Wall clock time and date at job start Thu Apr 9 2020 12:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37479 * 120.00396 * 2 1 4 4 N 1.30346 * 120.00024 * 174.15209 * 3 2 1 5 5 N 1.37475 * 120.00041 * 354.15548 * 3 2 1 6 6 C 1.46503 * 120.00302 * 184.94264 * 5 3 2 7 7 C 1.52997 * 109.47325 * 175.01725 * 6 5 3 8 8 C 1.50701 * 115.54880 * 306.65635 * 7 6 5 9 9 H 1.07997 * 119.99912 * 144.27784 * 8 7 6 10 10 C 1.37876 * 120.00281 * 324.27514 * 8 7 6 11 11 N 1.31517 * 119.99591 * 3.17072 * 10 8 7 12 12 Si 1.86796 * 120.00106 * 183.16943 * 10 8 7 13 13 H 1.48503 * 109.47232 * 90.00280 * 12 10 8 14 14 H 1.48504 * 109.46986 * 209.99806 * 12 10 8 15 15 H 1.48501 * 109.47030 * 329.99736 * 12 10 8 16 16 C 1.53003 * 117.49788 * 160.98772 * 7 6 5 17 17 C 1.52999 * 117.49840 * 92.32538 * 7 6 5 18 18 C 1.46502 * 119.99448 * 180.02562 * 2 1 3 19 19 C 1.53003 * 117.50243 * 8.74170 * 18 2 1 20 20 C 1.53008 * 117.49937 * 300.08111 * 18 2 1 21 21 H 1.09001 * 109.46880 * 94.12829 * 1 2 3 22 22 H 1.08996 * 109.47321 * 214.13075 * 1 2 3 23 23 H 1.09002 * 109.46378 * 334.13384 * 1 2 3 24 24 H 0.96995 * 120.00165 * 180.02562 * 4 3 2 25 25 H 0.97000 * 120.00174 * 4.94417 * 5 3 2 26 26 H 1.09000 * 109.47026 * 295.01746 * 6 5 3 27 27 H 1.09003 * 109.47095 * 55.01586 * 6 5 3 28 28 H 0.97005 * 119.99479 * 185.00914 * 11 10 8 29 29 H 1.08996 * 117.49954 * 359.97438 * 16 7 6 30 30 H 1.08998 * 117.49981 * 145.02370 * 16 7 6 31 31 H 1.09003 * 117.49772 * 214.97725 * 17 7 6 32 32 H 1.09003 * 117.50164 * 359.97438 * 17 7 6 33 33 H 1.09004 * 115.55285 * 154.41893 * 18 2 1 34 34 H 1.08997 * 117.49693 * 0.02562 * 19 18 2 35 35 H 1.08996 * 117.49939 * 145.02464 * 19 18 2 36 36 H 1.08996 * 117.50058 * 214.98582 * 20 18 2 37 37 H 1.09007 * 117.49067 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1525 1.1906 0.0000 4 7 3.4509 1.1934 0.1150 5 7 1.4706 2.3781 -0.1212 6 6 2.2087 3.6389 -0.2302 7 6 1.2262 4.7854 -0.4775 8 6 0.2871 4.5970 -1.6410 9 1 -0.7260 4.9664 -1.5825 10 6 0.7214 3.9532 -2.7803 11 7 1.9349 3.4485 -2.8282 12 14 -0.4138 3.7977 -4.2555 13 1 -0.2295 4.9705 -5.1477 14 1 -0.0907 2.5540 -4.9999 15 1 -1.8236 3.7451 -3.7919 16 6 1.7105 6.2066 -0.1834 17 6 0.6946 5.5362 0.7450 18 6 2.1974 -1.2688 -0.0006 19 6 1.3889 -2.5512 -0.2074 20 6 1.9614 -2.2213 1.1734 21 1 -0.3633 -0.0740 -1.0250 22 1 -0.3634 -0.8506 0.5766 23 1 -0.3632 0.9248 0.4484 24 1 3.9359 2.0334 0.1154 25 1 0.5007 2.3813 -0.1346 26 1 2.7546 3.8215 0.6954 27 1 2.9120 3.5776 -1.0608 28 1 2.2664 3.0601 -3.6530 29 1 2.7289 6.3248 0.1867 30 1 1.3496 7.0055 -0.8311 31 1 -0.3342 5.8944 0.7075 32 1 1.0445 5.2132 1.7255 33 1 3.2007 -1.2324 -0.4252 34 1 0.3121 -2.4508 -0.3435 35 1 1.8603 -3.3585 -0.7678 36 1 2.8093 -2.8116 1.5208 37 1 1.2615 -1.9035 1.9464 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849025945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:53 Heat of formation + Delta-G solvation = 96.645759 kcal Electronic energy + Delta-G solvation = -17408.060333 eV Core-core repulsion = 14802.060090 eV Total energy + Delta-G solvation = -2606.000243 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.68504 -37.18503 -35.53884 -32.40412 -32.12309 -30.44464 -26.10442 -25.86736 -25.16575 -22.18819 -21.41760 -21.13921 -19.23349 -18.44291 -17.10968 -16.32796 -16.05430 -14.83982 -14.71206 -14.25787 -13.88290 -13.79713 -13.13738 -12.45479 -12.28896 -12.16996 -11.96906 -11.57551 -11.28980 -11.22883 -11.09192 -10.76496 -10.55177 -10.38691 -10.20433 -9.97165 -9.61802 -9.03121 -8.84879 -8.42225 -8.25966 -7.51600 -6.90109 -6.01116 -4.19309 3.20596 3.29411 3.30050 3.30598 3.89348 4.28474 4.30171 4.71605 5.00593 5.12206 5.19826 5.22206 5.38600 5.46793 5.70856 5.79829 5.95835 5.99480 6.05871 6.23634 6.26584 6.28784 6.51654 6.57419 6.64797 6.78520 6.86468 7.03856 7.23051 7.45125 7.52952 7.73298 7.89593 8.27300 8.31025 8.79191 9.13590 9.43676 9.75188 10.89122 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.008393 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.196708 B = 3335.353496 C = 4030.851388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.594 5.594 3 C 0.645 3.355 4 N -0.851 5.851 5 N -0.730 5.730 6 C 0.178 3.822 7 C 0.041 3.959 8 C -0.497 4.497 9 H 0.059 0.941 10 C 0.077 3.923 11 N -0.863 5.863 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.199 4.199 17 C -0.212 4.212 18 C 0.137 3.863 19 C -0.202 4.202 20 C -0.204 4.204 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.335 0.665 25 H 0.387 0.613 26 H 0.007 0.993 27 H 0.107 0.893 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -7.214 4.641 8.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.317 5.317 3 C 0.279 3.721 4 N -0.501 5.501 5 N -0.372 5.372 6 C 0.054 3.946 7 C 0.040 3.960 8 C -0.534 4.534 9 H 0.077 0.923 10 C -0.128 4.128 11 N -0.499 5.499 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.238 4.238 17 C -0.250 4.250 18 C 0.030 3.970 19 C -0.240 4.240 20 C -0.244 4.244 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.151 0.849 25 H 0.221 0.779 26 H 0.025 0.975 27 H 0.124 0.876 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.633 -8.057 4.597 9.419 hybrid contribution -1.373 1.067 -0.928 1.971 sum -3.005 -6.990 3.669 8.447 Atomic orbital electron populations 1.21507 0.80001 1.02072 1.01240 1.44855 1.03774 1.01734 1.81308 1.18453 0.87326 0.79267 0.87016 1.69460 1.02708 1.34775 1.43199 1.45184 1.09073 1.03667 1.79228 1.20886 0.94718 0.81109 0.97876 1.19155 0.96049 0.88089 0.92713 1.20457 0.97266 1.37357 0.98298 0.92293 1.24953 0.95384 0.93912 0.98520 1.69849 1.16245 1.37512 1.26300 0.86586 0.80996 0.77580 0.82832 1.20630 1.21218 1.19908 1.22951 0.96567 1.00320 1.03970 1.22949 0.97868 1.09286 0.94872 1.21221 0.96557 0.78964 1.00210 1.23398 1.00399 0.99876 1.00313 1.23383 1.03591 1.05229 0.92184 0.93233 0.91980 0.91328 0.84861 0.77883 0.97536 0.87572 0.92820 0.91527 0.90235 0.90701 0.91417 0.85013 0.88779 0.88496 0.88731 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.42 9.39 59.85 0.56 1.98 16 2 N -0.59 -10.59 3.29 -175.67 -0.58 -11.16 16 3 C 0.64 13.62 8.38 -320.10 -2.68 10.93 16 4 N -0.85 -18.79 12.94 30.15 0.39 -18.40 16 5 N -0.73 -15.79 4.99 -61.79 -0.31 -16.10 16 6 C 0.18 4.10 3.96 -4.04 -0.02 4.09 16 7 C 0.04 0.95 2.04 -155.66 -0.32 0.63 16 8 C -0.50 -12.60 8.39 -34.44 -0.29 -12.89 16 9 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.08 1.97 5.29 -17.82 -0.09 1.87 16 11 N -0.86 -22.82 10.18 55.43 0.56 -22.25 16 12 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16 17 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 18 C 0.14 2.15 6.19 -67.92 -0.42 1.73 16 19 C -0.20 -2.46 9.73 -26.69 -0.26 -2.72 16 20 C -0.20 -2.61 10.12 -26.69 -0.27 -2.88 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.75 6.52 -51.93 -0.34 0.41 16 23 H 0.07 1.02 6.38 -51.93 -0.33 0.69 16 24 H 0.34 7.55 7.17 -40.82 -0.29 7.26 16 25 H 0.39 8.27 5.96 -40.82 -0.24 8.03 16 26 H 0.01 0.15 7.94 -51.93 -0.41 -0.26 16 27 H 0.11 2.75 5.79 -51.93 -0.30 2.44 16 28 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.13 2.28 7.69 -51.93 -0.40 1.88 16 34 H 0.09 1.09 6.56 -51.93 -0.34 0.75 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -26.92 300.81 -10.32 -37.25 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -5.58 Total: 17.43 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.32 Total: -6.53 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: 0.07 Total: -67.92 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.92 -10.32 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849025945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.891 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds