Wall clock time and date at job start Thu Apr 9 2020 12:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.53002 * 109.47188 * 184.99772 * 4 2 1 6 6 C 1.50703 * 109.46901 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99414 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00656 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99509 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47123 * 60.00408 * 10 8 6 12 12 H 1.48503 * 109.46971 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47486 * 299.99885 * 10 8 6 14 14 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 15 15 C 1.46905 * 110.99870 * 84.99904 * 14 2 1 16 16 H 1.09000 * 110.35653 * 35.87261 * 15 14 2 17 17 C 1.54581 * 110.40301 * 273.55020 * 15 14 2 18 18 C 1.55929 * 104.64153 * 241.21143 * 17 15 14 19 19 H 1.09005 * 115.92190 * 199.97081 * 18 17 15 20 20 C 1.55924 * 104.50105 * 71.08317 * 18 17 15 21 21 C 1.56532 * 103.72390 * 289.18537 * 20 18 17 22 22 C 1.55925 * 104.82346 * 0.40163 * 21 20 18 23 23 H 1.09005 * 116.52589 * 199.33104 * 22 21 20 24 24 C 1.56946 * 100.65161 * 325.95311 * 22 21 20 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 27 27 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 29 29 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 30 30 H 1.08994 * 109.47395 * 300.00158 * 5 4 2 31 31 H 1.08999 * 109.47053 * 60.00482 * 5 4 2 32 32 H 0.96996 * 120.00523 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00067 * 208.95080 * 14 2 1 34 34 H 1.09002 * 110.39829 * 359.97438 * 17 15 14 35 35 H 1.08999 * 110.40315 * 122.30234 * 17 15 14 36 36 H 1.09001 * 110.40310 * 48.51254 * 20 18 17 37 37 H 1.08996 * 110.40621 * 170.93071 * 20 18 17 38 38 H 1.09003 * 110.53999 * 241.43742 * 21 20 18 39 39 H 1.09001 * 110.18257 * 119.18785 * 21 20 18 40 40 H 1.09006 * 112.02463 * 296.82319 * 24 22 21 41 41 H 1.09000 * 112.09128 * 170.33253 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5438 7 1 3.3687 -1.8054 3.2125 8 6 5.4184 -1.3605 2.8154 9 7 6.2689 -0.7752 2.0009 10 14 6.0412 -2.2424 4.3399 11 1 5.6490 -3.6735 4.2788 12 1 7.5212 -2.1376 4.4025 13 1 5.4487 -1.6180 5.5499 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 1 2.3789 1.2197 -2.0210 17 6 0.7167 0.2759 -3.0691 18 6 1.0130 -0.2386 -4.5110 19 1 0.2808 0.0299 -5.2726 20 6 1.2839 -1.7638 -4.3333 21 6 2.6703 -1.8127 -3.6083 22 6 3.0753 -0.3188 -3.4204 23 1 4.1311 -0.1200 -3.2363 24 6 2.4673 0.3125 -4.7224 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7516 -1.7715 1.2055 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4369 1.3574 32 1 7.2195 -0.8004 2.1922 33 1 2.9173 -1.1204 -1.0288 34 1 -0.0011 -0.3774 -2.5730 35 1 0.3419 1.2990 -3.0983 36 1 0.5028 -2.2202 -3.7253 37 1 1.3459 -2.2544 -5.3046 38 1 3.4056 -2.3313 -4.2236 39 1 2.5714 -2.3043 -2.6404 40 1 2.9291 -0.0880 -5.6249 41 1 2.4986 1.4019 -4.7030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:57 Heat of formation + Delta-G solvation = -33.700173 kcal Electronic energy + Delta-G solvation = -17624.831379 eV Core-core repulsion = 15116.719256 eV Total energy + Delta-G solvation = -2508.112123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18757 -37.94218 -35.15750 -32.73538 -30.98910 -30.59609 -29.17176 -27.55263 -26.60901 -23.27746 -22.61457 -21.27706 -20.68347 -19.44862 -18.51779 -17.17037 -16.78365 -16.55902 -16.46700 -15.44954 -14.68464 -14.62572 -14.39673 -13.84997 -13.49089 -13.19642 -13.15803 -13.00226 -12.82708 -12.78101 -12.37441 -12.19962 -12.13537 -11.85335 -11.84111 -11.73662 -11.57894 -11.42113 -11.35379 -11.24019 -10.89281 -10.67132 -10.55436 -9.26273 -8.21283 -6.32283 1.38552 1.41476 1.49366 2.39807 3.11470 3.28536 3.59332 3.66007 3.81012 4.09083 4.27916 4.36315 4.39952 4.42907 4.47996 4.53125 4.64796 4.69093 4.77300 4.79814 4.91407 4.97689 5.01025 5.06996 5.08115 5.19355 5.20829 5.24144 5.27066 5.35922 5.42640 5.46947 5.48519 5.54616 5.65007 5.71100 5.82726 6.23934 6.34891 6.50165 6.84001 7.36946 8.89982 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033064 B = 0.005603 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.642428 B = 4995.894040 C = 5447.116678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.087 3.913 3 H 0.020 0.980 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.544 4.544 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.672 5.672 15 C 0.080 3.920 16 H 0.024 0.976 17 C -0.106 4.106 18 C -0.096 4.096 19 H 0.115 0.885 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.118 4.118 23 H 0.080 0.920 24 C -0.115 4.115 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.055 0.945 30 H -0.002 1.002 31 H -0.020 1.020 32 H 0.263 0.737 33 H 0.336 0.664 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 1.184 -13.188 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 H 0.038 0.962 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.582 4.582 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.193 1.193 14 N -0.305 5.305 15 C -0.030 4.030 16 H 0.042 0.958 17 C -0.144 4.144 18 C -0.114 4.114 19 H 0.133 0.867 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.137 4.137 23 H 0.098 0.902 24 C -0.153 4.153 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.016 0.984 31 H -0.001 1.001 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.458 0.958 -13.353 17.621 hybrid contribution 1.752 0.300 1.316 2.211 sum -9.707 1.258 -12.037 15.514 Atomic orbital electron populations 1.21800 0.93206 1.02080 1.01561 1.21585 0.96507 0.94504 0.89724 0.96185 1.21645 0.96103 0.99807 0.96353 1.18977 0.92169 0.94218 0.95429 1.21662 0.92580 1.34620 1.09346 0.92393 1.25952 0.97303 0.96296 1.00060 1.70081 1.02757 1.45353 1.39052 0.85528 0.77015 0.79276 0.79400 1.19168 1.20797 1.19262 1.60920 1.33098 1.32260 1.04173 1.22693 0.96657 0.92819 0.90801 0.95839 1.22758 0.95664 1.00698 0.95296 1.23589 0.96562 0.95117 0.96141 0.86726 1.22819 0.96089 0.95944 0.99653 1.22806 0.97114 0.95001 1.00553 1.23729 0.97175 0.97023 0.95766 0.90189 1.23497 0.95743 0.99700 0.96314 0.92420 0.91693 0.92339 0.92728 0.92645 0.98364 1.00139 0.92818 0.84401 0.90730 0.91908 0.92061 0.91207 0.92315 0.92083 0.90247 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.82 71.98 0.64 -3.03 16 2 C 0.09 3.08 2.65 44.91 0.12 3.20 16 3 H 0.02 0.77 7.47 -2.39 -0.02 0.76 16 4 C -0.10 -4.30 4.74 30.60 0.15 -4.15 16 5 C 0.03 1.56 4.80 29.85 0.14 1.71 16 6 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 10 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 N -0.67 -22.90 4.78 -461.57 -2.21 -25.10 16 15 C 0.08 2.37 2.90 46.47 0.13 2.51 16 16 H 0.02 0.77 7.50 -2.39 -0.02 0.75 16 17 C -0.11 -2.50 4.65 32.15 0.15 -2.35 16 18 C -0.10 -1.88 5.14 -7.38 -0.04 -1.92 16 19 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 20 C -0.11 -2.31 6.36 32.84 0.21 -2.10 16 21 C -0.12 -3.07 6.10 32.84 0.20 -2.87 16 22 C -0.12 -3.22 4.81 -7.38 -0.04 -3.25 16 23 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 24 C -0.11 -2.40 6.43 33.36 0.21 -2.19 16 25 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.06 1.64 5.90 -2.39 -0.01 1.63 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.00 -0.10 6.43 -2.39 -0.02 -0.12 16 31 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 32 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.34 13.28 5.54 -89.69 -0.50 12.78 16 34 H 0.07 1.86 6.18 -2.39 -0.01 1.84 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.39 7.82 -2.39 -0.02 1.38 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.88 6.33 -2.39 -0.02 1.87 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.21 307.84 3.16 -59.04 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.48 Total: 21.41 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 2.57 Total: -45.19 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.92 Total: -82.13 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.21 3.16 -59.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.345 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds