Wall clock time and date at job start Thu Apr 9 2020 12:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47155 * 2 1 4 4 C 1.52996 * 109.47236 * 120.00538 * 2 1 3 5 5 C 1.53004 * 109.46600 * 294.58953 * 4 2 1 6 6 C 1.50704 * 109.46963 * 182.13382 * 5 4 2 7 7 H 1.08002 * 119.99746 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00247 * 180.27667 * 6 5 4 9 9 N 1.31515 * 119.99774 * 359.72232 * 8 6 5 10 10 Si 1.86796 * 120.00188 * 179.72682 * 8 6 5 11 11 H 1.48505 * 109.47018 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47349 * 119.99720 * 10 8 6 13 13 H 1.48497 * 109.46978 * 239.99708 * 10 8 6 14 14 N 1.46902 * 109.46876 * 240.00490 * 2 1 3 15 15 C 1.48525 * 111.00023 * 174.36451 * 14 2 1 16 16 C 1.54320 * 104.67400 * 200.80414 * 15 14 2 17 17 H 1.09005 * 111.82249 * 262.42417 * 16 15 14 18 18 C 1.54167 * 109.65200 * 137.83617 * 16 15 14 19 19 C 1.54838 * 104.32471 * 223.30786 * 18 16 15 20 20 C 1.57302 * 102.81726 * 38.44318 * 19 18 16 21 21 C 1.54164 * 103.16354 * 321.57000 * 20 19 18 22 22 H 1.09004 * 111.80032 * 261.10461 * 21 20 19 23 23 C 1.48525 * 111.00402 * 58.95344 * 14 2 1 24 24 H 1.09000 * 109.47075 * 299.99964 * 1 2 3 25 25 H 1.09007 * 109.47195 * 59.99928 * 1 2 3 26 26 H 1.09001 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47124 * 174.59494 * 4 2 1 28 28 H 1.08998 * 109.47481 * 54.58383 * 4 2 1 29 29 H 1.09000 * 109.47209 * 62.13654 * 5 4 2 30 30 H 1.08999 * 109.47465 * 302.13516 * 5 4 2 31 31 H 0.96996 * 120.00106 * 180.02562 * 9 8 6 32 32 H 1.09004 * 110.39792 * 319.60305 * 15 14 2 33 33 H 1.09001 * 110.40385 * 82.00309 * 15 14 2 34 34 H 1.09001 * 110.46075 * 342.02236 * 18 16 15 35 35 H 1.09003 * 110.46183 * 104.59955 * 18 16 15 36 36 H 1.09003 * 110.75716 * 156.49149 * 19 18 16 37 37 H 1.09001 * 110.76068 * 279.87334 * 19 18 16 38 38 H 1.08996 * 110.38415 * 203.54558 * 20 19 18 39 39 H 1.09000 * 111.64712 * 80.19733 * 20 19 18 40 40 H 1.09000 * 110.40159 * 277.99102 * 23 14 2 41 41 H 1.08998 * 110.39871 * 40.39611 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6441 0.0741 2.4947 6 6 2.1913 -0.6086 3.7217 7 1 2.7639 -1.5190 3.6230 8 6 1.9558 -0.0743 4.9708 9 7 1.2582 1.0340 5.0910 10 14 2.6276 -0.9247 6.4922 11 1 3.3721 -2.1449 6.0892 12 1 3.5415 -0.0019 7.2122 13 1 1.5029 -1.3037 7.3847 14 7 2.0196 -0.6924 -1.1995 15 6 3.4980 -0.5954 -1.3039 16 6 3.8030 -0.8611 -2.7931 17 1 4.0914 -1.8975 -2.9691 18 6 4.8815 0.1245 -3.2854 19 6 4.3717 0.5892 -4.6716 20 6 2.8194 0.7132 -4.4489 21 6 2.4979 -0.4899 -3.5403 22 1 2.1013 -1.3316 -4.1082 23 6 1.5229 -0.0337 -2.4345 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1257 -0.8059 1.2020 28 1 1.5997 -1.7172 1.2989 29 1 0.5574 0.1264 2.5622 30 1 2.0528 1.0823 2.4271 31 1 1.0928 1.4101 5.9697 32 1 3.8344 0.4016 -1.0192 33 1 3.9735 -1.3507 -0.6781 34 1 4.9619 0.9722 -2.6050 35 1 5.8429 -0.3800 -3.3825 36 1 4.7979 1.5572 -4.9353 37 1 4.5974 -0.1547 -5.4356 38 1 2.2915 0.6254 -5.3984 39 1 2.5579 1.6472 -3.9514 40 1 0.5096 -0.3655 -2.6609 41 1 1.5529 1.0504 -2.3253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:53 Heat of formation + Delta-G solvation = -42.063386 kcal Electronic energy + Delta-G solvation = -17337.236036 eV Core-core repulsion = 14828.761257 eV Total energy + Delta-G solvation = -2508.474779 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98958 -37.82430 -35.45309 -33.70005 -31.62659 -30.82696 -28.58563 -27.41107 -26.07039 -24.04825 -22.45597 -21.80337 -20.53689 -19.87948 -18.53276 -17.52472 -16.59478 -16.29366 -16.02766 -15.54599 -15.25931 -14.68791 -14.28591 -14.20120 -13.94951 -13.34617 -13.23073 -13.06600 -12.93487 -12.87685 -12.50948 -12.33391 -11.96461 -11.91328 -11.88145 -11.64626 -11.55595 -11.49872 -11.40338 -11.33323 -11.20194 -10.97944 -10.55073 -9.38390 -8.21063 -6.31918 1.38603 1.38967 1.52654 2.40014 3.02959 3.11910 3.48780 3.58972 3.80389 4.07290 4.09270 4.23274 4.38849 4.45401 4.48739 4.49616 4.53579 4.62964 4.72412 4.77662 4.80786 4.93248 4.95800 4.97123 4.99077 5.05275 5.08160 5.15540 5.17786 5.23055 5.30672 5.35442 5.49101 5.50812 5.51556 5.74484 5.84496 5.99267 6.11278 6.28101 6.84646 7.37116 8.91039 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.042175 B = 0.004743 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.748439 B = 5902.314493 C = 6252.283818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.022 0.978 4 C -0.084 4.084 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.276 1.276 14 N -0.515 5.515 15 C 0.035 3.965 16 C -0.088 4.088 17 H 0.089 0.911 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.090 4.090 22 H 0.093 0.907 23 C 0.035 3.965 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.001 0.999 30 H -0.015 1.015 31 H 0.264 0.736 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -1.767 -20.235 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 H 0.040 0.960 4 C -0.122 4.122 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.202 1.202 14 N -0.239 5.239 15 C -0.093 4.093 16 C -0.107 4.107 17 H 0.107 0.893 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.109 4.109 22 H 0.111 0.889 23 C -0.093 4.093 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.003 0.997 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.864 -2.203 -20.053 20.540 hybrid contribution 0.353 0.788 1.402 1.647 sum 4.217 -1.415 -18.650 19.173 Atomic orbital electron populations 1.21773 0.93795 1.02216 1.01402 1.21724 0.96299 0.94384 0.90486 0.95983 1.21410 0.99103 0.98639 0.93090 1.19001 0.95355 0.94020 0.92464 1.21714 1.33728 1.09952 0.92702 0.92581 1.25963 0.95417 0.95662 1.02645 1.70101 1.41088 1.21579 1.24552 0.85405 0.78292 0.78723 0.78678 1.18739 1.20245 1.20168 1.65414 1.06509 1.50433 1.01520 1.23247 0.88858 0.99488 0.97665 1.22504 0.95434 1.00321 0.92443 0.89254 1.22464 0.98085 0.98000 0.97278 1.22901 0.94583 1.01590 0.96433 1.22915 0.96573 0.96642 0.99442 1.22541 0.94282 0.98768 0.95277 0.88905 1.23339 0.99856 0.96402 0.89690 0.93410 0.91407 0.92109 0.93817 0.93158 0.98082 0.99706 0.92749 0.94939 0.91421 0.92668 0.90615 0.91021 0.90198 0.90116 0.92132 0.89943 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.78 71.98 0.63 -4.01 16 2 C 0.08 2.97 1.91 44.91 0.09 3.05 16 3 H 0.02 0.88 7.96 -2.39 -0.02 0.86 16 4 C -0.08 -3.77 4.69 30.59 0.14 -3.62 16 5 C 0.03 1.60 4.68 29.85 0.14 1.74 16 6 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 0.04 5.46 84.65 0.46 0.51 16 9 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 10 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 N -0.51 -16.19 5.20 -856.79 -4.45 -20.65 16 15 C 0.04 1.03 5.13 86.44 0.44 1.47 16 16 C -0.09 -1.92 3.88 -9.30 -0.04 -1.96 16 17 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 18 C -0.12 -2.23 6.39 31.62 0.20 -2.03 16 19 C -0.12 -1.75 6.97 32.74 0.23 -1.53 16 20 C -0.12 -1.94 6.55 32.50 0.21 -1.73 16 21 C -0.09 -1.81 3.86 -9.30 -0.04 -1.84 16 22 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 23 C 0.03 0.87 4.83 86.44 0.42 1.29 16 24 H 0.05 1.84 6.63 -2.39 -0.02 1.83 16 25 H 0.07 1.95 6.91 -2.38 -0.02 1.94 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.94 6.85 -2.39 -0.02 1.92 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.00 0.05 6.68 -2.39 -0.02 0.03 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.03 1.01 7.00 -2.38 -0.02 1.00 16 33 H 0.07 2.10 7.57 -2.39 -0.02 2.08 16 34 H 0.05 1.16 7.25 -2.39 -0.02 1.14 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.10 7.18 -2.39 -0.02 1.09 16 40 H 0.08 1.95 7.66 -2.39 -0.02 1.93 16 41 H 0.04 0.99 7.04 -2.39 -0.02 0.98 16 Total: -1.00 -64.74 309.64 1.95 -62.79 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.96 Total: 8.63 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 3.13 Total: -40.52 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -4.17 Total: -78.23 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -64.74 1.95 -62.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.727 kcal (2) G-P(sol) polarization free energy of solvation -64.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds