Wall clock time and date at job start Thu Apr 9 2020 12:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47386 * 2 1 4 4 H 1.08999 * 115.54828 * 29.33382 * 3 2 1 5 5 C 1.53002 * 117.50089 * 243.62185 * 3 2 1 6 6 C 1.53003 * 117.49830 * 174.99688 * 3 2 1 7 7 H 1.09001 * 117.50181 * 359.97438 * 6 3 2 8 8 C 1.52997 * 117.49937 * 214.97794 * 6 3 2 9 9 N 1.46899 * 109.47023 * 175.00380 * 8 6 3 10 10 C 1.46844 * 111.00001 * 45.79334 * 9 8 6 11 11 C 1.53036 * 109.52085 * 185.83807 * 10 9 8 12 12 C 1.53114 * 109.28047 * 300.81827 * 11 10 9 13 13 C 1.53121 * 109.15992 * 57.65972 * 12 11 10 14 14 H 1.09002 * 109.50538 * 62.28344 * 13 12 11 15 15 C 1.50695 * 109.53552 * 182.38502 * 13 12 11 16 16 H 1.08006 * 120.00105 * 119.90184 * 15 13 12 17 17 C 1.37879 * 120.00152 * 299.89637 * 15 13 12 18 18 N 1.31514 * 120.00115 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 119.99745 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47169 * 89.99748 * 19 17 15 21 21 H 1.48500 * 109.46826 * 209.99976 * 19 17 15 22 22 H 1.48497 * 109.46937 * 329.99459 * 19 17 15 23 23 C 1.46847 * 111.00234 * 170.00463 * 9 8 6 24 24 H 1.08998 * 109.47425 * 59.99806 * 1 2 3 25 25 H 1.09001 * 109.47738 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47357 * 299.99783 * 1 2 3 27 27 H 1.09003 * 109.47357 * 240.00217 * 2 1 3 28 28 H 1.09007 * 109.47358 * 120.00363 * 2 1 3 29 29 H 1.08999 * 117.49587 * 145.02170 * 5 3 2 30 30 H 1.08994 * 117.49629 * 0.02562 * 5 3 2 31 31 H 1.09006 * 109.47047 * 55.00465 * 8 6 3 32 32 H 1.08994 * 109.47611 * 295.00422 * 8 6 3 33 33 H 1.08993 * 109.46353 * 305.85080 * 10 9 8 34 34 H 1.08999 * 109.46264 * 65.83671 * 10 9 8 35 35 H 1.09002 * 109.50843 * 60.76520 * 11 10 9 36 36 H 1.09003 * 109.50039 * 180.87891 * 11 10 9 37 37 H 1.08999 * 109.52750 * 297.75107 * 12 11 10 38 38 H 1.09007 * 109.52737 * 177.56226 * 12 11 10 39 39 H 0.97000 * 119.99872 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.46500 * 54.14075 * 23 9 8 41 41 H 1.09004 * 109.46099 * 294.18152 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8440 1.9075 -1.2158 6 6 3.5501 1.6578 0.1184 7 1 4.1803 0.7718 0.1967 8 6 4.0301 2.8803 0.9032 9 7 5.4951 2.8510 1.0075 10 6 6.1087 2.5337 -0.2883 11 6 7.6198 2.3686 -0.1118 12 6 8.2082 3.6664 0.4484 13 6 7.5182 3.9998 1.7741 14 1 7.7149 3.2074 2.4962 15 6 8.0496 5.3066 2.3040 16 1 7.3787 6.1382 2.4618 17 6 9.3923 5.4407 2.5875 18 7 9.8559 6.5810 3.0505 19 14 10.5527 4.0026 2.3140 20 1 11.0930 4.0585 0.9320 21 1 11.6722 4.0781 3.2868 22 1 9.8152 2.7281 2.5061 23 6 6.0100 4.1177 1.5430 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7213 2.9427 -1.5343 30 1 3.0091 1.1860 -2.0159 31 1 3.5943 2.8646 1.9023 32 1 3.7208 3.7885 0.3861 33 1 5.6846 1.6065 -0.6736 34 1 5.9116 3.3430 -0.9913 35 1 7.8182 1.5504 0.5806 36 1 8.0769 2.1485 -1.0765 37 1 8.0442 4.4770 -0.2615 38 1 9.2776 3.5389 0.6165 39 1 10.8006 6.6754 3.2496 40 1 5.5142 4.3410 2.4876 41 1 5.8131 4.9195 0.8313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723124396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:47 Heat of formation + Delta-G solvation = 9.975791 kcal Electronic energy + Delta-G solvation = -17252.312352 eV Core-core repulsion = 14746.094160 eV Total energy + Delta-G solvation = -2506.218191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.07944 -37.47243 -33.84344 -32.34404 -31.56940 -30.23849 -26.64243 -24.93560 -23.94912 -22.54853 -21.57835 -20.61012 -19.79577 -18.80635 -16.69861 -15.90497 -15.09696 -14.82474 -14.49507 -14.09829 -13.81758 -13.60663 -13.39627 -12.84846 -12.74595 -12.31449 -12.20034 -12.10550 -11.87761 -11.45396 -11.25073 -11.12306 -11.01624 -10.91203 -10.50252 -10.06195 -9.95986 -9.92113 -9.63079 -9.62552 -9.04242 -8.88525 -8.48073 -7.74390 -6.03875 -4.02731 3.31340 3.42308 3.46315 3.70738 4.27844 4.45769 4.62668 4.80940 4.92115 5.03527 5.19016 5.27135 5.29041 5.47295 5.52920 5.58600 5.60965 5.71988 5.76178 5.81627 5.90106 5.94384 5.96338 5.99287 6.07658 6.19772 6.21665 6.31727 6.36019 6.38608 6.54713 6.65837 6.86271 6.88771 7.24752 7.47116 7.68052 7.70026 7.91702 8.55770 8.99347 9.59196 11.09448 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051816 B = 0.004910 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.247374 B = 5701.034549 C = 5925.891648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.150 4.150 4 H 0.102 0.898 5 C -0.180 4.180 6 C -0.141 4.141 7 H 0.111 0.889 8 C 0.086 3.914 9 N -0.540 5.540 10 C 0.063 3.937 11 C -0.121 4.121 12 C -0.122 4.122 13 C 0.020 3.980 14 H 0.035 0.965 15 C -0.513 4.513 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.903 5.903 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.263 1.263 23 C 0.077 3.923 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 -12.051 -7.923 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.169 4.169 4 H 0.120 0.880 5 C -0.216 4.216 6 C -0.159 4.159 7 H 0.129 0.871 8 C -0.042 4.042 9 N -0.265 5.265 10 C -0.065 4.065 11 C -0.159 4.159 12 C -0.159 4.159 13 C 0.001 3.999 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.188 1.188 23 C -0.050 4.050 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.867 -12.313 -7.528 20.015 hybrid contribution 0.576 0.100 -0.778 0.973 sum -13.292 -12.213 -8.307 19.870 Atomic orbital electron populations 1.21743 0.95682 1.01353 1.01834 1.21104 0.95720 0.94324 1.01908 1.22463 0.93970 0.97835 1.02589 0.87997 1.23221 1.04796 1.02008 0.91624 1.22482 0.93995 1.00712 0.98740 0.87089 1.21662 0.89031 0.94271 0.99234 1.62073 1.03641 1.35222 1.25551 1.22011 0.95048 0.99484 0.89968 1.21674 0.94552 0.99700 0.99949 1.22016 0.98949 0.95224 0.99761 1.19155 0.90230 0.97762 0.92763 0.94666 1.21016 0.94051 0.97264 1.42855 0.91005 1.24988 0.98188 0.95507 0.94472 1.69903 1.14488 1.24636 1.45153 0.86814 0.80282 0.84005 0.76989 1.20746 1.22653 1.18794 1.22078 0.97712 0.87027 0.98158 0.92776 0.92906 0.92681 0.92073 0.91590 0.89153 0.89113 0.90705 0.95261 0.91409 0.95681 0.91921 0.92946 0.92645 0.93627 0.92724 0.91569 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.87 37.15 0.37 -0.77 16 2 C -0.09 -0.83 6.21 -26.74 -0.17 -0.99 16 3 C -0.15 -1.53 5.46 -90.62 -0.49 -2.02 16 4 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 5 C -0.18 -1.91 9.82 -26.73 -0.26 -2.17 16 6 C -0.14 -1.71 3.97 -90.62 -0.36 -2.07 16 7 H 0.11 1.42 7.31 -51.93 -0.38 1.04 16 8 C 0.09 1.25 5.55 -3.83 -0.02 1.23 16 9 N -0.54 -9.57 4.81 -234.68 -1.13 -10.70 16 10 C 0.06 1.04 5.08 -3.84 -0.02 1.02 16 11 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 12 C -0.12 -2.70 4.74 -26.61 -0.13 -2.82 16 13 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 14 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 15 C -0.51 -14.59 9.15 -34.44 -0.31 -14.91 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 17 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 19 Si 0.89 22.43 24.35 -169.99 -4.14 18.29 16 20 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 21 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 23 C 0.08 1.60 4.65 -3.84 -0.02 1.59 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.52 7.88 -51.93 -0.41 0.11 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 30 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.43 7.81 -51.93 -0.41 0.03 16 33 H 0.07 0.98 6.02 -51.93 -0.31 0.67 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.06 3.36 -51.93 -0.17 0.89 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -29.72 311.08 -9.21 -38.93 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.56 Total: -1.97 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.84 Total: -22.02 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.35 Total: -37.91 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.72 -9.21 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723124396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.902 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds