Wall clock time and date at job start Thu Apr 9 2020 12:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 H 1.08996 * 115.56200 * 9.41296 * 15 14 2 17 17 C 1.53096 * 117.50561 * 223.69633 * 15 14 2 18 18 C 1.52552 * 117.50961 * 155.14058 * 15 14 2 19 19 C 1.53874 * 120.82365 * 357.24576 * 18 15 14 20 20 C 1.54997 * 104.06234 * 192.36326 * 19 18 15 21 21 C 1.54928 * 102.82065 * 37.56776 * 20 19 18 22 22 C 1.53482 * 121.08947 * 217.88203 * 18 15 14 23 23 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 27 27 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 31 31 H 1.00895 * 111.00265 * 38.95653 * 14 2 1 32 32 H 1.09000 * 117.51269 * 359.97438 * 17 15 14 33 33 H 1.09001 * 117.50825 * 145.08497 * 17 15 14 34 34 H 1.08995 * 110.51225 * 311.00616 * 19 18 15 35 35 H 1.08997 * 110.51289 * 73.71890 * 19 18 15 36 36 H 1.08993 * 110.74404 * 279.23469 * 20 19 18 37 37 H 1.08995 * 110.89862 * 155.97233 * 20 19 18 38 38 H 1.08996 * 110.47962 * 203.59541 * 21 20 19 39 39 H 1.09002 * 110.59141 * 81.01953 * 21 20 19 40 40 H 1.09007 * 110.07181 * 263.30863 * 22 18 15 41 41 H 1.09000 * 110.07005 * 24.83311 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 4.8915 -2.8122 -5.0865 12 1 6.7638 -1.2764 -5.2086 13 1 6.9639 -3.3332 -3.9394 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 1 1.6208 1.1985 2.1960 17 6 3.3279 0.1593 3.2347 18 6 1.9963 -0.3893 3.7417 19 6 1.7865 -1.9023 3.9273 20 6 1.4394 -2.0527 5.4304 21 6 0.5693 -0.8016 5.7092 22 6 1.2286 0.3137 4.8696 23 1 -0.3635 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 3.9995 -1.0726 -0.4258 29 1 3.8532 0.4372 -1.3572 30 1 7.2197 -0.8005 -2.1917 31 1 1.4496 -1.4979 1.4100 32 1 4.1005 -0.5617 2.9674 33 1 3.6853 1.0934 3.6681 34 1 0.9608 -2.2522 3.3079 35 1 2.7005 -2.4466 3.6901 36 1 2.3436 -2.0375 6.0388 37 1 0.8712 -2.9656 5.6088 38 1 0.5954 -0.5473 6.7688 39 1 -0.4574 -0.9681 5.3831 40 1 1.9168 0.8901 5.4879 41 1 0.4641 0.9680 4.4505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:42 Heat of formation + Delta-G solvation = -24.869869 kcal Electronic energy + Delta-G solvation = -17075.983331 eV Core-core repulsion = 14568.254118 eV Total energy + Delta-G solvation = -2507.729213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38128 -37.91230 -35.48060 -34.55640 -31.87016 -29.89793 -29.35682 -26.99481 -26.23140 -23.39825 -22.24229 -21.76794 -21.12713 -19.55135 -18.36808 -17.09591 -16.58341 -16.39510 -16.11372 -15.27897 -14.76085 -14.69530 -14.23389 -14.13672 -13.89783 -13.62741 -13.42748 -13.13866 -12.87161 -12.78000 -12.62059 -12.30025 -11.94747 -11.94280 -11.83446 -11.75232 -11.55394 -11.45402 -11.39771 -11.18423 -10.89235 -10.50096 -10.43082 -8.98791 -8.13860 -6.24736 1.39371 1.40166 1.53363 2.43521 2.86307 3.09771 3.18374 3.69135 3.76384 3.99842 4.06879 4.12264 4.26163 4.35605 4.44406 4.48846 4.57848 4.70741 4.76893 4.82662 4.90320 4.98604 4.99591 5.01931 5.07170 5.08780 5.12046 5.20621 5.22489 5.27524 5.30427 5.45690 5.46955 5.50765 5.59085 5.89118 6.02846 6.32901 6.34869 6.61572 6.95585 7.43584 8.97765 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032866 B = 0.004906 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.747827 B = 5705.958833 C = 6076.142656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.058 0.942 4 C -0.088 4.088 5 C 0.040 3.960 6 C -0.542 4.542 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.659 5.659 15 C 0.028 3.972 16 H 0.099 0.901 17 C -0.175 4.175 18 C -0.122 4.122 19 C -0.090 4.090 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.087 4.087 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.001 0.999 29 H -0.025 1.025 30 H 0.261 0.739 31 H 0.342 0.658 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 0.663 14.557 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.017 4.017 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.290 5.290 15 C -0.082 4.082 16 H 0.117 0.883 17 C -0.213 4.213 18 C -0.123 4.123 19 C -0.128 4.128 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.125 4.125 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.020 0.980 29 H -0.007 1.007 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.746 0.763 14.393 19.240 hybrid contribution 0.180 -0.144 -0.775 0.808 sum -12.566 0.619 13.618 18.540 Atomic orbital electron populations 1.22400 0.95181 1.02458 1.02488 1.21571 0.93423 0.96806 0.89925 0.92323 1.21458 0.96544 0.99070 0.95558 1.18808 0.92214 0.93737 0.94995 1.21851 0.92553 1.34281 1.09364 0.92573 1.25976 0.97397 0.96506 1.00057 1.70142 1.02544 1.45718 1.39052 0.85442 0.78415 0.78277 0.79151 1.18565 1.20385 1.20457 1.60095 1.57455 1.09075 1.02423 1.22457 1.01978 0.96743 0.87064 0.88308 1.23250 0.91704 1.02511 1.03834 1.22217 0.99270 0.96230 0.94616 1.21799 1.00827 0.92573 0.97585 1.22455 0.99895 0.98659 0.94536 1.22333 0.98946 0.94160 0.99994 1.21690 0.98422 0.97695 0.94669 0.91903 0.91578 0.92013 0.93008 0.93424 0.98026 1.00685 0.93058 0.83677 0.90918 0.88280 0.91231 0.93045 0.91638 0.90452 0.90375 0.91059 0.91226 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 9.16 71.98 0.66 -3.62 16 2 C 0.09 3.19 2.48 44.91 0.11 3.30 16 3 H 0.06 2.17 7.74 -2.39 -0.02 2.16 16 4 C -0.09 -3.78 4.83 30.59 0.15 -3.64 16 5 C 0.04 2.22 4.86 29.85 0.15 2.36 16 6 C -0.54 -32.48 9.11 25.60 0.23 -32.24 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 9 N -0.93 -59.60 13.29 21.45 0.28 -59.32 16 10 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 N -0.66 -22.39 5.84 -470.08 -2.74 -25.13 16 15 C 0.03 0.83 5.83 44.80 0.26 1.09 16 16 H 0.10 2.75 7.77 -2.39 -0.02 2.73 16 17 C -0.17 -5.26 10.17 30.52 0.31 -4.95 16 18 C -0.12 -2.96 2.46 -51.98 -0.13 -3.09 16 19 C -0.09 -2.07 5.81 31.57 0.18 -1.88 16 20 C -0.12 -2.07 6.91 31.94 0.22 -1.85 16 21 C -0.12 -1.80 6.84 31.72 0.22 -1.59 16 22 C -0.09 -1.62 6.55 31.23 0.20 -1.42 16 23 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.00 0.08 7.75 -2.39 -0.02 0.06 16 29 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 30 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.34 10.50 7.01 -89.70 -0.63 9.87 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 1.53 7.41 -2.39 -0.02 1.51 16 35 H 0.05 1.37 8.11 -2.39 -0.02 1.35 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.59 326.19 2.93 -64.66 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.33 Total: 18.90 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 3.03 Total: -47.19 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.46 Total: -84.45 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.59 2.93 -64.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.789 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds