Wall clock time and date at job start Thu Apr 9 2020 12:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47155 * 2 1 4 4 C 1.52996 * 109.47236 * 120.00538 * 2 1 3 5 5 C 1.53004 * 109.46600 * 294.58953 * 4 2 1 6 6 C 1.50704 * 109.46963 * 182.13382 * 5 4 2 7 7 H 1.08002 * 119.99746 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00247 * 180.27667 * 6 5 4 9 9 N 1.31515 * 119.99774 * 359.72232 * 8 6 5 10 10 Si 1.86796 * 120.00188 * 179.72682 * 8 6 5 11 11 H 1.48505 * 109.47018 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47349 * 119.99720 * 10 8 6 13 13 H 1.48497 * 109.46978 * 239.99708 * 10 8 6 14 14 N 1.46902 * 109.46876 * 240.00490 * 2 1 3 15 15 C 1.48525 * 111.00023 * 174.36451 * 14 2 1 16 16 C 1.54320 * 104.67400 * 200.80414 * 15 14 2 17 17 H 1.09005 * 111.82249 * 262.42417 * 16 15 14 18 18 C 1.54167 * 109.65200 * 137.83617 * 16 15 14 19 19 C 1.54838 * 104.32471 * 223.30786 * 18 16 15 20 20 C 1.57302 * 102.81726 * 38.44318 * 19 18 16 21 21 C 1.54164 * 103.16354 * 321.57000 * 20 19 18 22 22 H 1.09004 * 111.80032 * 261.10461 * 21 20 19 23 23 C 1.48525 * 111.00402 * 58.95344 * 14 2 1 24 24 H 1.09000 * 109.47075 * 299.99964 * 1 2 3 25 25 H 1.09007 * 109.47195 * 59.99928 * 1 2 3 26 26 H 1.09001 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47124 * 174.59494 * 4 2 1 28 28 H 1.08998 * 109.47481 * 54.58383 * 4 2 1 29 29 H 1.09000 * 109.47209 * 62.13654 * 5 4 2 30 30 H 1.08999 * 109.47465 * 302.13516 * 5 4 2 31 31 H 0.96996 * 120.00106 * 180.02562 * 9 8 6 32 32 H 1.09004 * 110.39792 * 319.60305 * 15 14 2 33 33 H 1.09001 * 110.40385 * 82.00309 * 15 14 2 34 34 H 1.09001 * 110.46075 * 342.02236 * 18 16 15 35 35 H 1.09003 * 110.46183 * 104.59955 * 18 16 15 36 36 H 1.09003 * 110.75716 * 156.49149 * 19 18 16 37 37 H 1.09001 * 110.76068 * 279.87334 * 19 18 16 38 38 H 1.08996 * 110.38415 * 203.54558 * 20 19 18 39 39 H 1.09000 * 111.64712 * 80.19733 * 20 19 18 40 40 H 1.09000 * 110.40159 * 277.99102 * 23 14 2 41 41 H 1.08998 * 110.39871 * 40.39611 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6441 0.0741 2.4947 6 6 2.1913 -0.6086 3.7217 7 1 2.7639 -1.5190 3.6230 8 6 1.9558 -0.0743 4.9708 9 7 1.2582 1.0340 5.0910 10 14 2.6276 -0.9247 6.4922 11 1 3.3721 -2.1449 6.0892 12 1 3.5415 -0.0019 7.2122 13 1 1.5029 -1.3037 7.3847 14 7 2.0196 -0.6924 -1.1995 15 6 3.4980 -0.5954 -1.3039 16 6 3.8030 -0.8611 -2.7931 17 1 4.0914 -1.8975 -2.9691 18 6 4.8815 0.1245 -3.2854 19 6 4.3717 0.5892 -4.6716 20 6 2.8194 0.7132 -4.4489 21 6 2.4979 -0.4899 -3.5403 22 1 2.1013 -1.3316 -4.1082 23 6 1.5229 -0.0337 -2.4345 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1257 -0.8059 1.2020 28 1 1.5997 -1.7172 1.2989 29 1 0.5574 0.1264 2.5622 30 1 2.0528 1.0823 2.4271 31 1 1.0928 1.4101 5.9697 32 1 3.8344 0.4016 -1.0192 33 1 3.9735 -1.3507 -0.6781 34 1 4.9619 0.9722 -2.6050 35 1 5.8429 -0.3800 -3.3825 36 1 4.7979 1.5572 -4.9353 37 1 4.5974 -0.1547 -5.4356 38 1 2.2915 0.6254 -5.3984 39 1 2.5579 1.6472 -3.9514 40 1 0.5096 -0.3655 -2.6609 41 1 1.5529 1.0504 -2.3253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:53 Heat of formation + Delta-G solvation = -24.828050 kcal Electronic energy + Delta-G solvation = -17336.488656 eV Core-core repulsion = 14828.761257 eV Total energy + Delta-G solvation = -2507.727399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.92192 -36.49777 -33.60794 -32.00299 -30.60655 -29.19438 -27.44993 -25.87622 -24.61386 -22.47076 -21.17974 -20.65542 -19.09560 -18.87661 -16.60527 -16.26181 -15.16953 -14.83358 -14.52253 -14.27141 -14.00422 -13.48679 -12.79922 -12.67581 -12.29740 -12.12399 -11.90230 -11.70766 -11.28895 -11.17294 -11.02933 -10.96191 -10.80916 -10.73474 -10.65284 -10.51021 -10.45575 -10.35595 -10.13483 -9.56629 -9.23461 -8.96551 -8.30325 -8.08656 -5.96349 -3.97839 3.33307 3.40657 3.45385 4.21687 4.36770 4.49629 4.55297 4.72805 5.18119 5.21233 5.25282 5.39525 5.42539 5.45566 5.48678 5.54674 5.61380 5.70133 5.75306 5.84302 5.91118 5.94979 6.00287 6.02946 6.10625 6.22729 6.28269 6.33422 6.39560 6.49285 6.67512 6.78296 6.82333 7.13680 7.28779 7.52103 7.73906 7.89497 8.04817 8.48827 9.09653 9.65902 11.15149 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.042175 B = 0.004743 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.748439 B = 5902.314493 C = 6252.283818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.036 0.964 4 C -0.099 4.099 5 C 0.022 3.978 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.508 5.508 15 C 0.040 3.960 16 C -0.092 4.092 17 H 0.082 0.918 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.094 4.094 22 H 0.081 0.919 23 C 0.037 3.963 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.020 0.980 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -0.902 -18.836 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 H 0.054 0.946 4 C -0.137 4.137 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.232 5.232 15 C -0.088 4.088 16 C -0.111 4.111 17 H 0.100 0.900 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.113 4.113 22 H 0.099 0.901 23 C -0.091 4.091 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.241 -1.335 -18.633 18.960 hybrid contribution 0.556 0.499 0.972 1.225 sum 3.796 -0.837 -17.662 18.085 Atomic orbital electron populations 1.21857 0.94715 1.02069 1.01212 1.21973 0.95623 0.95512 0.90591 0.94638 1.21656 0.99347 0.99419 0.93288 1.19140 0.96896 0.94911 0.90630 1.21310 1.33256 1.09567 0.91357 0.92703 1.25018 0.95345 0.95040 0.99090 1.69976 1.40120 1.20154 1.23409 0.86562 0.78762 0.79647 0.83206 1.19733 1.21079 1.21035 1.65459 1.05613 1.50550 1.01557 1.23195 0.89696 1.00521 0.95417 1.22498 0.94417 0.99418 0.94770 0.89976 1.22473 0.97978 0.98750 0.96656 1.22907 0.95332 1.00707 0.97149 1.22927 0.95790 0.97928 0.99183 1.22514 0.95405 0.97649 0.95758 0.90050 1.23231 0.98833 0.96693 0.90362 0.91203 0.94043 0.92297 0.93520 0.92739 0.96214 0.97018 0.93148 0.93785 0.90209 0.91427 0.91738 0.91916 0.91573 0.91854 0.91352 0.90702 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.78 37.16 0.33 -2.10 16 2 C 0.07 1.30 1.91 -67.71 -0.13 1.17 16 3 H 0.04 0.68 7.96 -51.93 -0.41 0.27 16 4 C -0.10 -2.15 4.69 -26.73 -0.13 -2.27 16 5 C 0.02 0.57 4.68 -27.88 -0.13 0.44 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 N -0.51 -8.10 5.20 -222.16 -1.15 -9.25 16 15 C 0.04 0.58 5.13 -2.23 -0.01 0.57 16 16 C -0.09 -1.08 3.88 -88.32 -0.34 -1.42 16 17 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.12 -1.23 6.39 -25.15 -0.16 -1.39 16 19 C -0.12 -1.10 6.97 -23.42 -0.16 -1.26 16 20 C -0.12 -1.16 6.55 -23.78 -0.16 -1.31 16 21 C -0.09 -1.06 3.86 -88.32 -0.34 -1.40 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 23 C 0.04 0.49 4.83 -2.23 -0.01 0.48 16 24 H 0.07 1.30 6.63 -51.93 -0.34 0.96 16 25 H 0.04 0.61 6.91 -51.93 -0.36 0.25 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.00 6.85 -51.93 -0.36 0.65 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.02 0.54 6.68 -51.93 -0.35 0.19 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.04 0.67 7.00 -51.93 -0.36 0.31 16 33 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 34 H 0.07 0.74 7.25 -51.93 -0.38 0.36 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.69 7.18 -51.93 -0.37 0.32 16 40 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 41 H 0.04 0.56 7.04 -51.93 -0.37 0.20 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -29.99 309.64 -9.86 -39.85 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.43 Total: -3.44 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -1.66 Total: -22.23 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.42 Total: -35.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.99 -9.86 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.024 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds