Wall clock time and date at job start Thu Apr 9 2020 12:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46884 * 240.00271 * 2 1 3 5 5 C 1.53004 * 109.47000 * 175.00294 * 4 2 1 6 6 C 1.50701 * 109.47211 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27574 * 6 5 4 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 5 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 5 11 11 H 1.48494 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47301 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47430 * 239.99516 * 10 8 6 14 14 N 1.46899 * 109.46969 * 120.00379 * 2 1 3 15 15 C 1.46909 * 110.99611 * 274.99865 * 14 2 1 16 16 H 1.09001 * 110.35799 * 35.87547 * 15 14 2 17 17 C 1.54577 * 110.40047 * 273.54930 * 15 14 2 18 18 C 1.55932 * 104.64252 * 241.20779 * 17 15 14 19 19 H 1.09000 * 115.92103 * 199.96553 * 18 17 15 20 20 C 1.55924 * 104.49610 * 71.08969 * 18 17 15 21 21 C 1.54588 * 104.64328 * 289.72058 * 20 18 17 22 22 C 1.55920 * 110.40217 * 158.32771 * 15 14 2 23 23 H 1.09006 * 115.92024 * 279.63460 * 22 15 14 24 24 C 1.56947 * 100.65417 * 152.57038 * 22 15 14 25 25 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46977 * 299.99633 * 1 2 3 27 27 H 1.09004 * 109.46925 * 60.00272 * 1 2 3 28 28 H 1.09000 * 109.47849 * 54.99814 * 4 2 1 29 29 H 1.09007 * 109.47288 * 294.99408 * 4 2 1 30 30 H 1.09000 * 109.47211 * 59.99130 * 5 4 2 31 31 H 1.09007 * 109.46376 * 299.99672 * 5 4 2 32 32 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 33 33 H 1.00897 * 111.00467 * 38.95150 * 14 2 1 34 34 H 1.09001 * 110.40745 * 359.97438 * 17 15 14 35 35 H 1.09002 * 110.40606 * 122.30299 * 17 15 14 36 36 H 1.09003 * 110.40759 * 48.51094 * 20 18 17 37 37 H 1.08998 * 110.40792 * 170.81604 * 20 18 17 38 38 H 1.09004 * 110.40007 * 118.79058 * 21 20 18 39 39 H 1.08999 * 110.39985 * 241.09030 * 21 20 18 40 40 H 1.09004 * 112.02916 * 189.69522 * 24 22 15 41 41 H 1.09001 * 112.02820 * 63.17185 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 6 4.0672 -1.3231 -2.5445 7 1 3.3686 -1.8035 -3.2137 8 6 5.4188 -1.3645 -2.8130 9 7 6.2694 -0.7798 -1.9981 10 14 6.0421 -2.2510 -4.3346 11 1 4.8920 -2.8215 -5.0809 12 1 6.7696 -1.2914 -5.2035 13 1 6.9601 -3.3454 -3.9287 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2542 0.9303 2.3133 17 6 3.4331 0.9742 2.3634 18 6 4.1009 0.5552 3.7088 19 1 4.8878 1.2142 4.0757 20 6 4.5044 -0.9358 3.4966 21 6 3.1630 -1.7038 3.4703 22 6 2.0614 -0.5797 3.6837 23 1 1.0814 -0.9166 4.0218 24 6 2.8363 0.4071 4.6266 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2056 30 1 3.9995 -1.0727 -0.4259 31 1 3.8532 0.4371 -1.3573 32 1 7.2204 -0.8092 -2.1868 33 1 1.4496 -1.4980 1.4100 34 1 4.0508 0.6644 1.5204 35 1 3.2689 2.0515 2.3380 36 1 5.0298 -1.0563 2.5492 37 1 5.1265 -1.2824 4.3218 38 1 3.0290 -2.2016 2.5099 39 1 3.1249 -2.4298 4.2824 40 1 3.0788 -0.0498 5.5860 41 1 2.3086 1.3527 4.7511 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:56 Heat of formation + Delta-G solvation = -33.830270 kcal Electronic energy + Delta-G solvation = -17779.456558 eV Core-core repulsion = 15271.338793 eV Total energy + Delta-G solvation = -2508.117765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09501 -37.84699 -35.17187 -32.79008 -30.88776 -30.42580 -29.26153 -27.13944 -26.79949 -23.31502 -22.49729 -21.60893 -20.54242 -19.39197 -18.36557 -17.12005 -16.85915 -16.49596 -16.28549 -15.26742 -14.75208 -14.63450 -14.14695 -14.00966 -13.45900 -13.26811 -13.10479 -13.06953 -12.87663 -12.68399 -12.33123 -12.24034 -12.09427 -11.93871 -11.74808 -11.64099 -11.54372 -11.47820 -11.23941 -11.17391 -10.93576 -10.67277 -10.48814 -9.00675 -8.13386 -6.23950 1.38465 1.39094 1.52196 2.43089 3.18472 3.30733 3.62289 3.68321 3.80463 4.08268 4.29883 4.34776 4.39158 4.44466 4.48447 4.53111 4.62213 4.68214 4.77692 4.79082 4.93386 5.00377 5.05185 5.06772 5.08860 5.20781 5.25551 5.30144 5.32454 5.37442 5.45216 5.46854 5.53544 5.60156 5.69014 5.91145 6.05196 6.35213 6.42391 6.75577 6.96340 7.44031 8.97681 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.006699 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.965331 B = 4178.896153 C = 4868.164121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.052 0.948 4 C -0.088 4.088 5 C 0.044 3.956 6 C -0.542 4.542 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.677 5.677 15 C 0.090 3.910 16 H 0.048 0.952 17 C -0.118 4.118 18 C -0.103 4.103 19 H 0.097 0.903 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.097 4.097 23 H 0.118 0.882 24 C -0.108 4.108 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.004 0.996 31 H -0.029 1.029 32 H 0.260 0.740 33 H 0.342 0.658 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.539 1.501 13.562 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.007 3.993 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.199 4.199 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.309 5.309 15 C -0.020 4.020 16 H 0.066 0.934 17 C -0.156 4.156 18 C -0.121 4.121 19 H 0.115 0.885 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.116 4.116 23 H 0.136 0.864 24 C -0.146 4.146 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.023 0.977 31 H -0.011 1.011 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.706 1.601 13.392 16.616 hybrid contribution 0.102 -0.146 -1.032 1.048 sum -9.603 1.455 12.360 15.719 Atomic orbital electron populations 1.22376 0.95493 1.02431 1.02246 1.21497 0.93153 0.96633 0.90631 0.93005 1.21451 0.96591 0.98993 0.95552 1.18766 0.92122 0.93429 0.94947 1.21847 0.92463 1.34284 1.09430 0.92795 1.25948 0.97415 0.96557 0.99940 1.70138 1.02423 1.45650 1.38947 0.85474 0.78394 0.78319 0.79291 1.18682 1.20437 1.20461 1.60586 1.57677 1.09534 1.03134 1.22530 0.95638 0.93707 0.90120 0.93427 1.22712 0.97005 0.98374 0.97518 1.23551 0.97670 0.95942 0.94935 0.88463 1.22488 0.97698 0.95668 0.99702 1.22954 0.93670 0.97037 1.01406 1.24268 0.98423 0.95410 0.93474 0.86443 1.23435 0.94763 0.99077 0.97284 0.91857 0.91898 0.92061 0.93647 0.93454 0.97711 1.01082 0.93148 0.83857 0.94467 0.92581 0.95290 0.91581 0.92011 0.91271 0.89787 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 9.15 71.98 0.66 -3.62 16 2 C 0.09 3.11 2.44 44.92 0.11 3.22 16 3 H 0.05 1.95 7.74 -2.39 -0.02 1.93 16 4 C -0.09 -3.77 4.83 30.59 0.15 -3.63 16 5 C 0.04 2.48 4.86 29.85 0.15 2.62 16 6 C -0.54 -32.50 9.11 25.60 0.23 -32.26 16 7 H 0.05 3.12 7.74 -2.91 -0.02 3.09 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -59.25 13.29 21.45 0.28 -58.97 16 10 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 11 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 N -0.68 -21.93 4.09 -461.57 -1.89 -23.82 16 15 C 0.09 2.48 2.69 46.46 0.12 2.61 16 16 H 0.05 1.23 7.19 -2.39 -0.02 1.21 16 17 C -0.12 -3.79 5.81 32.15 0.19 -3.60 16 18 C -0.10 -2.74 5.14 -7.38 -0.04 -2.77 16 19 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 20 C -0.12 -3.52 6.22 32.15 0.20 -3.32 16 21 C -0.11 -2.98 6.15 33.23 0.20 -2.77 16 22 C -0.10 -2.13 4.93 -6.30 -0.03 -2.16 16 23 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 24 C -0.11 -2.17 6.45 33.36 0.22 -1.95 16 25 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 26 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 27 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 31 H -0.03 -1.80 8.14 -2.38 -0.02 -1.82 16 32 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 33 H 0.34 9.83 7.58 -89.70 -0.68 9.15 16 34 H 0.04 1.58 7.63 -2.39 -0.02 1.56 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 1.11 7.82 -2.39 -0.02 1.09 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.94 6.39 -2.39 -0.02 1.93 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -67.71 314.76 3.33 -64.37 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.29 Total: 17.42 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 2.62 Total: -47.25 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.60 Total: -82.79 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -67.71 3.33 -64.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.544 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds