Wall clock time and date at job start Thu Apr 9 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46911 * 2 1 4 4 C 1.53002 * 109.47254 * 119.99753 * 2 1 3 5 5 C 1.53003 * 109.47020 * 62.58598 * 4 2 1 6 6 C 1.50701 * 109.46869 * 180.96089 * 5 4 2 7 7 H 1.08000 * 120.00102 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99709 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00004 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99914 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47415 * 89.99505 * 10 8 6 12 12 H 1.48493 * 109.47367 * 209.99866 * 10 8 6 13 13 H 1.48506 * 109.47238 * 329.99706 * 10 8 6 14 14 N 1.46900 * 109.46803 * 239.99651 * 2 1 3 15 15 C 1.46817 * 110.99544 * 181.84863 * 14 2 1 16 16 C 1.53266 * 109.43552 * 170.77299 * 15 14 2 17 17 C 1.53224 * 108.61877 * 55.59169 * 16 15 14 18 18 C 1.52732 * 117.80593 * 94.12080 * 17 16 15 19 19 C 1.52737 * 117.80515 * 163.12263 * 17 16 15 20 20 C 1.53215 * 114.75647 * 308.61718 * 17 16 15 21 21 C 1.46819 * 111.00019 * 57.17712 * 14 2 1 22 22 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47071 * 299.99905 * 1 2 3 24 24 H 1.08999 * 109.47673 * 59.99890 * 1 2 3 25 25 H 1.08996 * 109.47159 * 182.58997 * 4 2 1 26 26 H 1.09008 * 109.46900 * 302.58855 * 4 2 1 27 27 H 1.08993 * 109.47040 * 300.95781 * 5 4 2 28 28 H 1.09004 * 109.46910 * 60.95930 * 5 4 2 29 29 H 0.97004 * 120.00069 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.48451 * 290.76008 * 15 14 2 31 31 H 1.08996 * 109.47924 * 50.78581 * 15 14 2 32 32 H 1.08997 * 109.61155 * 295.85579 * 16 15 14 33 33 H 1.08995 * 109.61235 * 175.33039 * 16 15 14 34 34 H 1.09001 * 117.50468 * 215.24575 * 18 17 16 35 35 H 1.08995 * 117.50811 * 0.30699 * 18 17 16 36 36 H 1.08994 * 117.51031 * 359.69510 * 19 17 16 37 37 H 1.09009 * 117.50191 * 144.72134 * 19 17 16 38 38 H 1.08994 * 109.61477 * 291.64900 * 20 17 16 39 39 H 1.09003 * 109.61301 * 171.12380 * 20 17 16 40 40 H 1.09003 * 109.47506 * 309.21795 * 21 14 2 41 41 H 1.09003 * 109.47570 * 69.22824 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5839 -2.1813 1.2172 6 6 2.0662 -2.8856 2.4591 7 1 2.6410 -2.3459 3.1972 8 6 1.7746 -4.2193 2.6525 9 7 1.0751 -4.8765 1.7535 10 14 2.3731 -5.0925 4.1916 11 1 1.3494 -4.9695 5.2603 12 1 2.6024 -6.5280 3.8887 13 1 3.6433 -4.4742 4.6493 14 7 2.0196 -0.6926 -1.1994 15 6 3.4866 -0.7506 -1.2114 16 6 3.9513 -1.6713 -2.3451 17 6 3.3489 -1.1691 -3.6614 18 6 4.1913 -0.2239 -4.5156 19 6 3.9677 -1.6697 -4.9649 20 6 1.8336 -0.9448 -3.6292 21 6 1.4945 -0.0670 -2.4194 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1290 -0.6811 1.2728 26 1 1.6393 -0.2348 2.1387 27 1 0.4954 -2.2210 1.1766 28 1 1.9986 -2.6722 0.3367 29 1 0.8696 -5.8147 1.8898 30 1 3.8887 0.2503 -1.3683 31 1 3.8427 -1.1401 -0.2578 32 1 3.6119 -2.6890 -2.1522 33 1 5.0392 -1.6518 -2.4096 34 1 3.6687 0.5601 -5.0636 35 1 5.1819 0.0408 -4.1459 36 1 4.8111 -2.3561 -4.8909 37 1 3.2977 -1.8373 -5.8084 38 1 1.3236 -1.9038 -3.5397 39 1 1.5184 -0.4438 -4.5445 40 1 0.4125 0.0371 -2.3377 41 1 1.9456 0.9172 -2.5463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172495082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:05 Heat of formation + Delta-G solvation = 11.025755 kcal Electronic energy + Delta-G solvation = -17726.404942 eV Core-core repulsion = 15220.232281 eV Total energy + Delta-G solvation = -2506.172662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48204 -37.03813 -33.60889 -32.10902 -30.93766 -29.10715 -27.67434 -25.26592 -22.79392 -22.62797 -22.11036 -21.38814 -18.84924 -18.17708 -16.26272 -15.84214 -15.21136 -14.58579 -14.39295 -14.04402 -13.90982 -13.78726 -12.74944 -12.51093 -12.43337 -12.06245 -11.66650 -11.59762 -11.54296 -11.43090 -11.02745 -10.92198 -10.84117 -10.76619 -10.47962 -10.39996 -9.87543 -9.76006 -9.46014 -9.44112 -9.10423 -8.83265 -8.18959 -7.65130 -5.86244 -3.87344 3.37934 3.44269 3.47351 3.86089 4.34530 4.55786 4.73056 4.89487 5.02539 5.11412 5.42649 5.48934 5.50680 5.60907 5.65635 5.73343 5.74944 5.80027 5.85286 5.91436 5.93624 6.08573 6.14932 6.15673 6.24226 6.33767 6.42150 6.48352 6.50592 6.62310 6.67604 6.83503 6.88081 7.32494 7.68350 7.73429 7.89461 8.12045 8.26797 8.60333 9.22167 9.75050 11.24470 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.006280 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.545182 B = 4457.620118 C = 4953.464840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.020 0.980 4 C -0.108 4.108 5 C 0.032 3.968 6 C -0.520 4.520 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.519 5.519 15 C 0.060 3.940 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.181 4.181 19 C -0.178 4.178 20 C -0.076 4.076 21 C 0.056 3.944 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.015 0.985 28 H 0.032 0.968 29 H 0.258 0.742 30 H 0.020 0.980 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 9.655 -11.357 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.038 0.962 4 C -0.146 4.146 5 C -0.005 4.005 6 C -0.559 4.559 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.244 5.244 15 C -0.068 4.068 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.218 4.218 19 C -0.215 4.215 20 C -0.114 4.114 21 C -0.072 4.072 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.912 9.011 -11.371 14.798 hybrid contribution 0.666 0.289 0.789 1.072 sum 3.578 9.300 -10.582 14.535 Atomic orbital electron populations 1.21941 0.94949 1.03396 1.00013 1.21664 0.95391 0.93937 0.91218 0.96239 1.21776 0.99117 1.00218 0.93497 1.19015 0.96453 0.88239 0.96785 1.21380 1.33692 0.95095 1.05720 0.93261 1.24975 0.95483 0.97635 0.96192 1.69978 1.39436 1.09457 1.34390 0.86720 0.79107 0.78953 0.83927 1.20860 1.21362 1.20077 1.61677 1.08346 1.53387 1.01007 1.22086 0.87836 0.97146 0.99730 1.21207 0.98319 1.00509 0.91482 1.21518 0.94767 1.02856 0.92229 1.22992 1.01226 0.93152 1.04396 1.22935 1.03322 0.96934 0.98341 1.21188 0.92577 1.00815 0.96832 1.22117 1.00133 0.94711 0.90256 0.90481 0.92810 0.93830 0.93557 0.93299 0.96623 0.94952 0.93276 0.96136 0.89313 0.90103 0.92087 0.89390 0.89269 0.89034 0.89163 0.90456 0.92222 0.90473 0.95942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.61 37.16 0.32 -2.12 16 2 C 0.09 1.52 2.38 -67.71 -0.16 1.36 16 3 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.11 -2.28 4.43 -26.73 -0.12 -2.40 16 5 C 0.03 0.83 4.50 -27.88 -0.13 0.71 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 10 Si 0.88 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 N -0.52 -8.99 3.60 -226.45 -0.82 -9.81 16 15 C 0.06 0.99 5.21 -3.73 -0.02 0.97 16 16 C -0.08 -1.16 5.87 -26.48 -0.16 -1.32 16 17 C -0.11 -1.50 2.02 -154.55 -0.31 -1.81 16 18 C -0.18 -2.04 9.92 -26.85 -0.27 -2.31 16 19 C -0.18 -2.04 10.00 -26.84 -0.27 -2.30 16 20 C -0.08 -1.03 5.87 -26.48 -0.16 -1.18 16 21 C 0.06 0.81 5.26 -3.73 -0.02 0.80 16 22 H 0.08 1.49 6.47 -51.93 -0.34 1.15 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.62 6.17 -51.93 -0.32 0.30 16 25 H 0.05 0.96 6.32 -51.93 -0.33 0.63 16 26 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.02 0.43 6.44 -51.93 -0.33 0.10 16 28 H 0.03 0.90 7.51 -51.93 -0.39 0.51 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.02 0.32 8.11 -51.93 -0.42 -0.10 16 31 H 0.09 1.63 5.85 -51.93 -0.30 1.33 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.08 1.09 5.77 -51.93 -0.30 0.79 16 41 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -29.95 312.61 -9.42 -39.37 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.34 Total: -1.46 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -1.69 Total: -23.29 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.08 Total: -36.34 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.95 -9.42 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.395 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds