 -1.2484 14 6 2.0918 1.3648 -2.4353 15 6 3.6070 1.3846 -2.5688 16 6 4.1864 2.7891 -2.5002 17 6 3.5776 3.6263 -1.3861 18 6 2.0639 3.4967 -1.3111 19 6 1.3903 4.1810 -2.4970 20 6 1.6489 3.4430 -3.8038 21 6 1.4189 1.9430 -3.6768 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8182 0.2101 3.0794 28 1 1.7676 0.3177 -2.3296 29 1 3.8811 0.9347 -3.5348 30 1 4.0566 0.7625 -1.7878 31 1 4.0944 3.2944 -3.4600 32 1 5.2723 2.7002 -2.3049 33 1 3.8325 4.6830 -1.5569 34 1 4.0224 3.3417 -0.4269 35 1 1.7193 3.9942 -0.3910 36 1 0.3112 4.2289 -2.3156 37 1 1.7650 5.2068 -2.5784 38 1 2.6495 3.6509 -4.1735 39 1 0.9479 3.8344 -4.5632 40 1 1.8128 1.4383 -4.5653 41 1 0.3429 1.7449 -3.6245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707101870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:54 Heat of formation + Delta-G solvation = -2.935553 kcal Electronic energy + Delta-G solvation = -19234.764942 eV Core-core repulsion = 16727.986873 eV Total energy + Delta-G solvation = -2506.778069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62481 -36.44165 -34.16841 -33.64605 -33.31738 -31.75579 -28.51614 -26.78158 -25.65473 -24.22543 -22.70927 -21.80756 -21.00673 -18.95782 -18.28137 -16.88114 -16.29291 -15.80473 -15.48831 -15.17101 -14.69928 -14.51680 -14.12038 -14.09933 -13.99232 -13.59787 -13.15393 -12.90690 -12.86790 -12.54408 -12.43129 -12.27266 -12.09704 -11.78597 -11.63451 -11.59572 -11.53012 -11.31423 -10.92676 -10.79402 -10.59491 -10.27075 -9.80422 -8.62541 -7.89657 -6.03441 1.37470 1.39695 1.44137 2.45755 3.27638 3.52237 3.94023 4.08518 4.20823 4.25484 4.43088 4.51367 4.55389 4.59519 4.63484 4.75278 4.75743 4.91469 4.92345 5.04448 5.13503 5.22471 5.23176 5.27770 5.30544 5.31561 5.36297 5.43647 5.47036 5.52394 5.63985 5.64835 5.66858 5.79264 5.88774 5.95942 6.14800 6.43815 6.67976 6.98642 7.17211 7.61771 9.05403 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.012072 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.485819 B = 2318.822686 C = 2896.077423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.230 3.770 4 H -0.004 1.004 5 C -0.551 4.551 6 H 0.114 0.886 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.926 3.074 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.273 1.273 13 N -0.536 5.536 14 C 0.100 3.900 15 C -0.149 4.149 16 C -0.095 4.095 17 C -0.150 4.150 18 C 0.107 3.893 19 C -0.097 4.097 20 C -0.109 4.109 21 C -0.099 4.099 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.253 0.747 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 4.281 -11.691 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.123 3.877 4 H 0.014 0.986 5 C -0.590 4.590 6 H 0.132 0.868 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.753 3.247 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.199 1.199 13 N -0.258 5.258 14 C -0.008 4.008 15 C -0.188 4.188 16 C -0.132 4.132 17 C -0.189 4.189 18 C -0.002 4.002 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.137 4.137 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.848 4.203 -11.506 12.577 hybrid contribution 2.046 -0.269 1.129 2.353 sum -0.801 3.934 -10.377 11.127 Atomic orbital electron populations 1.21578 0.96492 0.99664 1.00648 1.21454 0.94386 0.98634 0.99711 1.18744 0.92302 0.90663 0.86018 0.98639 1.23400 0.94728 1.39050 1.01833 0.86843 1.25611 1.00340 0.96174 0.96342 1.70066 1.35818 1.44363 1.06044 0.86107 0.83444 0.78302 0.76826 1.19998 1.22019 1.19854 1.60675 1.61044 1.01632 1.02440 1.21089 0.92027 0.97298 0.90430 1.22123 0.98172 0.97237 1.01296 1.21087 0.97901 0.95622 0.98597 1.22155 0.97885 0.98574 1.00268 1.20940 0.92468 0.89515 0.97281 1.21343 1.00063 0.98259 0.93869 1.21270 1.02071 0.94735 0.96516 1.21365 1.00265 0.95986 0.96094 0.92248 0.93695 0.95198 0.94272 0.93383 0.93760 0.92346 0.92643 0.91838 0.90485 0.95088 0.93076 0.91590 0.94452 0.92424 0.91263 0.91580 0.91611 0.91066 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.80 71.98 0.71 -4.35 16 2 C -0.10 -4.86 4.95 30.59 0.15 -4.71 16 3 C 0.23 11.20 1.72 44.32 0.08 11.28 16 4 H 0.00 -0.25 8.12 -2.39 -0.02 -0.27 16 5 C -0.55 -28.18 4.36 25.60 0.11 -28.07 16 6 H 0.11 5.46 1.97 -2.91 -0.01 5.45 16 7 C 0.01 0.72 5.31 84.66 0.45 1.17 16 8 N -0.92 -53.45 11.71 21.45 0.25 -53.20 16 9 Si 0.93 43.50 29.54 68.60 2.03 45.52 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.54 -21.58 3.77 -833.02 -3.14 -24.73 16 14 C 0.10 3.57 2.32 44.64 0.10 3.67 16 15 C -0.15 -5.40 4.59 30.00 0.14 -5.26 16 16 C -0.09 -3.21 4.32 29.99 0.13 -3.08 16 17 C -0.15 -5.60 4.59 30.00 0.14 -5.46 16 18 C 0.11 3.99 2.55 44.63 0.11 4.10 16 19 C -0.10 -2.79 5.50 30.22 0.17 -2.63 16 20 C -0.11 -2.73 5.16 30.12 0.16 -2.57 16 21 C -0.10 -2.76 5.50 30.22 0.17 -2.59 16 22 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.78 5.97 -2.38 -0.01 1.76 16 26 H 0.05 2.58 6.42 -2.38 -0.02 2.57 16 27 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.06 2.23 5.75 -1.79 -0.01 2.22 16 29 H 0.05 1.73 8.17 -1.84 -0.02 1.71 16 30 H 0.06 2.77 5.40 -2.12 -0.01 2.75 16 31 H 0.08 2.19 5.76 -2.46 -0.01 2.17 16 32 H 0.03 1.07 8.28 -1.47 -0.01 1.05 16 33 H 0.05 1.67 8.17 -1.84 -0.01 1.66 16 34 H 0.07 2.99 5.24 -2.12 -0.01 2.97 16 35 H 0.04 1.54 8.16 -1.78 -0.01 1.53 16 36 H 0.06 1.64 8.19 -2.10 -0.02 1.63 16 37 H 0.07 1.74 8.14 -2.11 -0.02 1.72 16 38 H 0.07 1.59 5.60 -2.56 -0.01 1.57 16 39 H 0.07 1.37 8.27 -1.57 -0.01 1.36 16 40 H 0.07 1.71 8.14 -2.11 -0.02 1.69 16 41 H 0.06 1.62 8.19 -2.10 -0.02 1.60 16 Total: -1.00 -56.94 283.26 2.78 -54.16 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.04 Total: 16.73 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 2.60 Total: -38.49 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.89 Total: -77.92 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -56.94 2.78 -54.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707101870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.229 kcal (2) G-P(sol) polarization free energy of solvation -56.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds