Wall clock time and date at job start Thu Apr 9 2020 12:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 C 1.52998 * 109.46778 * 240.00265 * 2 1 3 5 5 C 1.52998 * 109.47208 * 65.59725 * 4 2 1 6 6 C 1.50705 * 109.47421 * 174.61283 * 5 4 2 7 7 H 1.08000 * 119.99501 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99797 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00422 * 359.71928 * 8 6 5 10 10 Si 1.86806 * 119.99498 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47214 * 89.99999 * 10 8 6 12 12 H 1.48503 * 109.47025 * 209.99716 * 10 8 6 13 13 H 1.48495 * 109.47321 * 329.99613 * 10 8 6 14 14 N 1.46900 * 109.47360 * 120.00271 * 2 1 3 15 15 C 1.48523 * 111.00126 * 296.79579 * 14 2 1 16 16 C 1.54322 * 104.67364 * 200.80940 * 15 14 2 17 17 H 1.08998 * 111.81959 * 262.42624 * 16 15 14 18 18 C 1.54163 * 108.86483 * 138.40338 * 16 15 14 19 19 C 1.54848 * 104.32152 * 223.67624 * 18 16 15 20 20 C 1.54840 * 102.73961 * 38.18608 * 19 18 16 21 21 C 1.54902 * 104.92920 * 23.92159 * 16 15 14 22 22 H 1.09002 * 111.89228 * 237.66056 * 21 16 15 23 23 C 1.48532 * 110.99792 * 181.38411 * 14 2 1 24 24 H 1.09003 * 109.46825 * 299.99508 * 1 2 3 25 25 H 1.08994 * 109.47718 * 59.99815 * 1 2 3 26 26 H 1.08997 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47800 * 305.59518 * 4 2 1 28 28 H 1.09003 * 109.47351 * 185.58891 * 4 2 1 29 29 H 1.09003 * 109.47474 * 54.60761 * 5 4 2 30 30 H 1.09001 * 109.47184 * 294.60939 * 5 4 2 31 31 H 0.96997 * 119.99713 * 180.02562 * 9 8 6 32 32 H 1.09001 * 110.39589 * 319.60236 * 15 14 2 33 33 H 1.08994 * 110.40128 * 82.00926 * 15 14 2 34 34 H 1.09002 * 110.46414 * 342.38592 * 18 16 15 35 35 H 1.08995 * 110.46436 * 104.96801 * 18 16 15 36 36 H 1.09004 * 110.75817 * 156.49841 * 19 18 16 37 37 H 1.09004 * 110.75842 * 279.87089 * 19 18 16 38 38 H 1.08994 * 110.46343 * 80.52326 * 20 19 18 39 39 H 1.09000 * 110.46361 * 202.98372 * 20 19 18 40 40 H 1.08996 * 110.40227 * 277.99445 * 23 14 2 41 41 H 1.09004 * 110.39810 * 40.39708 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6480 0.0767 -2.4945 6 6 2.2620 -0.5613 -3.7140 7 1 2.8712 -1.4472 -3.6110 8 6 2.0460 -0.0142 -4.9609 9 7 1.2996 1.0613 -5.0869 10 14 2.8065 -0.8056 -6.4725 11 1 1.8695 -1.8155 -7.0270 12 1 3.0729 0.2369 -7.4960 13 1 4.0816 -1.4672 -6.0964 14 7 2.0197 -0.6925 1.1994 15 6 1.6079 0.0241 2.4333 16 6 2.5927 -0.4645 3.5164 17 1 2.1668 -1.2667 4.1190 18 6 3.0181 0.7380 4.3823 19 6 4.5473 0.5649 4.5532 20 6 4.9892 0.0424 3.1643 21 6 3.8456 -0.9320 2.7347 22 1 4.0864 -1.9752 2.9393 23 6 3.5041 -0.6834 1.2505 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.5971 -1.7158 -1.3009 28 1 3.1253 -0.8087 -1.2008 29 1 2.0099 1.1005 -2.3989 30 1 0.5627 0.0830 -2.5953 31 1 1.1474 1.4459 -5.9642 32 1 1.6991 1.1015 2.2953 33 1 0.5853 -0.2400 2.7027 34 1 2.7955 1.6741 3.8702 35 1 2.5202 0.7049 5.3513 36 1 5.0219 1.5207 4.7753 37 1 4.7688 -0.1673 5.3298 38 1 5.0806 0.8676 2.4581 39 1 5.9330 -0.4973 3.2427 40 1 3.9107 -1.4807 0.6284 41 1 3.8894 0.2843 0.9290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:54 Heat of formation + Delta-G solvation = -42.282141 kcal Electronic energy + Delta-G solvation = -17350.804368 eV Core-core repulsion = 14842.320102 eV Total energy + Delta-G solvation = -2508.484265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98054 -37.83898 -35.46218 -33.73102 -31.57941 -30.82644 -28.64031 -27.39753 -26.07626 -24.02790 -22.48847 -21.75549 -20.54050 -19.88850 -18.53584 -17.51398 -16.59446 -16.28522 -16.01862 -15.54920 -15.28542 -14.68608 -14.31040 -14.21569 -13.94658 -13.34193 -13.24198 -13.06012 -12.90915 -12.85985 -12.52585 -12.33842 -11.98738 -11.92441 -11.84385 -11.61723 -11.54417 -11.50709 -11.43292 -11.35276 -11.20937 -10.97874 -10.54740 -9.38668 -8.20974 -6.32024 1.38596 1.40224 1.51352 2.39964 3.02394 3.11930 3.50052 3.59189 3.79874 4.07015 4.10090 4.23767 4.38277 4.45787 4.49046 4.49879 4.52825 4.60319 4.72734 4.78125 4.83068 4.92964 4.96050 4.97162 4.98863 5.05706 5.07978 5.15898 5.18203 5.22698 5.30397 5.35632 5.48791 5.50376 5.51802 5.74180 5.84037 5.98676 6.11072 6.27843 6.84365 7.37025 8.90914 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040000 B = 0.004827 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.837992 B = 5798.758095 C = 6182.154774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.079 3.921 3 H 0.022 0.978 4 C -0.086 4.086 5 C 0.030 3.970 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.264 1.264 14 N -0.514 5.514 15 C 0.035 3.965 16 C -0.089 4.089 17 H 0.093 0.907 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.089 4.089 22 H 0.093 0.907 23 C 0.036 3.964 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.044 0.956 29 H -0.015 1.015 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -1.923 20.028 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 H 0.040 0.960 4 C -0.124 4.124 5 C -0.007 4.007 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.189 1.189 14 N -0.238 5.238 15 C -0.093 4.093 16 C -0.108 4.108 17 H 0.112 0.888 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.108 4.108 22 H 0.111 0.889 23 C -0.092 4.092 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.003 0.997 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.080 -2.341 19.865 20.414 hybrid contribution 0.417 0.807 -1.413 1.680 sum 4.497 -1.534 18.452 19.054 Atomic orbital electron populations 1.21738 0.93765 1.02194 1.01324 1.21733 0.96373 0.94391 0.90415 0.96027 1.21443 0.99195 0.98634 0.93130 1.18983 0.95325 0.93967 0.92459 1.21688 1.31322 1.12106 0.93099 0.92552 1.25964 0.95675 0.95465 1.02553 1.70096 1.39829 1.22750 1.24631 0.85458 0.79070 0.78205 0.78393 1.19652 1.20554 1.18866 1.65424 1.08301 1.48546 1.01544 1.23342 1.00232 0.95837 0.89886 1.22536 0.94526 0.98310 0.95466 0.88850 1.22483 0.96477 0.96684 0.99850 1.22482 0.95083 1.01456 0.96566 1.22850 0.97786 0.97898 0.97327 1.22899 0.95287 1.00180 0.92422 0.88876 1.23222 0.88520 0.99749 0.97708 0.91477 0.93467 0.92103 0.93118 0.93691 0.99686 0.98223 0.92742 0.94470 0.89909 0.92378 0.90111 0.90941 0.90245 0.92703 0.90748 0.91380 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.89 71.98 0.64 -3.95 16 2 C 0.08 2.96 1.90 44.91 0.09 3.05 16 3 H 0.02 0.87 7.98 -2.39 -0.02 0.85 16 4 C -0.09 -3.83 4.62 30.59 0.14 -3.69 16 5 C 0.03 1.66 4.61 29.85 0.14 1.79 16 6 C -0.54 -32.13 9.11 25.60 0.23 -31.90 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 N -0.51 -16.17 5.20 -856.77 -4.45 -20.62 16 15 C 0.03 0.87 5.01 86.44 0.43 1.31 16 16 C -0.09 -1.81 3.87 -9.30 -0.04 -1.84 16 17 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 18 C -0.12 -1.95 6.36 31.62 0.20 -1.75 16 19 C -0.12 -1.79 6.90 31.85 0.22 -1.57 16 20 C -0.12 -2.27 6.42 32.36 0.21 -2.06 16 21 C -0.09 -1.95 4.04 -8.56 -0.03 -1.98 16 22 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 23 C 0.04 1.05 4.96 86.44 0.43 1.48 16 24 H 0.07 1.94 7.02 -2.39 -0.02 1.92 16 25 H 0.05 1.82 6.71 -2.39 -0.02 1.80 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.04 1.99 6.70 -2.39 -0.02 1.97 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.00 -0.03 6.85 -2.39 -0.02 -0.05 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.04 0.98 6.98 -2.39 -0.02 0.96 16 33 H 0.08 1.96 7.68 -2.39 -0.02 1.94 16 34 H 0.06 1.08 7.18 -2.39 -0.02 1.06 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.05 1.17 7.25 -2.39 -0.02 1.16 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 2.12 7.53 -2.39 -0.02 2.10 16 41 H 0.03 1.01 7.03 -2.39 -0.02 0.99 16 Total: -1.00 -64.65 309.73 1.94 -62.71 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.96 Total: 8.84 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.12 Total: -40.58 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -4.17 Total: -78.22 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.65 1.94 -62.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.423 kcal (2) G-P(sol) polarization free energy of solvation -64.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds