Wall clock time and date at job start Thu Apr 9 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47608 * 2 1 4 4 C 1.53006 * 109.47370 * 239.99521 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00167 * 359.72054 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 N 1.46901 * 109.47028 * 119.99628 * 2 1 3 15 15 C 1.46903 * 110.99927 * 274.99919 * 14 2 1 16 16 C 1.53953 * 113.57968 * 252.71946 * 15 14 2 17 17 C 1.52903 * 86.78322 * 220.66483 * 16 15 14 18 18 C 1.52906 * 121.14088 * 150.61667 * 17 16 15 19 19 C 1.53950 * 86.78405 * 100.82163 * 18 17 16 20 20 C 1.52907 * 121.13708 * 259.18296 * 17 16 15 21 21 C 1.52913 * 88.04277 * 24.89954 * 17 16 15 22 22 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47083 * 300.00419 * 1 2 3 24 24 H 1.08994 * 109.46630 * 60.00427 * 1 2 3 25 25 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 26 26 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 27 27 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 28 28 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 29 29 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 30 30 H 1.00907 * 111.00182 * 151.04494 * 14 2 1 31 31 H 1.08994 * 112.82228 * 23.91222 * 15 14 2 32 32 H 1.09000 * 113.66076 * 335.13647 * 16 15 14 33 33 H 1.08995 * 113.66121 * 106.19052 * 16 15 14 34 34 H 1.08998 * 113.66932 * 215.29665 * 18 17 16 35 35 H 1.09000 * 113.65932 * 346.35078 * 18 17 16 36 36 H 1.09003 * 113.57922 * 270.13477 * 19 18 17 37 37 H 1.08996 * 113.57754 * 139.34223 * 19 18 17 38 38 H 1.08997 * 113.66683 * 13.64903 * 20 17 16 39 39 H 1.09005 * 113.66635 * 144.61342 * 20 17 16 40 40 H 1.09004 * 113.66262 * 220.63037 * 21 17 16 41 41 H 1.09002 * 113.66579 * 89.57553 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5443 7 1 3.3691 -1.8074 -3.2112 8 6 5.4184 -1.3595 -2.8161 9 7 6.2690 -0.7748 -2.0011 10 14 6.0409 -2.2389 -4.3420 11 1 6.0905 -1.2840 -5.4782 12 1 7.4025 -2.7731 -4.0846 13 1 5.1249 -3.3589 -4.6763 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3469 16 6 3.5170 0.6199 2.7401 17 6 3.0661 0.4765 4.1941 18 6 4.0514 0.0726 5.2913 19 6 4.1082 1.5640 5.6689 20 6 2.7114 1.7022 5.0365 21 6 1.9843 -0.4890 3.7084 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7716 -1.2054 27 1 3.9995 -1.0729 -0.4258 28 1 3.8533 0.4368 -1.3574 29 1 7.2196 -0.8005 -2.1921 30 1 2.9173 -1.1205 1.0288 31 1 1.4052 1.0711 2.2486 32 1 4.2701 -0.1093 2.4416 33 1 3.7800 1.6405 2.4623 34 1 3.6116 -0.5579 6.0641 35 1 4.9947 -0.3183 4.9099 36 1 4.8832 2.1186 5.1397 37 1 4.1196 1.7414 6.7443 38 1 2.5841 2.6132 4.4516 39 1 1.8937 1.5303 5.7365 40 1 1.0230 -0.3542 4.2042 41 1 2.3067 -1.5300 3.6822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:44 Heat of formation + Delta-G solvation = 0.551182 kcal Electronic energy + Delta-G solvation = -17147.581716 eV Core-core repulsion = 14640.954843 eV Total energy + Delta-G solvation = -2506.626873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38238 -38.37960 -35.83048 -34.69718 -31.73290 -30.02406 -27.06387 -26.68369 -26.61244 -24.46251 -23.22436 -21.41177 -21.09763 -18.84952 -18.46669 -16.95722 -16.59365 -16.55756 -16.17301 -15.66786 -15.08880 -14.66353 -14.39613 -13.75687 -13.69628 -13.64524 -13.20232 -13.04651 -12.99514 -12.93620 -12.83728 -12.54412 -12.35908 -12.15980 -11.88735 -11.77204 -11.56607 -11.32070 -11.06836 -10.98876 -10.95252 -10.59905 -10.55118 -9.20371 -8.21136 -6.31877 1.38717 1.39739 1.51077 2.39946 3.11758 3.26100 3.52006 3.57802 3.75591 3.93880 3.98754 4.03710 4.17343 4.32057 4.43046 4.51582 4.58729 4.77898 4.78466 4.82649 4.85967 4.92563 4.96352 5.01340 5.04906 5.08121 5.09566 5.12793 5.13908 5.23250 5.40423 5.44608 5.52640 5.55749 5.61512 5.72351 5.83446 6.24522 6.34870 6.47730 6.84677 7.37373 8.90203 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025645 B = 0.005412 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.576789 B = 5172.746185 C = 6011.498947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.086 3.914 3 H 0.025 0.975 4 C -0.103 4.103 5 C 0.030 3.970 6 C -0.544 4.544 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.678 5.678 15 C 0.069 3.931 16 C -0.149 4.149 17 C -0.103 4.103 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.104 4.104 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.054 0.946 27 H -0.003 1.003 28 H -0.018 1.018 29 H 0.263 0.737 30 H 0.338 0.662 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 3.747 13.903 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.044 0.956 4 C -0.141 4.141 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.188 1.188 14 N -0.310 5.310 15 C -0.042 4.042 16 C -0.188 4.188 17 C -0.103 4.103 18 C -0.167 4.167 19 C -0.173 4.173 20 C -0.148 4.148 21 C -0.142 4.142 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.000 1.000 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.149 3.520 14.069 17.148 hybrid contribution 1.747 0.185 -1.236 2.148 sum -7.402 3.704 12.833 15.271 Atomic orbital electron populations 1.21710 0.93140 1.02118 1.01461 1.21548 0.96380 0.94869 0.89568 0.95647 1.21659 0.96181 0.99806 0.96420 1.18975 0.92108 0.94324 0.95349 1.21701 0.92591 1.34489 1.09365 0.92386 1.25944 0.97316 0.96318 1.00019 1.70092 1.02713 1.45465 1.38930 0.85483 0.77604 0.78971 0.79216 1.19817 1.20737 1.18778 1.60698 1.33420 1.32284 1.04587 1.23100 0.95253 0.94905 0.90911 1.23361 0.98138 1.00860 0.96440 1.22295 0.97344 0.98024 0.92674 1.22788 0.98611 0.97283 0.98045 1.22789 0.97200 0.96105 1.01237 1.22668 0.97879 0.96108 0.98096 1.22818 0.98676 0.98355 0.94391 0.92385 0.92205 0.91991 0.92517 0.92723 0.98430 0.99956 0.92867 0.84141 0.88560 0.91824 0.92607 0.88703 0.92776 0.91168 0.89946 0.91734 0.88194 0.90113 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.41 71.98 0.68 -2.89 16 2 C 0.09 3.03 2.50 44.92 0.11 3.14 16 3 H 0.03 0.95 7.84 -2.39 -0.02 0.93 16 4 C -0.10 -4.34 4.74 30.60 0.15 -4.20 16 5 C 0.03 1.58 4.80 29.85 0.14 1.72 16 6 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 8 C 0.00 0.11 5.46 84.66 0.46 0.57 16 9 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 14 N -0.68 -23.35 6.43 -466.20 -3.00 -26.34 16 15 C 0.07 2.00 3.88 45.55 0.18 2.17 16 16 C -0.15 -4.50 7.46 30.88 0.23 -4.27 16 17 C -0.10 -2.41 1.11 -52.32 -0.06 -2.47 16 18 C -0.13 -2.76 7.84 30.88 0.24 -2.52 16 19 C -0.14 -2.55 8.08 31.23 0.25 -2.29 16 20 C -0.11 -2.09 7.84 30.89 0.24 -1.85 16 21 C -0.10 -2.56 7.64 30.89 0.24 -2.32 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.50 7.73 -2.39 -0.02 1.48 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.00 -0.14 6.43 -2.39 -0.02 -0.16 16 28 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.34 13.43 5.93 -89.69 -0.53 12.90 16 31 H 0.10 2.64 7.48 -2.39 -0.02 2.62 16 32 H 0.06 2.23 7.82 -2.39 -0.02 2.21 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -62.27 323.72 2.85 -59.42 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.43 Total: 23.36 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 3.09 Total: -46.40 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.71 Total: -83.22 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.27 2.85 -59.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.975 kcal (2) G-P(sol) polarization free energy of solvation -62.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds