Wall clock time and date at job start Thu Apr 9 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 H 1.09004 * 115.54928 * 29.33194 * 3 2 1 5 5 C 1.52999 * 117.50020 * 243.61916 * 3 2 1 6 6 C 1.52998 * 60.00125 * 252.51102 * 5 3 2 7 7 H 1.09000 * 117.51736 * 107.47987 * 6 5 3 8 8 C 1.53001 * 117.49898 * 252.51216 * 6 5 3 9 9 N 1.46899 * 109.46846 * 243.46515 * 8 6 5 10 10 C 1.46844 * 111.00426 * 292.30584 * 9 8 6 11 11 C 1.53038 * 109.52348 * 185.83873 * 10 9 8 12 12 C 1.53113 * 109.28120 * 300.82111 * 11 10 9 13 13 C 1.50696 * 109.52654 * 177.55973 * 12 11 10 14 14 H 1.08007 * 119.99878 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00291 * 179.72182 * 13 12 11 16 16 N 1.31509 * 119.99937 * 180.27265 * 15 13 12 17 17 Si 1.86793 * 119.99847 * 0.28140 * 15 13 12 18 18 H 1.48498 * 109.47585 * 89.99789 * 17 15 13 19 19 H 1.48504 * 109.47250 * 209.99669 * 17 15 13 20 20 H 1.48498 * 109.47270 * 329.99179 * 17 15 13 21 21 C 1.53117 * 109.15847 * 57.65469 * 12 11 10 22 22 C 1.46843 * 110.99982 * 56.52113 * 9 8 6 23 23 H 1.08998 * 109.47302 * 300.00231 * 1 2 3 24 24 H 1.09007 * 109.47203 * 60.00139 * 1 2 3 25 25 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47302 * 239.99769 * 2 1 3 27 27 H 1.08999 * 109.47108 * 120.00214 * 2 1 3 28 28 H 1.08997 * 117.49641 * 145.01940 * 5 3 2 29 29 H 1.09001 * 117.49544 * 0.02562 * 5 3 2 30 30 H 1.09004 * 109.46918 * 123.46826 * 8 6 5 31 31 H 1.08997 * 109.47136 * 3.46575 * 8 6 5 32 32 H 1.09003 * 109.46295 * 65.82475 * 10 9 8 33 33 H 1.09004 * 109.46224 * 305.85736 * 10 9 8 34 34 H 1.09001 * 109.50247 * 180.87857 * 11 10 9 35 35 H 1.08996 * 109.50141 * 60.76800 * 11 10 9 36 36 H 1.09006 * 109.52025 * 297.68843 * 12 11 10 37 37 H 0.97002 * 120.00185 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.50551 * 62.28880 * 21 12 11 39 39 H 1.09009 * 109.50356 * 182.40452 * 21 12 11 40 40 H 1.09010 * 109.46138 * 294.17434 * 22 9 8 41 41 H 1.09002 * 109.46887 * 54.13890 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7719 0.1966 8 6 4.0300 2.8804 0.9033 9 7 5.4947 2.8491 1.0109 10 6 5.9364 1.7358 1.8604 11 6 7.4503 1.8203 2.0679 12 6 8.1513 1.7584 0.7081 13 6 9.6389 1.9013 0.9013 14 1 10.0452 2.0237 1.8945 15 6 10.4820 1.8696 -0.1893 16 7 11.7807 1.9890 -0.0201 17 14 9.7794 1.6573 -1.9070 18 1 9.4821 2.9910 -2.4885 19 1 10.7682 0.9535 -2.7627 20 1 8.5296 0.8586 -1.8354 21 6 7.6379 2.8996 -0.1743 22 6 6.1186 2.7839 -0.3168 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.7213 2.9427 -1.5343 29 1 3.0092 1.1859 -2.0158 30 1 3.5920 2.8661 1.9014 31 1 3.7230 3.7886 0.3847 32 1 5.6882 0.7903 1.3782 33 1 5.4337 1.7940 2.8258 34 1 7.7801 0.9849 2.6857 35 1 7.6980 2.7594 2.5627 36 1 7.9361 0.8024 0.2306 37 1 12.3738 1.9670 -0.7873 38 1 7.8885 3.8558 0.2851 39 1 8.1017 2.8355 -1.1587 40 1 5.8694 1.8335 -0.7889 41 1 5.7482 3.6033 -0.9329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723121778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:44 Heat of formation + Delta-G solvation = -8.859347 kcal Electronic energy + Delta-G solvation = -17432.490692 eV Core-core repulsion = 14925.455747 eV Total energy + Delta-G solvation = -2507.034944 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47831 -38.55449 -35.65718 -33.79931 -32.59917 -31.71214 -28.78822 -26.01473 -24.67833 -24.07660 -23.22017 -21.74026 -21.37104 -19.98816 -18.83556 -17.27400 -16.40910 -15.99877 -15.95843 -15.41668 -15.22243 -14.94737 -14.76080 -14.39264 -14.20814 -13.59124 -13.39518 -13.17184 -12.92347 -12.80931 -12.74133 -12.51317 -12.19707 -12.05834 -12.01102 -11.89147 -11.69168 -11.42887 -10.98946 -10.86949 -10.74641 -10.62537 -10.55600 -9.12524 -8.30308 -6.33150 1.28266 1.32974 1.43794 2.31495 2.80099 3.05090 3.11745 3.64493 3.91441 4.04462 4.12256 4.15881 4.24738 4.30810 4.37340 4.48241 4.52107 4.56331 4.61115 4.71504 4.79740 4.84318 4.86422 4.90727 4.96313 4.96651 4.99146 5.15725 5.19809 5.22557 5.25525 5.28669 5.36276 5.51567 5.52977 5.67585 5.78282 6.20758 6.31691 6.33083 6.73934 7.32068 8.87028 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036703 B = 0.005666 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.695909 B = 4940.458746 C = 5235.121558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.131 4.131 4 H 0.115 0.885 5 C -0.174 4.174 6 C -0.196 4.196 7 H 0.085 0.915 8 C 0.090 3.910 9 N -0.539 5.539 10 C 0.065 3.935 11 C -0.094 4.094 12 C 0.013 3.987 13 C -0.517 4.517 14 H 0.031 0.969 15 C 0.010 3.990 16 N -0.952 5.952 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.298 1.298 20 H -0.251 1.251 21 C -0.115 4.115 22 C 0.069 3.931 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.014 0.986 37 H 0.265 0.735 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.771 -1.164 -1.677 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.150 4.150 4 H 0.133 0.867 5 C -0.211 4.211 6 C -0.216 4.216 7 H 0.103 0.897 8 C -0.038 4.038 9 N -0.262 5.262 10 C -0.062 4.062 11 C -0.132 4.132 12 C -0.006 4.006 13 C -0.555 4.555 14 H 0.050 0.950 15 C -0.187 4.187 16 N -0.593 5.593 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.226 1.226 20 H -0.175 1.175 21 C -0.153 4.153 22 C -0.059 4.059 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.450 -0.713 -1.517 23.510 hybrid contribution 0.595 -0.878 -1.116 1.540 sum -22.855 -1.591 -2.634 23.061 Atomic orbital electron populations 1.21713 0.94331 1.02000 1.02181 1.21143 0.96885 0.93891 1.01536 1.22483 0.92372 0.98428 1.01697 0.86705 1.23213 1.04114 1.02545 0.91213 1.23114 0.95836 1.01092 1.01511 0.89653 1.21883 0.85926 0.95639 1.00320 1.62126 1.07102 1.44282 1.12733 1.22061 0.95115 0.91694 0.97363 1.21413 0.94017 1.00702 0.97072 1.19134 0.93181 0.93852 0.94452 1.21431 0.91804 1.48731 0.93574 0.95032 1.25893 0.94840 0.94405 1.03517 1.70056 1.04247 1.52816 1.32184 0.85801 0.78123 0.78894 0.79357 1.19071 1.22621 1.17486 1.21889 0.94674 1.00354 0.98402 1.21957 0.93617 1.00049 0.90291 0.92141 0.92492 0.92270 0.92598 0.92041 0.88123 0.89498 0.89497 0.89934 0.95167 0.89435 0.92744 0.93119 0.96752 0.92614 0.92703 0.94556 0.95259 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.87 71.98 0.71 -1.16 16 2 C -0.10 -1.58 6.22 30.59 0.19 -1.39 16 3 C -0.13 -2.27 5.46 -10.79 -0.06 -2.33 16 4 H 0.11 1.74 8.08 -2.38 -0.02 1.72 16 5 C -0.17 -3.34 9.82 30.59 0.30 -3.04 16 6 C -0.20 -4.28 3.95 -10.79 -0.04 -4.32 16 7 H 0.09 2.23 6.32 -2.39 -0.02 2.21 16 8 C 0.09 2.06 5.65 86.30 0.49 2.55 16 9 N -0.54 -16.54 4.86 -896.35 -4.35 -20.90 16 10 C 0.07 2.07 5.17 86.33 0.45 2.52 16 11 C -0.09 -3.81 5.32 30.64 0.16 -3.65 16 12 C 0.01 0.61 1.75 -11.46 -0.02 0.59 16 13 C -0.52 -30.49 9.14 25.60 0.23 -30.26 16 14 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 15 C 0.01 0.59 5.45 84.66 0.46 1.05 16 16 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 17 Si 0.95 46.35 24.37 68.60 1.67 48.02 16 18 H -0.26 -12.24 6.90 99.48 0.69 -11.55 16 19 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 20 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16 21 C -0.12 -4.98 4.84 30.65 0.15 -4.83 16 22 C 0.07 2.33 5.00 86.33 0.43 2.76 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.96 7.88 -2.39 -0.02 0.95 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.77 8.03 -2.39 -0.02 1.75 16 29 H 0.09 1.71 8.03 -2.39 -0.02 1.69 16 30 H 0.09 1.78 8.03 -2.39 -0.02 1.76 16 31 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 32 H 0.03 0.95 6.61 -2.39 -0.02 0.94 16 33 H 0.09 2.37 8.04 -2.39 -0.02 2.35 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.01 0.70 7.19 -2.38 -0.02 0.69 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 1.63 3.40 -2.38 -0.01 1.62 16 40 H 0.03 1.00 7.06 -2.38 -0.02 0.98 16 41 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 Total: -1.00 -65.47 309.29 1.95 -63.51 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.89 Total: 11.69 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.45 Total: -41.50 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -4.05 Total: -81.72 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.67 Total: 48.02 kcal Total: -65.47 1.95 -63.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723121778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.654 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds