Wall clock time and date at job start Thu Apr 9 2020 12:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 C 1.53000 * 109.47202 * 119.99765 * 2 1 3 5 5 C 1.52998 * 109.47515 * 185.00557 * 4 2 1 6 6 C 1.50699 * 109.47225 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00081 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99648 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00266 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99823 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46936 * 60.00368 * 10 8 6 12 12 H 1.48495 * 109.47628 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47320 * 300.00766 * 10 8 6 14 14 N 1.46894 * 109.47320 * 240.00251 * 2 1 3 15 15 C 1.46896 * 111.00338 * 85.00073 * 14 2 1 16 16 C 1.53957 * 113.57955 * 154.99923 * 15 14 2 17 17 C 1.52917 * 86.77928 * 139.33592 * 16 15 14 18 18 C 1.52909 * 121.13628 * 209.37844 * 17 16 15 19 19 C 1.53953 * 86.78371 * 209.38430 * 18 17 16 20 20 C 1.52913 * 121.13439 * 100.82109 * 17 16 15 21 21 C 1.52908 * 88.04257 * 335.09974 * 17 16 15 22 22 H 1.08998 * 109.47418 * 300.00127 * 1 2 3 23 23 H 1.09000 * 109.47158 * 60.00518 * 1 2 3 24 24 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47029 * 305.00549 * 4 2 1 26 26 H 1.09002 * 109.47087 * 65.00057 * 4 2 1 27 27 H 1.09009 * 109.46554 * 300.00364 * 5 4 2 28 28 H 1.08992 * 109.47284 * 59.99691 * 5 4 2 29 29 H 0.97001 * 119.99913 * 179.97438 * 9 8 6 30 30 H 1.00901 * 111.00386 * 321.04006 * 14 2 1 31 31 H 1.08993 * 112.87942 * 23.85731 * 15 14 2 32 32 H 1.08997 * 113.66354 * 24.86769 * 16 15 14 33 33 H 1.09002 * 113.65722 * 253.80500 * 16 15 14 34 34 H 1.08999 * 113.66171 * 323.85680 * 18 17 16 35 35 H 1.09001 * 113.66245 * 94.90575 * 18 17 16 36 36 H 1.09002 * 113.57283 * 270.13457 * 19 18 17 37 37 H 1.08991 * 113.58142 * 139.33990 * 19 18 17 38 38 H 1.09003 * 113.65654 * 265.08368 * 20 17 16 39 39 H 1.08997 * 113.66584 * 36.05209 * 20 17 16 40 40 H 1.09000 * 113.66198 * 139.37306 * 21 17 16 41 41 H 1.09001 * 113.66109 * 270.42748 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0671 -1.3241 2.5440 7 1 3.3686 -1.8045 3.2131 8 6 5.4184 -1.3611 2.8152 9 7 6.2689 -0.7756 2.0007 10 14 6.0411 -2.2417 4.3405 11 1 5.6478 -3.6724 4.2812 12 1 7.5210 -2.1369 4.4031 13 1 5.4493 -1.6154 5.5499 14 7 2.0197 -0.6924 -1.1994 15 6 2.0825 0.2226 -2.3468 16 6 3.1046 -0.2012 -3.4173 17 6 2.0625 0.2181 -4.4548 18 6 1.9955 -0.4564 -5.8255 19 6 1.4486 0.8799 -6.3599 20 6 2.1637 1.5611 -5.1789 21 6 0.9863 -0.0310 -3.3975 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6053 -0.2617 2.1370 26 1 1.7517 -1.7715 1.2056 27 1 3.9995 -1.0727 0.4260 28 1 3.8531 0.4370 1.3575 29 1 7.2196 -0.8014 2.1918 30 1 1.4497 -1.4979 -1.4100 31 1 2.1693 1.2680 -2.0509 32 1 3.3183 -1.2700 -3.4192 33 1 4.0054 0.4125 -3.4293 34 1 2.9719 -0.7226 -6.2302 35 1 1.2771 -1.2746 -5.8758 36 1 0.3622 0.9557 -6.3143 37 1 1.8523 1.1581 -7.3333 38 1 1.5795 2.3545 -4.7127 39 1 3.1874 1.8627 -5.4005 40 1 0.1949 0.7185 -3.3938 41 1 0.6047 -1.0520 -3.3939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:46 Heat of formation + Delta-G solvation = 18.878976 kcal Electronic energy + Delta-G solvation = -17033.375113 eV Core-core repulsion = 14527.542993 eV Total energy + Delta-G solvation = -2505.832120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41799 -37.02448 -34.41310 -32.72519 -30.00615 -28.42457 -25.82400 -25.68499 -24.96478 -23.43654 -21.32567 -20.54771 -19.66294 -17.85358 -16.06478 -15.70935 -15.48532 -15.31881 -14.45424 -14.09255 -13.73990 -13.27952 -12.75664 -12.62459 -12.39048 -12.25763 -12.10372 -12.00752 -11.74271 -11.41673 -11.10646 -11.04592 -10.90742 -10.79092 -10.43617 -10.32263 -10.13637 -10.01887 -9.62018 -9.52441 -9.13954 -8.84810 -8.18649 -7.75744 -5.84182 -3.85312 3.41147 3.45160 3.47799 4.36792 4.43405 4.57481 4.61992 4.64251 4.74011 5.00531 5.14162 5.37497 5.40748 5.50979 5.53591 5.58088 5.64956 5.67838 5.73183 5.77970 5.80938 5.89137 5.92579 6.03038 6.14657 6.23415 6.31172 6.35710 6.43549 6.50191 6.56408 6.77045 6.95139 7.37789 7.64555 7.89047 7.91765 8.13497 8.29106 8.62435 9.23812 9.76971 11.26848 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.004692 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.857737 B = 5966.617300 C = 6520.048831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.660 5.660 15 C 0.077 3.923 16 C -0.114 4.114 17 C -0.106 4.106 18 C -0.127 4.127 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.142 4.142 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.006 0.994 29 H 0.258 0.742 30 H 0.336 0.664 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 3.151 -14.648 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.288 5.288 15 C -0.034 4.034 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.164 4.164 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.182 4.182 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.289 3.260 -14.475 18.056 hybrid contribution -0.549 -0.380 0.643 0.927 sum -10.838 2.880 -13.833 17.807 Atomic orbital electron populations 1.22569 0.98688 1.01391 1.01149 1.21801 0.90866 0.98194 0.91743 0.91160 1.21636 1.00602 0.98320 0.93142 1.18987 0.88327 0.96430 0.96977 1.21330 0.91834 1.34048 1.08523 0.93204 1.24992 0.97128 0.95801 0.96474 1.69971 1.02166 1.44376 1.36968 0.86751 0.77563 0.80299 0.83883 1.20385 1.21410 1.20449 1.60425 1.57045 1.08533 1.02813 1.22986 0.94812 0.96793 0.88839 1.22924 0.96774 1.01946 0.93630 1.22315 0.98674 0.96987 0.92709 1.22727 1.01106 0.96548 0.96034 1.22812 1.00005 0.97126 0.97802 1.22640 1.00868 0.95631 0.96301 1.23458 0.96677 1.01398 0.96633 0.92491 0.93701 0.92933 0.93672 0.93578 0.94893 0.97553 0.93228 0.84494 0.89121 0.89558 0.91430 0.90095 0.91766 0.90588 0.91827 0.91658 0.89866 0.92052 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.16 37.16 0.34 -2.13 16 2 C 0.08 1.43 2.58 -67.72 -0.17 1.26 16 3 H 0.07 1.27 7.47 -51.93 -0.39 0.88 16 4 C -0.10 -2.10 4.83 -26.73 -0.13 -2.23 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 7 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 10 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.66 -10.81 5.82 -98.72 -0.57 -11.38 16 15 C 0.08 1.08 4.00 -66.73 -0.27 0.81 16 16 C -0.11 -1.56 7.64 -26.28 -0.20 -1.77 16 17 C -0.11 -1.18 1.11 -154.71 -0.17 -1.36 16 18 C -0.13 -1.26 7.84 -26.28 -0.21 -1.46 16 19 C -0.14 -1.26 8.08 -25.75 -0.21 -1.47 16 20 C -0.12 -1.18 7.84 -26.28 -0.21 -1.38 16 21 C -0.14 -1.63 7.45 -26.28 -0.20 -1.83 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 24 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 25 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.03 0.95 7.75 -51.92 -0.40 0.55 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.34 5.03 7.93 -39.29 -0.31 4.72 16 31 H 0.09 1.33 7.48 -51.93 -0.39 0.94 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -30.64 326.47 -9.68 -40.32 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.77 Total: 0.83 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -1.97 Total: -24.89 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.16 Total: -38.49 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.64 -9.68 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.199 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds