Wall clock time and date at job start Thu Apr 9 2020 12:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 C 1.52998 * 109.46778 * 240.00265 * 2 1 3 5 5 C 1.52998 * 109.47208 * 65.59725 * 4 2 1 6 6 C 1.50705 * 109.47421 * 174.61283 * 5 4 2 7 7 H 1.08000 * 119.99501 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99797 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00422 * 359.71928 * 8 6 5 10 10 Si 1.86806 * 119.99498 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47214 * 89.99999 * 10 8 6 12 12 H 1.48503 * 109.47025 * 209.99716 * 10 8 6 13 13 H 1.48495 * 109.47321 * 329.99613 * 10 8 6 14 14 N 1.46900 * 109.47360 * 120.00271 * 2 1 3 15 15 C 1.48523 * 111.00126 * 296.79579 * 14 2 1 16 16 C 1.54322 * 104.67364 * 200.80940 * 15 14 2 17 17 H 1.08998 * 111.81959 * 262.42624 * 16 15 14 18 18 C 1.54163 * 108.86483 * 138.40338 * 16 15 14 19 19 C 1.54848 * 104.32152 * 223.67624 * 18 16 15 20 20 C 1.54840 * 102.73961 * 38.18608 * 19 18 16 21 21 C 1.54902 * 104.92920 * 23.92159 * 16 15 14 22 22 H 1.09002 * 111.89228 * 237.66056 * 21 16 15 23 23 C 1.48532 * 110.99792 * 181.38411 * 14 2 1 24 24 H 1.09003 * 109.46825 * 299.99508 * 1 2 3 25 25 H 1.08994 * 109.47718 * 59.99815 * 1 2 3 26 26 H 1.08997 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47800 * 305.59518 * 4 2 1 28 28 H 1.09003 * 109.47351 * 185.58891 * 4 2 1 29 29 H 1.09003 * 109.47474 * 54.60761 * 5 4 2 30 30 H 1.09001 * 109.47184 * 294.60939 * 5 4 2 31 31 H 0.96997 * 119.99713 * 180.02562 * 9 8 6 32 32 H 1.09001 * 110.39589 * 319.60236 * 15 14 2 33 33 H 1.08994 * 110.40128 * 82.00926 * 15 14 2 34 34 H 1.09002 * 110.46414 * 342.38592 * 18 16 15 35 35 H 1.08995 * 110.46436 * 104.96801 * 18 16 15 36 36 H 1.09004 * 110.75817 * 156.49841 * 19 18 16 37 37 H 1.09004 * 110.75842 * 279.87089 * 19 18 16 38 38 H 1.08994 * 110.46343 * 80.52326 * 20 19 18 39 39 H 1.09000 * 110.46361 * 202.98372 * 20 19 18 40 40 H 1.08996 * 110.40227 * 277.99445 * 23 14 2 41 41 H 1.09004 * 110.39810 * 40.39708 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6480 0.0767 -2.4945 6 6 2.2620 -0.5613 -3.7140 7 1 2.8712 -1.4472 -3.6110 8 6 2.0460 -0.0142 -4.9609 9 7 1.2996 1.0613 -5.0869 10 14 2.8065 -0.8056 -6.4725 11 1 1.8695 -1.8155 -7.0270 12 1 3.0729 0.2369 -7.4960 13 1 4.0816 -1.4672 -6.0964 14 7 2.0197 -0.6925 1.1994 15 6 1.6079 0.0241 2.4333 16 6 2.5927 -0.4645 3.5164 17 1 2.1668 -1.2667 4.1190 18 6 3.0181 0.7380 4.3823 19 6 4.5473 0.5649 4.5532 20 6 4.9892 0.0424 3.1643 21 6 3.8456 -0.9320 2.7347 22 1 4.0864 -1.9752 2.9393 23 6 3.5041 -0.6834 1.2505 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.5971 -1.7158 -1.3009 28 1 3.1253 -0.8087 -1.2008 29 1 2.0099 1.1005 -2.3989 30 1 0.5627 0.0830 -2.5953 31 1 1.1474 1.4459 -5.9642 32 1 1.6991 1.1015 2.2953 33 1 0.5853 -0.2400 2.7027 34 1 2.7955 1.6741 3.8702 35 1 2.5202 0.7049 5.3513 36 1 5.0219 1.5207 4.7753 37 1 4.7688 -0.1673 5.3298 38 1 5.0806 0.8676 2.4581 39 1 5.9330 -0.4973 3.2427 40 1 3.9107 -1.4807 0.6284 41 1 3.8894 0.2843 0.9290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:54 Heat of formation + Delta-G solvation = -25.108864 kcal Electronic energy + Delta-G solvation = -17350.059678 eV Core-core repulsion = 14842.320102 eV Total energy + Delta-G solvation = -2507.739576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90979 -36.51690 -33.62402 -32.03305 -30.52842 -29.20901 -27.49180 -25.86809 -24.61177 -22.45128 -21.17367 -20.63109 -19.15844 -18.82496 -16.60125 -16.25340 -15.16739 -14.84346 -14.50198 -14.28797 -14.01529 -13.51092 -12.79890 -12.67765 -12.28071 -12.10757 -11.90698 -11.67267 -11.29023 -11.18800 -11.02120 -10.95140 -10.79234 -10.74548 -10.62217 -10.50591 -10.49490 -10.36617 -10.12008 -9.57423 -9.24065 -8.97583 -8.30199 -8.08700 -5.96386 -3.98050 3.34278 3.40248 3.43953 4.20632 4.39425 4.49341 4.56176 4.73284 5.19946 5.20633 5.27258 5.39370 5.41712 5.45061 5.47991 5.57224 5.62193 5.70759 5.76528 5.84585 5.91753 5.95287 6.00763 6.03572 6.11783 6.23149 6.28997 6.33434 6.40319 6.48720 6.66987 6.79790 6.81596 7.12442 7.28791 7.52115 7.73185 7.89128 8.04537 8.48476 9.09185 9.65665 11.15044 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040000 B = 0.004827 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.837992 B = 5798.758095 C = 6182.154774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.036 0.964 4 C -0.101 4.101 5 C 0.023 3.977 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.508 5.508 15 C 0.037 3.963 16 C -0.094 4.094 17 H 0.081 0.919 18 C -0.120 4.120 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.092 4.092 22 H 0.084 0.916 23 C 0.040 3.960 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.012 0.988 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -1.045 18.621 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 H 0.054 0.946 4 C -0.139 4.139 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.232 5.232 15 C -0.091 4.091 16 C -0.113 4.113 17 H 0.099 0.901 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.111 4.111 22 H 0.103 0.897 23 C -0.088 4.088 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.363 -1.458 18.438 18.798 hybrid contribution 0.653 0.515 -0.981 1.286 sum 4.016 -0.944 17.457 17.937 Atomic orbital electron populations 1.21821 0.94684 1.02035 1.01140 1.21977 0.95693 0.95535 0.90506 0.94624 1.21688 0.99416 0.99390 0.93382 1.19125 0.96894 0.94864 0.90603 1.21271 1.30843 1.11700 0.91782 0.92767 1.25016 0.95371 0.95023 0.99038 1.69967 1.38737 1.21393 1.23548 0.86617 0.79668 0.79017 0.82846 1.20667 1.21277 1.19907 1.65459 1.07479 1.48626 1.01651 1.23233 0.99078 0.96237 0.90571 1.22511 0.95574 0.97290 0.95943 0.90068 1.22498 0.95787 0.97978 0.99496 1.22487 0.95742 1.00645 0.97286 1.22863 0.97795 0.98552 0.96694 1.22892 0.94262 0.99214 0.94768 0.89727 1.23175 0.89290 1.00865 0.95453 0.94072 0.91281 0.92315 0.92782 0.93412 0.97007 0.96260 0.93085 0.94047 0.90727 0.91526 0.91878 0.91819 0.91650 0.91378 0.91854 0.90192 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.89 37.16 0.33 -2.06 16 2 C 0.07 1.30 1.90 -67.71 -0.13 1.17 16 3 H 0.04 0.69 7.98 -51.93 -0.41 0.27 16 4 C -0.10 -2.18 4.62 -26.73 -0.12 -2.30 16 5 C 0.02 0.60 4.61 -27.88 -0.13 0.47 16 6 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.51 -8.10 5.20 -222.16 -1.15 -9.25 16 15 C 0.04 0.49 5.01 -2.23 -0.01 0.48 16 16 C -0.09 -1.06 3.87 -88.32 -0.34 -1.40 16 17 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.12 -1.16 6.36 -25.15 -0.16 -1.32 16 19 C -0.12 -1.12 6.90 -24.79 -0.17 -1.29 16 20 C -0.12 -1.25 6.42 -24.01 -0.15 -1.40 16 21 C -0.09 -1.09 4.04 -87.18 -0.35 -1.44 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 23 C 0.04 0.59 4.96 -2.23 -0.01 0.58 16 24 H 0.04 0.61 7.02 -51.93 -0.36 0.25 16 25 H 0.07 1.29 6.71 -51.93 -0.35 0.94 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.05 1.03 6.70 -51.93 -0.35 0.68 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.53 6.85 -51.93 -0.36 0.17 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.04 0.57 6.98 -51.93 -0.36 0.20 16 33 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 34 H 0.07 0.68 7.18 -51.93 -0.37 0.31 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.75 7.25 -51.93 -0.38 0.38 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.23 7.53 -51.93 -0.39 0.84 16 41 H 0.04 0.69 7.03 -51.93 -0.37 0.33 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -29.93 309.73 -9.88 -39.80 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -7.44 Total: -3.36 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.66 Total: -22.26 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.42 Total: -35.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.93 -9.88 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.696 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds