Wall clock time and date at job start Thu Apr 9 2020 12:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 H 1.08996 * 115.56200 * 9.41296 * 15 14 2 17 17 C 1.53096 * 117.50561 * 223.69633 * 15 14 2 18 18 C 1.52552 * 117.50961 * 155.14058 * 15 14 2 19 19 C 1.53874 * 120.82365 * 357.24576 * 18 15 14 20 20 C 1.54997 * 104.06234 * 192.36326 * 19 18 15 21 21 C 1.54928 * 102.82065 * 37.56776 * 20 19 18 22 22 C 1.53482 * 121.08947 * 217.88203 * 18 15 14 23 23 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 27 27 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 31 31 H 1.00895 * 111.00265 * 38.95653 * 14 2 1 32 32 H 1.09000 * 117.51269 * 359.97438 * 17 15 14 33 33 H 1.09001 * 117.50825 * 145.08497 * 17 15 14 34 34 H 1.08995 * 110.51225 * 311.00616 * 19 18 15 35 35 H 1.08997 * 110.51289 * 73.71890 * 19 18 15 36 36 H 1.08993 * 110.74404 * 279.23469 * 20 19 18 37 37 H 1.08995 * 110.89862 * 155.97233 * 20 19 18 38 38 H 1.08996 * 110.47962 * 203.59541 * 21 20 19 39 39 H 1.09002 * 110.59141 * 81.01953 * 21 20 19 40 40 H 1.09007 * 110.07181 * 263.30863 * 22 18 15 41 41 H 1.09000 * 110.07005 * 24.83311 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 4.8915 -2.8122 -5.0865 12 1 6.7638 -1.2764 -5.2086 13 1 6.9639 -3.3332 -3.9394 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 1 1.6208 1.1985 2.1960 17 6 3.3279 0.1593 3.2347 18 6 1.9963 -0.3893 3.7417 19 6 1.7865 -1.9023 3.9273 20 6 1.4394 -2.0527 5.4304 21 6 0.5693 -0.8016 5.7092 22 6 1.2286 0.3137 4.8696 23 1 -0.3635 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 3.9995 -1.0726 -0.4258 29 1 3.8532 0.4372 -1.3572 30 1 7.2197 -0.8005 -2.1917 31 1 1.4496 -1.4979 1.4100 32 1 4.1005 -0.5617 2.9674 33 1 3.6853 1.0934 3.6681 34 1 0.9608 -2.2522 3.3079 35 1 2.7005 -2.4466 3.6901 36 1 2.3436 -2.0375 6.0388 37 1 0.8712 -2.9656 5.6088 38 1 0.5954 -0.5473 6.7688 39 1 -0.4574 -0.9681 5.3831 40 1 1.9168 0.8901 5.4879 41 1 0.4641 0.9680 4.4505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:43 Heat of formation + Delta-G solvation = -7.712058 kcal Electronic energy + Delta-G solvation = -17075.239312 eV Core-core repulsion = 14568.254118 eV Total energy + Delta-G solvation = -2506.985194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32057 -36.57496 -34.03498 -32.72411 -30.01528 -28.84374 -28.21246 -25.31791 -24.99752 -21.65595 -21.00916 -20.64769 -19.72904 -18.50255 -16.08698 -15.98763 -15.44441 -15.01839 -14.39596 -14.01245 -13.51917 -13.34970 -13.07151 -12.61469 -12.55852 -12.31714 -12.02071 -11.60280 -11.32663 -11.18299 -11.12909 -11.02609 -10.85380 -10.81344 -10.62377 -10.44661 -10.28492 -10.17073 -9.59890 -9.35390 -9.13346 -8.83794 -8.19609 -7.71264 -5.85064 -3.86085 3.38302 3.45441 3.49655 3.95923 4.27006 4.56928 4.66075 4.67150 4.96614 5.01818 5.27453 5.40274 5.43410 5.46409 5.50371 5.56880 5.60896 5.74276 5.76750 5.78041 5.89255 5.96068 6.00321 6.09704 6.14017 6.18345 6.25127 6.29610 6.31403 6.45342 6.51583 6.73888 6.92629 7.35981 7.61063 7.85378 7.89469 8.12559 8.28031 8.61593 9.23425 9.76366 11.26018 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032866 B = 0.004906 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.747827 B = 5705.958833 C = 6076.142656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.638 5.638 15 C 0.040 3.960 16 H 0.092 0.908 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.085 4.085 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.087 4.087 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.007 0.993 30 H 0.257 0.743 31 H 0.336 0.664 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 1.118 14.217 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.268 5.268 15 C -0.071 4.071 16 H 0.110 0.890 17 C -0.193 4.193 18 C -0.148 4.148 19 C -0.122 4.122 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.125 4.125 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.922 1.219 14.047 17.835 hybrid contribution -0.444 -0.290 -0.686 0.868 sum -11.367 0.929 13.360 17.566 Atomic orbital electron populations 1.22566 0.98606 1.01477 1.01217 1.21802 0.90851 0.98376 0.91377 0.90936 1.21626 1.00683 0.98314 0.93010 1.18993 0.88247 0.96504 0.96998 1.21400 0.91857 1.33877 1.08455 0.93088 1.24997 0.97150 0.95809 0.96486 1.69995 1.02076 1.44464 1.36903 0.86638 0.78815 0.79537 0.83585 1.19890 1.21194 1.21143 1.60248 1.56690 1.08180 1.01725 1.22435 1.01645 0.96444 0.86597 0.89033 1.23268 0.91471 1.02315 1.02237 1.22159 1.01559 0.95515 0.95559 1.21741 1.01535 0.93342 0.95624 1.22460 0.99487 0.97446 0.96523 1.22335 0.98951 0.95426 0.99262 1.21634 0.98319 0.97180 0.95357 0.93729 0.92318 0.92875 0.93501 0.93544 0.94924 0.97477 0.93341 0.84359 0.87958 0.89349 0.91709 0.91073 0.91544 0.91849 0.91998 0.91903 0.91792 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.16 37.16 0.34 -2.16 16 2 C 0.09 1.48 2.48 -67.72 -0.17 1.31 16 3 H 0.07 1.32 7.74 -51.93 -0.40 0.92 16 4 C -0.10 -2.08 4.83 -26.74 -0.13 -2.21 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 N -0.64 -10.66 5.84 -99.93 -0.58 -11.25 16 15 C 0.04 0.58 5.83 -67.89 -0.40 0.19 16 16 H 0.09 1.30 7.77 -51.93 -0.40 0.90 16 17 C -0.15 -2.24 10.17 -26.84 -0.27 -2.52 16 18 C -0.15 -1.83 2.46 -154.20 -0.38 -2.21 16 19 C -0.08 -1.00 5.81 -25.22 -0.15 -1.15 16 20 C -0.12 -1.19 6.91 -24.66 -0.17 -1.36 16 21 C -0.12 -1.13 6.84 -24.99 -0.17 -1.30 16 22 C -0.09 -0.91 6.55 -25.76 -0.17 -1.08 16 23 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.34 5.18 7.01 -39.29 -0.28 4.90 16 32 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.75 7.41 -51.93 -0.38 0.37 16 35 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -30.71 326.19 -9.90 -40.62 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.74 Total: 1.28 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.21 Total: -25.78 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.15 Total: -38.33 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.71 -9.90 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.906 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds