Wall clock time and date at job start Thu Apr 9 2020 12:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46884 * 240.00271 * 2 1 3 5 5 C 1.53004 * 109.47000 * 175.00294 * 4 2 1 6 6 C 1.50701 * 109.47211 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27574 * 6 5 4 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 5 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 5 11 11 H 1.48494 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47301 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47430 * 239.99516 * 10 8 6 14 14 N 1.46899 * 109.46969 * 120.00379 * 2 1 3 15 15 C 1.46909 * 110.99611 * 274.99865 * 14 2 1 16 16 H 1.09001 * 110.35799 * 35.87547 * 15 14 2 17 17 C 1.54577 * 110.40047 * 273.54930 * 15 14 2 18 18 C 1.55932 * 104.64252 * 241.20779 * 17 15 14 19 19 H 1.09000 * 115.92103 * 199.96553 * 18 17 15 20 20 C 1.55924 * 104.49610 * 71.08969 * 18 17 15 21 21 C 1.54588 * 104.64328 * 289.72058 * 20 18 17 22 22 C 1.55920 * 110.40217 * 158.32771 * 15 14 2 23 23 H 1.09006 * 115.92024 * 279.63460 * 22 15 14 24 24 C 1.56947 * 100.65417 * 152.57038 * 22 15 14 25 25 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46977 * 299.99633 * 1 2 3 27 27 H 1.09004 * 109.46925 * 60.00272 * 1 2 3 28 28 H 1.09000 * 109.47849 * 54.99814 * 4 2 1 29 29 H 1.09007 * 109.47288 * 294.99408 * 4 2 1 30 30 H 1.09000 * 109.47211 * 59.99130 * 5 4 2 31 31 H 1.09007 * 109.46376 * 299.99672 * 5 4 2 32 32 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 33 33 H 1.00897 * 111.00467 * 38.95150 * 14 2 1 34 34 H 1.09001 * 110.40745 * 359.97438 * 17 15 14 35 35 H 1.09002 * 110.40606 * 122.30299 * 17 15 14 36 36 H 1.09003 * 110.40759 * 48.51094 * 20 18 17 37 37 H 1.08998 * 110.40792 * 170.81604 * 20 18 17 38 38 H 1.09004 * 110.40007 * 118.79058 * 21 20 18 39 39 H 1.08999 * 110.39985 * 241.09030 * 21 20 18 40 40 H 1.09004 * 112.02916 * 189.69522 * 24 22 15 41 41 H 1.09001 * 112.02820 * 63.17185 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 6 4.0672 -1.3231 -2.5445 7 1 3.3686 -1.8035 -3.2137 8 6 5.4188 -1.3645 -2.8130 9 7 6.2694 -0.7798 -1.9981 10 14 6.0421 -2.2510 -4.3346 11 1 4.8920 -2.8215 -5.0809 12 1 6.7696 -1.2914 -5.2035 13 1 6.9601 -3.3454 -3.9287 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2542 0.9303 2.3133 17 6 3.4331 0.9742 2.3634 18 6 4.1009 0.5552 3.7088 19 1 4.8878 1.2142 4.0757 20 6 4.5044 -0.9358 3.4966 21 6 3.1630 -1.7038 3.4703 22 6 2.0614 -0.5797 3.6837 23 1 1.0814 -0.9166 4.0218 24 6 2.8363 0.4071 4.6266 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2056 30 1 3.9995 -1.0727 -0.4259 31 1 3.8532 0.4371 -1.3573 32 1 7.2204 -0.8092 -2.1868 33 1 1.4496 -1.4980 1.4100 34 1 4.0508 0.6644 1.5204 35 1 3.2689 2.0515 2.3380 36 1 5.0298 -1.0563 2.5492 37 1 5.1265 -1.2824 4.3218 38 1 3.0290 -2.2016 2.5099 39 1 3.1249 -2.4298 4.2824 40 1 3.0788 -0.0498 5.5860 41 1 2.3086 1.3527 4.7511 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:56 Heat of formation + Delta-G solvation = -17.400652 kcal Electronic energy + Delta-G solvation = -17778.744116 eV Core-core repulsion = 15271.338793 eV Total energy + Delta-G solvation = -2507.405323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96295 -36.41742 -33.06092 -31.12222 -29.53741 -28.98781 -28.17120 -25.90484 -24.90579 -21.65751 -21.08086 -20.22445 -19.29031 -18.22222 -16.15227 -15.96523 -15.59267 -15.05872 -14.38581 -13.89878 -13.32430 -13.20065 -12.57684 -12.35848 -12.12683 -12.03124 -11.77821 -11.34758 -11.13305 -11.10977 -10.98290 -10.83636 -10.70403 -10.66694 -10.47411 -10.38633 -10.12880 -9.99175 -9.59432 -9.55617 -9.15364 -8.83488 -8.19886 -7.74480 -5.85515 -3.86090 3.37899 3.45275 3.49393 4.50545 4.56771 4.71893 4.74124 4.91139 5.38297 5.45016 5.47574 5.50112 5.54907 5.56057 5.62259 5.71964 5.76350 5.84078 5.86786 5.94369 6.12856 6.14755 6.24471 6.30219 6.34972 6.38160 6.46431 6.58254 6.62200 6.75097 6.79793 6.84212 6.97085 7.37970 7.67860 7.88820 7.94330 8.12745 8.27787 8.61950 9.23122 9.76323 11.25391 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.006699 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.965331 B = 4178.896153 C = 4868.164121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.660 5.660 15 C 0.088 3.912 16 H 0.036 0.964 17 C -0.114 4.114 18 C -0.102 4.102 19 H 0.089 0.911 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.111 4.111 23 H 0.089 0.911 24 C -0.122 4.122 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.005 0.995 32 H 0.256 0.744 33 H 0.333 0.667 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 1.994 12.503 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.291 5.291 15 C -0.022 4.022 16 H 0.054 0.946 17 C -0.153 4.153 18 C -0.120 4.120 19 H 0.107 0.893 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.130 4.130 23 H 0.107 0.893 24 C -0.160 4.160 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.843 2.097 12.331 14.763 hybrid contribution -0.558 -0.319 -0.689 0.942 sum -8.400 1.778 11.642 14.466 Atomic orbital electron populations 1.22537 0.98881 1.01369 1.01057 1.21755 0.90671 0.98378 0.91885 0.91200 1.21617 1.00619 0.98270 0.93076 1.18986 0.88290 0.96362 0.96939 1.21400 0.91792 1.33846 1.08482 0.93168 1.24983 0.97158 0.95829 0.96433 1.69983 1.02012 1.44484 1.36892 0.86654 0.78807 0.79579 0.83626 1.19931 1.21221 1.21172 1.60743 1.56955 1.08693 1.02679 1.22507 0.96468 0.93570 0.89616 0.94617 1.22744 0.96475 0.97875 0.98164 1.23499 0.96245 0.96884 0.95362 0.89257 1.22520 0.96961 0.94122 1.01674 1.22995 0.93799 0.96322 1.01935 1.24221 0.97588 0.96431 0.94764 0.89277 1.23482 0.96701 0.98448 0.97380 0.92894 0.93875 0.92470 0.93777 0.93611 0.94822 0.97620 0.93380 0.84857 0.89139 0.93084 0.90556 0.93123 0.89533 0.93338 0.91725 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.15 37.16 0.34 -2.16 16 2 C 0.08 1.41 2.44 -67.71 -0.17 1.24 16 3 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 4 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 16 5 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 6 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 10 Si 0.88 22.19 29.54 -169.99 -5.02 17.17 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.66 -10.55 4.09 -97.24 -0.40 -10.95 16 15 C 0.09 1.26 2.69 -65.32 -0.18 1.08 16 16 H 0.04 0.50 7.19 -51.93 -0.37 0.13 16 17 C -0.11 -1.77 5.81 -24.34 -0.14 -1.91 16 18 C -0.10 -1.37 5.14 -85.35 -0.44 -1.81 16 19 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.12 -1.67 6.22 -24.33 -0.15 -1.83 16 21 C -0.11 -1.53 6.15 -22.66 -0.14 -1.67 16 22 C -0.11 -1.37 4.93 -83.68 -0.41 -1.78 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 C -0.12 -1.42 6.45 -22.45 -0.14 -1.57 16 25 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.33 4.91 7.58 -39.29 -0.30 4.61 16 34 H 0.09 1.75 7.63 -51.93 -0.40 1.35 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.34 7.82 -51.93 -0.41 0.93 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -29.77 314.76 -9.65 -39.42 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.61 Total: 1.89 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.10 Total: -25.66 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.34 Total: -37.57 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.77 -9.65 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.024 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds