Wall clock time and date at job start Thu Apr 9 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47608 * 2 1 4 4 C 1.53006 * 109.47370 * 239.99521 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00167 * 359.72054 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 N 1.46901 * 109.47028 * 119.99628 * 2 1 3 15 15 C 1.46903 * 110.99927 * 274.99919 * 14 2 1 16 16 C 1.53953 * 113.57968 * 252.71946 * 15 14 2 17 17 C 1.52903 * 86.78322 * 220.66483 * 16 15 14 18 18 C 1.52906 * 121.14088 * 150.61667 * 17 16 15 19 19 C 1.53950 * 86.78405 * 100.82163 * 18 17 16 20 20 C 1.52907 * 121.13708 * 259.18296 * 17 16 15 21 21 C 1.52913 * 88.04277 * 24.89954 * 17 16 15 22 22 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47083 * 300.00419 * 1 2 3 24 24 H 1.08994 * 109.46630 * 60.00427 * 1 2 3 25 25 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 26 26 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 27 27 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 28 28 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 29 29 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 30 30 H 1.00907 * 111.00182 * 151.04494 * 14 2 1 31 31 H 1.08994 * 112.82228 * 23.91222 * 15 14 2 32 32 H 1.09000 * 113.66076 * 335.13647 * 16 15 14 33 33 H 1.08995 * 113.66121 * 106.19052 * 16 15 14 34 34 H 1.08998 * 113.66932 * 215.29665 * 18 17 16 35 35 H 1.09000 * 113.65932 * 346.35078 * 18 17 16 36 36 H 1.09003 * 113.57922 * 270.13477 * 19 18 17 37 37 H 1.08996 * 113.57754 * 139.34223 * 19 18 17 38 38 H 1.08997 * 113.66683 * 13.64903 * 20 17 16 39 39 H 1.09005 * 113.66635 * 144.61342 * 20 17 16 40 40 H 1.09004 * 113.66262 * 220.63037 * 21 17 16 41 41 H 1.09002 * 113.66579 * 89.57553 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5443 7 1 3.3691 -1.8074 -3.2112 8 6 5.4184 -1.3595 -2.8161 9 7 6.2690 -0.7748 -2.0011 10 14 6.0409 -2.2389 -4.3420 11 1 6.0905 -1.2840 -5.4782 12 1 7.4025 -2.7731 -4.0846 13 1 5.1249 -3.3589 -4.6763 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3469 16 6 3.5170 0.6199 2.7401 17 6 3.0661 0.4765 4.1941 18 6 4.0514 0.0726 5.2913 19 6 4.1082 1.5640 5.6689 20 6 2.7114 1.7022 5.0365 21 6 1.9843 -0.4890 3.7084 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7716 -1.2054 27 1 3.9995 -1.0729 -0.4258 28 1 3.8533 0.4368 -1.3574 29 1 7.2196 -0.8005 -2.1921 30 1 2.9173 -1.1205 1.0288 31 1 1.4052 1.0711 2.2486 32 1 4.2701 -0.1093 2.4416 33 1 3.7800 1.6405 2.4623 34 1 3.6116 -0.5579 6.0641 35 1 4.9947 -0.3183 4.9099 36 1 4.8832 2.1186 5.1397 37 1 4.1196 1.7414 6.7443 38 1 2.5841 2.6132 4.4516 39 1 1.8937 1.5303 5.7365 40 1 1.0230 -0.3542 4.2042 41 1 2.3067 -1.5300 3.6822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:44 Heat of formation + Delta-G solvation = 15.982260 kcal Electronic energy + Delta-G solvation = -17146.912575 eV Core-core repulsion = 14640.954843 eV Total energy + Delta-G solvation = -2505.957731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33831 -37.00227 -34.41754 -32.78754 -29.91393 -28.67848 -25.75451 -25.55339 -25.11201 -23.37203 -21.42916 -20.28774 -19.52415 -17.81998 -16.33726 -15.61988 -15.48228 -15.20704 -14.51736 -14.40372 -13.73921 -13.09063 -12.67648 -12.50491 -12.48720 -12.15347 -12.03387 -11.94639 -11.63039 -11.35737 -11.14281 -11.01062 -10.90976 -10.85898 -10.46270 -10.34241 -10.06344 -9.95360 -9.77765 -9.55524 -9.25092 -8.99813 -8.34767 -7.83455 -6.00004 -4.01887 3.32219 3.38516 3.42265 4.44998 4.46541 4.51029 4.68555 4.73773 4.82578 5.06529 5.20528 5.35923 5.49691 5.51475 5.61491 5.65509 5.70169 5.79645 5.86646 5.91473 5.99620 6.01283 6.05586 6.11062 6.17883 6.22940 6.40352 6.41367 6.45879 6.54661 6.60459 6.69154 6.95230 7.11718 7.63220 7.64308 7.83422 7.96650 8.02888 8.43692 9.04911 9.62283 11.11192 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025645 B = 0.005412 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.576789 B = 5172.746185 C = 6011.498947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.677 5.677 15 C 0.073 3.927 16 C -0.141 4.141 17 C -0.106 4.106 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.114 4.114 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.015 0.985 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.354 0.646 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 3.857 13.319 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.310 5.310 15 C -0.038 4.038 16 C -0.180 4.180 17 C -0.106 4.106 18 C -0.165 4.165 19 C -0.177 4.177 20 C -0.155 4.155 21 C -0.152 4.152 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.176 0.824 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.820 3.623 13.478 15.998 hybrid contribution 1.305 0.130 -1.061 1.687 sum -6.515 3.753 12.417 14.516 Atomic orbital electron populations 1.21800 0.95917 1.01629 1.00022 1.21601 0.94340 0.96103 0.90724 0.94534 1.21833 0.99661 0.99408 0.94401 1.19116 0.88796 0.96815 0.96832 1.21254 0.91962 1.34109 1.08388 0.92698 1.25016 0.97075 0.95632 0.96670 1.69959 1.02335 1.44276 1.36971 0.86612 0.78134 0.79981 0.83392 1.20718 1.21253 1.19853 1.60567 1.34509 1.31742 1.04210 1.22943 0.95265 0.94641 0.90940 1.23421 0.98628 1.02206 0.93787 1.22312 0.97448 0.96987 0.93871 1.22730 0.99457 0.96204 0.98155 1.22807 0.97571 0.97226 1.00096 1.22635 0.97118 0.97311 0.98390 1.22907 0.97584 0.98947 0.95776 0.92450 0.93881 0.93162 0.92848 0.92543 0.96681 0.96991 0.93071 0.82373 0.89416 0.89239 0.91754 0.90298 0.91427 0.90326 0.91902 0.91631 0.90157 0.91965 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.41 37.16 0.35 -1.70 16 2 C 0.08 1.45 2.50 -67.71 -0.17 1.28 16 3 H 0.04 0.67 7.84 -51.93 -0.41 0.27 16 4 C -0.12 -2.40 4.74 -26.73 -0.13 -2.53 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 N -0.68 -11.52 6.43 -98.71 -0.63 -12.16 16 15 C 0.07 1.07 3.88 -66.73 -0.26 0.81 16 16 C -0.14 -2.06 7.46 -26.28 -0.20 -2.26 16 17 C -0.11 -1.29 1.11 -154.72 -0.17 -1.46 16 18 C -0.13 -1.43 7.84 -26.28 -0.21 -1.64 16 19 C -0.14 -1.43 8.08 -25.75 -0.21 -1.64 16 20 C -0.12 -1.24 7.84 -26.28 -0.21 -1.45 16 21 C -0.11 -1.47 7.64 -26.28 -0.20 -1.67 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.02 0.40 6.43 -51.93 -0.33 0.07 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.35 6.70 5.93 -39.29 -0.23 6.47 16 31 H 0.09 1.26 7.48 -51.93 -0.39 0.87 16 32 H 0.09 1.45 7.82 -51.93 -0.41 1.04 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -28.81 323.72 -9.61 -38.42 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.63 Total: 3.57 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -1.94 Total: -25.35 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.10 Total: -38.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.81 -9.61 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.406 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds