Wall clock time and date at job start Thu Apr 9 2020 12:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.53002 * 109.47188 * 184.99772 * 4 2 1 6 6 C 1.50703 * 109.46901 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99414 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00656 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99509 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47123 * 60.00408 * 10 8 6 12 12 H 1.48503 * 109.46971 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47486 * 299.99885 * 10 8 6 14 14 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 15 15 C 1.46905 * 110.99870 * 84.99904 * 14 2 1 16 16 H 1.09000 * 110.35653 * 35.87261 * 15 14 2 17 17 C 1.54581 * 110.40301 * 273.55020 * 15 14 2 18 18 C 1.55929 * 104.64153 * 241.21143 * 17 15 14 19 19 H 1.09005 * 115.92190 * 199.97081 * 18 17 15 20 20 C 1.55924 * 104.50105 * 71.08317 * 18 17 15 21 21 C 1.56532 * 103.72390 * 289.18537 * 20 18 17 22 22 C 1.55925 * 104.82346 * 0.40163 * 21 20 18 23 23 H 1.09005 * 116.52589 * 199.33104 * 22 21 20 24 24 C 1.56946 * 100.65161 * 325.95311 * 22 21 20 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 27 27 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 29 29 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 30 30 H 1.08994 * 109.47395 * 300.00158 * 5 4 2 31 31 H 1.08999 * 109.47053 * 60.00482 * 5 4 2 32 32 H 0.96996 * 120.00523 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00067 * 208.95080 * 14 2 1 34 34 H 1.09002 * 110.39829 * 359.97438 * 17 15 14 35 35 H 1.08999 * 110.40315 * 122.30234 * 17 15 14 36 36 H 1.09001 * 110.40310 * 48.51254 * 20 18 17 37 37 H 1.08996 * 110.40621 * 170.93071 * 20 18 17 38 38 H 1.09003 * 110.53999 * 241.43742 * 21 20 18 39 39 H 1.09001 * 110.18257 * 119.18785 * 21 20 18 40 40 H 1.09006 * 112.02463 * 296.82319 * 24 22 21 41 41 H 1.09000 * 112.09128 * 170.33253 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5438 7 1 3.3687 -1.8054 3.2125 8 6 5.4184 -1.3605 2.8154 9 7 6.2689 -0.7752 2.0009 10 14 6.0412 -2.2424 4.3399 11 1 5.6490 -3.6735 4.2788 12 1 7.5212 -2.1376 4.4025 13 1 5.4487 -1.6180 5.5499 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 1 2.3789 1.2197 -2.0210 17 6 0.7167 0.2759 -3.0691 18 6 1.0130 -0.2386 -4.5110 19 1 0.2808 0.0299 -5.2726 20 6 1.2839 -1.7638 -4.3333 21 6 2.6703 -1.8127 -3.6083 22 6 3.0753 -0.3188 -3.4204 23 1 4.1311 -0.1200 -3.2363 24 6 2.4673 0.3125 -4.7224 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7516 -1.7715 1.2055 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4369 1.3574 32 1 7.2195 -0.8004 2.1922 33 1 2.9173 -1.1204 -1.0288 34 1 -0.0011 -0.3774 -2.5730 35 1 0.3419 1.2990 -3.0983 36 1 0.5028 -2.2202 -3.7253 37 1 1.3459 -2.2544 -5.3046 38 1 3.4056 -2.3313 -4.2236 39 1 2.5714 -2.3043 -2.6404 40 1 2.9291 -0.0880 -5.6249 41 1 2.4986 1.4019 -4.7030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:58 Heat of formation + Delta-G solvation = -18.585000 kcal Electronic energy + Delta-G solvation = -17624.175936 eV Core-core repulsion = 15116.719256 eV Total energy + Delta-G solvation = -2507.456680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10963 -36.45989 -33.10588 -31.13198 -29.77389 -29.16230 -28.10800 -26.29017 -24.79073 -21.61680 -21.32903 -20.04304 -19.33794 -18.36975 -16.38557 -16.12716 -15.48699 -15.12705 -14.51877 -14.25920 -13.24453 -13.15991 -12.55565 -12.43711 -12.30268 -11.92436 -11.71299 -11.53252 -11.23848 -11.13964 -11.04820 -10.90234 -10.82051 -10.62408 -10.53471 -10.46634 -10.30444 -10.10736 -9.71701 -9.62401 -9.24018 -8.99884 -8.34559 -7.89353 -5.99712 -4.01777 3.33867 3.38065 3.40832 4.46534 4.53043 4.62774 4.66822 4.87777 5.31893 5.36281 5.40799 5.44312 5.55395 5.61637 5.65985 5.68977 5.76430 5.87544 5.90304 5.91569 6.05343 6.15484 6.19146 6.23773 6.27621 6.32756 6.39693 6.47376 6.56495 6.58183 6.61601 6.68602 6.96309 7.12138 7.63736 7.64685 7.83756 7.96896 8.03213 8.43778 9.04832 9.62336 11.11476 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033064 B = 0.005603 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.642428 B = 4995.894040 C = 5447.116678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.035 0.965 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.676 5.676 15 C 0.086 3.914 16 H 0.041 0.959 17 C -0.111 4.111 18 C -0.107 4.107 19 H 0.088 0.912 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.108 4.108 23 H 0.095 0.905 24 C -0.123 4.123 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.260 0.740 33 H 0.352 0.648 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 1.565 -12.536 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 H 0.053 0.947 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.311 5.311 15 C -0.024 4.024 16 H 0.059 0.941 17 C -0.149 4.149 18 C -0.125 4.125 19 H 0.106 0.894 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.127 4.127 23 H 0.114 0.886 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.175 0.825 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.061 1.333 -12.695 16.253 hybrid contribution 1.276 0.161 1.119 1.705 sum -8.786 1.494 -11.576 14.609 Atomic orbital electron populations 1.21897 0.95985 1.01541 1.00248 1.21648 0.94452 0.95915 0.90735 0.94681 1.21827 0.99599 0.99388 0.94423 1.19113 0.88846 0.96760 0.96848 1.21211 0.91927 1.34236 1.08385 0.92765 1.25015 0.97073 0.95611 0.96677 1.69945 1.02396 1.44150 1.37084 0.86669 0.77569 0.80286 0.83545 1.20222 1.21324 1.20289 1.60780 1.34307 1.32019 1.03990 1.22559 0.94568 0.94191 0.91095 0.94087 1.22811 0.97530 1.00031 0.94529 1.23547 0.96358 0.95928 0.96700 0.89366 1.22840 0.97644 0.95207 0.99197 1.22830 0.95594 0.95569 1.01364 1.23712 0.98067 0.96279 0.94642 0.88633 1.23521 0.95760 0.99463 0.97340 0.93398 0.93306 0.92558 0.92932 0.92564 0.96658 0.97066 0.92997 0.82515 0.90264 0.92973 0.91525 0.92964 0.92879 0.89737 0.91601 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.82 37.15 0.33 -1.75 16 2 C 0.08 1.44 2.65 -67.72 -0.18 1.26 16 3 H 0.04 0.66 7.47 -51.93 -0.39 0.27 16 4 C -0.11 -2.38 4.74 -26.73 -0.13 -2.51 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 N -0.68 -11.24 4.78 -97.24 -0.46 -11.70 16 15 C 0.09 1.27 2.90 -65.32 -0.19 1.08 16 16 H 0.04 0.65 7.50 -51.93 -0.39 0.26 16 17 C -0.11 -1.41 4.65 -24.34 -0.11 -1.52 16 18 C -0.11 -1.20 5.14 -85.35 -0.44 -1.64 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.11 -1.31 6.36 -23.27 -0.15 -1.46 16 21 C -0.12 -1.54 6.10 -23.27 -0.14 -1.68 16 22 C -0.11 -1.47 4.81 -85.36 -0.41 -1.88 16 23 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 24 C -0.12 -1.41 6.43 -22.46 -0.14 -1.56 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.67 5.90 -51.93 -0.31 0.36 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.02 0.41 6.43 -51.93 -0.33 0.07 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.35 6.58 5.54 -39.29 -0.22 6.36 16 34 H 0.08 1.07 6.18 -51.93 -0.32 0.75 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.27 6.33 -51.93 -0.33 0.94 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -28.68 307.84 -9.53 -38.20 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.31 Total: 3.05 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.11 Total: -24.77 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.27 Total: -37.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.68 -9.53 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.617 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds