Wall clock time and date at job start Thu Apr 9 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 H 1.09004 * 115.54928 * 29.33194 * 3 2 1 5 5 C 1.52999 * 117.50020 * 243.61916 * 3 2 1 6 6 C 1.52998 * 60.00125 * 252.51102 * 5 3 2 7 7 H 1.09000 * 117.51736 * 107.47987 * 6 5 3 8 8 C 1.53001 * 117.49898 * 252.51216 * 6 5 3 9 9 N 1.46899 * 109.46846 * 243.46515 * 8 6 5 10 10 C 1.46844 * 111.00426 * 292.30584 * 9 8 6 11 11 C 1.53038 * 109.52348 * 185.83873 * 10 9 8 12 12 C 1.53113 * 109.28120 * 300.82111 * 11 10 9 13 13 C 1.50696 * 109.52654 * 177.55973 * 12 11 10 14 14 H 1.08007 * 119.99878 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00291 * 179.72182 * 13 12 11 16 16 N 1.31509 * 119.99937 * 180.27265 * 15 13 12 17 17 Si 1.86793 * 119.99847 * 0.28140 * 15 13 12 18 18 H 1.48498 * 109.47585 * 89.99789 * 17 15 13 19 19 H 1.48504 * 109.47250 * 209.99669 * 17 15 13 20 20 H 1.48498 * 109.47270 * 329.99179 * 17 15 13 21 21 C 1.53117 * 109.15847 * 57.65469 * 12 11 10 22 22 C 1.46843 * 110.99982 * 56.52113 * 9 8 6 23 23 H 1.08998 * 109.47302 * 300.00231 * 1 2 3 24 24 H 1.09007 * 109.47203 * 60.00139 * 1 2 3 25 25 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47302 * 239.99769 * 2 1 3 27 27 H 1.08999 * 109.47108 * 120.00214 * 2 1 3 28 28 H 1.08997 * 117.49641 * 145.01940 * 5 3 2 29 29 H 1.09001 * 117.49544 * 0.02562 * 5 3 2 30 30 H 1.09004 * 109.46918 * 123.46826 * 8 6 5 31 31 H 1.08997 * 109.47136 * 3.46575 * 8 6 5 32 32 H 1.09003 * 109.46295 * 65.82475 * 10 9 8 33 33 H 1.09004 * 109.46224 * 305.85736 * 10 9 8 34 34 H 1.09001 * 109.50247 * 180.87857 * 11 10 9 35 35 H 1.08996 * 109.50141 * 60.76800 * 11 10 9 36 36 H 1.09006 * 109.52025 * 297.68843 * 12 11 10 37 37 H 0.97002 * 120.00185 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.50551 * 62.28880 * 21 12 11 39 39 H 1.09009 * 109.50356 * 182.40452 * 21 12 11 40 40 H 1.09010 * 109.46138 * 294.17434 * 22 9 8 41 41 H 1.09002 * 109.46887 * 54.13890 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7719 0.1966 8 6 4.0300 2.8804 0.9033 9 7 5.4947 2.8491 1.0109 10 6 5.9364 1.7358 1.8604 11 6 7.4503 1.8203 2.0679 12 6 8.1513 1.7584 0.7081 13 6 9.6389 1.9013 0.9013 14 1 10.0452 2.0237 1.8945 15 6 10.4820 1.8696 -0.1893 16 7 11.7807 1.9890 -0.0201 17 14 9.7794 1.6573 -1.9070 18 1 9.4821 2.9910 -2.4885 19 1 10.7682 0.9535 -2.7627 20 1 8.5296 0.8586 -1.8354 21 6 7.6379 2.8996 -0.1743 22 6 6.1186 2.7839 -0.3168 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.7213 2.9427 -1.5343 29 1 3.0092 1.1859 -2.0158 30 1 3.5920 2.8661 1.9014 31 1 3.7230 3.7886 0.3847 32 1 5.6882 0.7903 1.3782 33 1 5.4337 1.7940 2.8258 34 1 7.7801 0.9849 2.6857 35 1 7.6980 2.7594 2.5627 36 1 7.9361 0.8024 0.2306 37 1 12.3738 1.9670 -0.7873 38 1 7.8885 3.8558 0.2851 39 1 8.1017 2.8355 -1.1587 40 1 5.8694 1.8335 -0.7889 41 1 5.7482 3.6033 -0.9329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723121778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:44 Heat of formation + Delta-G solvation = 9.154967 kcal Electronic energy + Delta-G solvation = -17431.709532 eV Core-core repulsion = 14925.455747 eV Total energy + Delta-G solvation = -2506.253785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.25795 -37.38325 -34.00161 -32.26711 -31.28806 -30.15945 -27.23235 -24.48846 -23.86906 -22.54247 -21.74101 -20.61476 -20.37230 -18.46569 -16.65539 -15.88545 -15.07653 -14.94330 -14.59129 -14.36211 -13.89744 -13.33961 -13.21998 -12.87214 -12.74693 -12.34229 -12.26236 -11.85845 -11.75890 -11.53135 -11.45421 -11.25500 -11.17863 -10.83569 -10.50807 -10.08596 -10.01047 -9.86544 -9.69869 -9.53586 -9.01079 -8.87963 -8.47546 -7.84818 -6.02312 -4.00249 3.29938 3.39801 3.42152 3.67199 4.35331 4.45304 4.48333 4.76769 4.88078 5.01380 5.16741 5.25221 5.28854 5.37482 5.53142 5.57456 5.62952 5.74270 5.77537 5.78925 5.81320 5.90229 5.94652 5.99474 6.02274 6.15320 6.18946 6.24287 6.33699 6.43775 6.50816 6.79463 6.90097 6.99838 7.28068 7.49193 7.59747 7.70423 7.84464 8.59149 9.02572 9.61059 11.11346 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036703 B = 0.005666 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.695909 B = 4940.458746 C = 5235.121558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.148 4.148 4 H 0.102 0.898 5 C -0.173 4.173 6 C -0.182 4.182 7 H 0.104 0.896 8 C 0.086 3.914 9 N -0.529 5.529 10 C 0.055 3.945 11 C -0.097 4.097 12 C 0.013 3.987 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.268 1.268 21 C -0.117 4.117 22 C 0.058 3.942 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.028 0.972 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.465 -1.269 -0.719 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.167 4.167 4 H 0.120 0.880 5 C -0.210 4.210 6 C -0.202 4.202 7 H 0.122 0.878 8 C -0.043 4.043 9 N -0.252 5.252 10 C -0.072 4.072 11 C -0.135 4.135 12 C -0.005 4.005 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.155 4.155 22 C -0.070 4.070 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.111 -0.820 -0.573 20.136 hybrid contribution -0.479 -0.843 -1.529 1.811 sum -20.590 -1.664 -2.102 20.764 Atomic orbital electron populations 1.21736 0.95614 1.01393 1.01772 1.21115 0.95765 0.94443 1.01903 1.22414 0.93718 0.97753 1.02782 0.87957 1.23150 1.04383 1.02022 0.91484 1.23286 0.94561 1.02100 1.00274 0.87789 1.21844 0.88512 0.94814 0.99124 1.62177 1.04745 1.44509 1.13725 1.22196 0.97973 0.91225 0.95840 1.21500 0.91292 1.01439 0.99246 1.19172 0.95979 0.93435 0.91962 1.21083 0.88814 1.49502 0.95300 0.90890 1.25021 0.94690 0.94641 0.98950 1.69904 1.02611 1.51000 1.30755 0.86847 0.78388 0.78112 0.84876 1.20572 1.22649 1.19275 1.22025 0.91480 1.02154 0.99835 1.22135 0.96630 0.99181 0.89007 0.92729 0.92747 0.92880 0.92074 0.91746 0.88974 0.89258 0.90838 0.91055 0.95510 0.91958 0.92495 0.91848 0.96178 0.92784 0.91369 0.93531 0.95343 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.87 37.16 0.37 -0.80 16 2 C -0.09 -0.89 6.22 -26.73 -0.17 -1.06 16 3 C -0.15 -1.52 5.46 -90.62 -0.49 -2.02 16 4 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 5 C -0.17 -1.94 9.82 -26.73 -0.26 -2.20 16 6 C -0.18 -2.27 3.95 -90.62 -0.36 -2.63 16 7 H 0.10 1.48 6.32 -51.93 -0.33 1.15 16 8 C 0.09 1.14 5.65 -3.82 -0.02 1.11 16 9 N -0.53 -8.83 4.86 -234.67 -1.14 -9.97 16 10 C 0.06 0.94 5.17 -3.84 -0.02 0.92 16 11 C -0.10 -1.97 5.32 -26.65 -0.14 -2.11 16 12 C 0.01 0.32 1.75 -91.65 -0.16 0.16 16 13 C -0.51 -14.51 9.14 -34.44 -0.31 -14.82 16 14 H 0.07 2.24 7.99 -52.48 -0.42 1.83 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 17 Si 0.89 22.39 24.37 -169.99 -4.14 18.25 16 18 H -0.28 -6.84 6.90 56.52 0.39 -6.45 16 19 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.27 -6.50 6.52 56.52 0.37 -6.13 16 21 C -0.12 -2.59 4.84 -26.65 -0.13 -2.72 16 22 C 0.06 1.06 5.00 -3.84 -0.02 1.04 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 29 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 30 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 31 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 32 H 0.03 0.45 6.61 -51.93 -0.34 0.11 16 33 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.05 1.08 3.40 -51.92 -0.18 0.91 16 40 H 0.03 0.53 7.06 -51.92 -0.37 0.16 16 41 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -29.80 309.29 -9.14 -38.94 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.47 Total: -1.29 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.82 Total: -23.25 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.37 Total: -37.30 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.80 -9.14 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723121778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.093 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds