Wall clock time and date at job start Thu Apr 9 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46911 * 2 1 4 4 C 1.53002 * 109.47254 * 119.99753 * 2 1 3 5 5 C 1.53003 * 109.47020 * 62.58598 * 4 2 1 6 6 C 1.50701 * 109.46869 * 180.96089 * 5 4 2 7 7 H 1.08000 * 120.00102 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99709 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00004 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99914 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47415 * 89.99505 * 10 8 6 12 12 H 1.48493 * 109.47367 * 209.99866 * 10 8 6 13 13 H 1.48506 * 109.47238 * 329.99706 * 10 8 6 14 14 N 1.46900 * 109.46803 * 239.99651 * 2 1 3 15 15 C 1.46817 * 110.99544 * 181.84863 * 14 2 1 16 16 C 1.53266 * 109.43552 * 170.77299 * 15 14 2 17 17 C 1.53224 * 108.61877 * 55.59169 * 16 15 14 18 18 C 1.52732 * 117.80593 * 94.12080 * 17 16 15 19 19 C 1.52737 * 117.80515 * 163.12263 * 17 16 15 20 20 C 1.53215 * 114.75647 * 308.61718 * 17 16 15 21 21 C 1.46819 * 111.00019 * 57.17712 * 14 2 1 22 22 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47071 * 299.99905 * 1 2 3 24 24 H 1.08999 * 109.47673 * 59.99890 * 1 2 3 25 25 H 1.08996 * 109.47159 * 182.58997 * 4 2 1 26 26 H 1.09008 * 109.46900 * 302.58855 * 4 2 1 27 27 H 1.08993 * 109.47040 * 300.95781 * 5 4 2 28 28 H 1.09004 * 109.46910 * 60.95930 * 5 4 2 29 29 H 0.97004 * 120.00069 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.48451 * 290.76008 * 15 14 2 31 31 H 1.08996 * 109.47924 * 50.78581 * 15 14 2 32 32 H 1.08997 * 109.61155 * 295.85579 * 16 15 14 33 33 H 1.08995 * 109.61235 * 175.33039 * 16 15 14 34 34 H 1.09001 * 117.50468 * 215.24575 * 18 17 16 35 35 H 1.08995 * 117.50811 * 0.30699 * 18 17 16 36 36 H 1.08994 * 117.51031 * 359.69510 * 19 17 16 37 37 H 1.09009 * 117.50191 * 144.72134 * 19 17 16 38 38 H 1.08994 * 109.61477 * 291.64900 * 20 17 16 39 39 H 1.09003 * 109.61301 * 171.12380 * 20 17 16 40 40 H 1.09003 * 109.47506 * 309.21795 * 21 14 2 41 41 H 1.09003 * 109.47570 * 69.22824 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5839 -2.1813 1.2172 6 6 2.0662 -2.8856 2.4591 7 1 2.6410 -2.3459 3.1972 8 6 1.7746 -4.2193 2.6525 9 7 1.0751 -4.8765 1.7535 10 14 2.3731 -5.0925 4.1916 11 1 1.3494 -4.9695 5.2603 12 1 2.6024 -6.5280 3.8887 13 1 3.6433 -4.4742 4.6493 14 7 2.0196 -0.6926 -1.1994 15 6 3.4866 -0.7506 -1.2114 16 6 3.9513 -1.6713 -2.3451 17 6 3.3489 -1.1691 -3.6614 18 6 4.1913 -0.2239 -4.5156 19 6 3.9677 -1.6697 -4.9649 20 6 1.8336 -0.9448 -3.6292 21 6 1.4945 -0.0670 -2.4194 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1290 -0.6811 1.2728 26 1 1.6393 -0.2348 2.1387 27 1 0.4954 -2.2210 1.1766 28 1 1.9986 -2.6722 0.3367 29 1 0.8696 -5.8147 1.8898 30 1 3.8887 0.2503 -1.3683 31 1 3.8427 -1.1401 -0.2578 32 1 3.6119 -2.6890 -2.1522 33 1 5.0392 -1.6518 -2.4096 34 1 3.6687 0.5601 -5.0636 35 1 5.1819 0.0408 -4.1459 36 1 4.8111 -2.3561 -4.8909 37 1 3.2977 -1.8373 -5.8084 38 1 1.3236 -1.9038 -3.5397 39 1 1.5184 -0.4438 -4.5445 40 1 0.4125 0.0371 -2.3377 41 1 1.9456 0.9172 -2.5463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172495082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:05 Heat of formation + Delta-G solvation = -5.126141 kcal Electronic energy + Delta-G solvation = -17727.105341 eV Core-core repulsion = 15220.232281 eV Total energy + Delta-G solvation = -2506.873060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66522 -38.29270 -35.45256 -33.86436 -32.19916 -30.77893 -28.97755 -27.13774 -24.32029 -23.78065 -23.36611 -22.75381 -20.31116 -19.38540 -18.44932 -17.19448 -16.46086 -16.17460 -15.88395 -15.57014 -15.16466 -14.96170 -14.21589 -14.12731 -13.86619 -13.64417 -13.26595 -13.05264 -12.90618 -12.76236 -12.53139 -12.40572 -12.29237 -12.10939 -12.03795 -11.92958 -11.56846 -11.17635 -11.03313 -10.82295 -10.77076 -10.46097 -10.42919 -8.95384 -8.11437 -6.21295 1.39787 1.41044 1.51705 2.44493 2.88950 3.09682 3.20977 3.72734 3.86029 4.01007 4.08889 4.12191 4.20365 4.33621 4.48068 4.53656 4.57900 4.64294 4.69389 4.81082 4.84257 4.90360 4.94605 4.96690 5.06107 5.09883 5.12635 5.16254 5.27815 5.31114 5.35223 5.37943 5.40561 5.53257 5.64356 5.97609 6.08029 6.35020 6.40335 6.45572 6.99571 7.46268 8.99530 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.006280 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.545182 B = 4457.620118 C = 4953.464840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.090 3.910 3 H 0.042 0.958 4 C -0.099 4.099 5 C 0.047 3.953 6 C -0.543 4.543 7 H 0.052 0.948 8 C 0.002 3.998 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.544 5.544 15 C 0.064 3.936 16 C -0.074 4.074 17 C -0.136 4.136 18 C -0.163 4.163 19 C -0.173 4.173 20 C -0.073 4.073 21 C 0.057 3.943 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.051 0.949 27 H -0.011 1.011 28 H 0.003 0.997 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 11.119 -11.964 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.010 3.990 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.190 1.190 14 N -0.270 5.270 15 C -0.064 4.064 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.199 4.199 19 C -0.209 4.209 20 C -0.110 4.110 21 C -0.070 4.070 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.008 0.992 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.636 10.490 -11.979 16.333 hybrid contribution 0.441 -0.181 0.954 1.067 sum 4.077 10.308 -11.025 15.635 Atomic orbital electron populations 1.21875 0.94277 1.01668 1.01876 1.21554 0.95876 0.94346 0.89992 0.94064 1.21612 0.99123 0.97273 0.95715 1.18764 0.94410 0.91213 0.94653 1.21836 1.33793 0.95865 1.06673 0.93004 1.25886 0.95506 0.98537 0.99638 1.70123 1.40592 1.09848 1.36534 0.85578 0.78971 0.77585 0.79676 1.19874 1.20878 1.19004 1.61631 1.08907 1.54487 1.01950 1.21997 0.87608 0.97970 0.98847 1.21112 0.99191 0.98334 0.92519 1.21424 0.94789 1.05465 0.91929 1.23053 1.00951 0.93206 1.02722 1.23014 1.03194 0.97420 0.97318 1.21154 0.92703 0.99726 0.97447 1.22171 1.00265 0.95302 0.89285 0.93903 0.91886 0.91050 0.93549 0.93076 0.99239 0.97867 0.93117 0.94580 0.92193 0.93566 0.90694 0.87855 0.88698 0.88877 0.87996 0.92787 0.89596 0.90143 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.61 71.98 0.62 -3.99 16 2 C 0.09 3.16 2.38 44.92 0.11 3.26 16 3 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.10 -4.25 4.43 30.60 0.14 -4.11 16 5 C 0.05 2.53 4.50 29.85 0.13 2.67 16 6 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 7 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 8 C 0.00 0.10 5.46 84.66 0.46 0.57 16 9 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 10 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 N -0.54 -18.86 3.60 -870.35 -3.13 -21.99 16 15 C 0.06 2.10 5.21 86.41 0.45 2.55 16 16 C -0.07 -2.24 5.87 30.76 0.18 -2.06 16 17 C -0.14 -3.39 2.02 -52.21 -0.11 -3.50 16 18 C -0.16 -3.17 9.92 30.52 0.30 -2.86 16 19 C -0.17 -3.56 10.00 30.52 0.31 -3.26 16 20 C -0.07 -1.85 5.87 30.75 0.18 -1.67 16 21 C 0.06 1.58 5.26 86.41 0.45 2.03 16 22 H 0.04 1.70 6.47 -2.39 -0.02 1.68 16 23 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.07 1.93 6.17 -2.39 -0.01 1.92 16 25 H 0.05 1.96 6.32 -2.39 -0.02 1.94 16 26 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 27 H -0.01 -0.63 6.44 -2.39 -0.02 -0.65 16 28 H 0.00 0.17 7.51 -2.38 -0.02 0.16 16 29 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.04 1.07 8.11 -2.39 -0.02 1.05 16 31 H 0.06 2.29 5.85 -2.39 -0.01 2.27 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 40 H 0.08 2.13 5.77 -2.39 -0.01 2.12 16 41 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 Total: -1.00 -65.72 312.61 3.61 -62.11 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.97 Total: 12.47 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 3.46 Total: -42.13 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.85 Total: -80.14 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -65.72 3.61 -62.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.988 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds