Wall clock time and date at job start Thu Apr 9 2020 12:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52990 * 109.46831 * 240.00082 * 2 1 3 5 5 C 1.53002 * 109.47502 * 65.33730 * 4 2 1 6 6 C 1.50705 * 109.47063 * 176.87423 * 5 4 2 7 7 H 1.07998 * 120.00274 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99435 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00461 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99594 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47318 * 89.99644 * 10 8 6 12 12 H 1.48509 * 109.46952 * 209.99573 * 10 8 6 13 13 H 1.48502 * 109.47345 * 329.99385 * 10 8 6 14 14 N 1.46898 * 109.46998 * 119.99786 * 2 1 3 15 15 C 1.47998 * 110.99803 * 60.59476 * 14 2 1 16 16 C 1.54280 * 107.04949 * 145.63434 * 15 14 2 17 17 C 1.53372 * 104.86815 * 357.92620 * 16 15 14 18 18 C 1.52493 * 116.17281 * 210.31465 * 17 16 15 19 19 C 1.54022 * 86.67823 * 216.74001 * 18 17 16 20 20 C 1.52500 * 116.16309 * 108.34188 * 17 16 15 21 21 C 1.48768 * 110.99947 * 178.25279 * 14 2 1 22 22 H 1.08994 * 109.47579 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46965 * 300.00424 * 1 2 3 24 24 H 1.09008 * 109.46952 * 59.99704 * 1 2 3 25 25 H 1.09002 * 109.47184 * 185.33236 * 4 2 1 26 26 H 1.08999 * 109.47358 * 305.32918 * 4 2 1 27 27 H 1.09006 * 109.46521 * 296.86395 * 5 4 2 28 28 H 1.09000 * 109.47359 * 56.86896 * 5 4 2 29 29 H 0.96997 * 120.00209 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.91846 * 26.28452 * 15 14 2 31 31 H 1.09000 * 110.08763 * 265.07570 * 15 14 2 32 32 H 1.09005 * 110.37469 * 116.80373 * 16 15 14 33 33 H 1.09004 * 110.38098 * 239.04386 * 16 15 14 34 34 H 1.08999 * 113.67989 * 331.18388 * 18 17 16 35 35 H 1.08997 * 113.67747 * 102.29647 * 18 17 16 36 36 H 1.09002 * 113.57277 * 269.85463 * 19 18 17 37 37 H 1.08995 * 113.57689 * 139.07641 * 19 18 17 38 38 H 1.08993 * 113.67907 * 257.71836 * 20 17 16 39 39 H 1.09002 * 113.67846 * 28.82840 * 20 17 16 40 40 H 1.09005 * 110.68645 * 319.97366 * 21 14 2 41 41 H 1.08997 * 110.69119 * 82.99536 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6425 0.0733 -2.4949 6 6 2.2102 -0.5960 -3.7200 7 1 2.7963 -1.4976 -3.6201 8 6 1.9814 -0.0572 -4.9683 9 7 1.2672 1.0404 -5.0900 10 14 2.6857 -0.8865 -6.4868 11 1 1.7092 -1.8762 -7.0082 12 1 2.9576 0.1367 -7.5283 13 1 3.9503 -1.5789 -6.1311 14 7 2.0197 -0.6924 1.1995 15 6 1.5568 -2.0979 1.2265 16 6 2.6801 -2.9316 1.8773 17 6 3.8038 -1.9264 2.1584 18 6 5.2252 -2.4772 2.1158 19 6 5.5344 -1.5224 3.2842 20 6 4.0324 -1.5653 3.6223 21 6 3.5062 -0.7491 1.2129 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1258 -0.8047 -1.2028 26 1 1.6008 -1.7176 -1.2982 27 1 0.5557 0.1093 -2.5713 28 1 2.0353 1.0873 -2.4198 29 1 1.1066 1.4196 -5.9682 30 1 1.3751 -2.4487 0.2106 31 1 0.6440 -2.1802 1.8164 32 1 2.3300 -3.3795 2.8074 33 1 3.0253 -3.7048 1.1909 34 1 5.2941 -3.5319 2.3824 35 1 5.7614 -2.2345 1.1984 36 1 5.8812 -0.5399 2.9641 37 1 6.1672 -1.9652 4.0532 38 1 3.6192 -0.5969 3.9039 39 1 3.7626 -2.3610 4.3167 40 1 3.8929 -0.9519 0.2141 41 1 3.9234 0.1784 1.6049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:27 Heat of formation + Delta-G solvation = 8.390825 kcal Electronic energy + Delta-G solvation = -17553.824353 eV Core-core repulsion = 15047.537432 eV Total energy + Delta-G solvation = -2506.286921 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34029 -37.38576 -33.81074 -32.26732 -29.65893 -28.83151 -26.76486 -25.72661 -25.07540 -22.92320 -21.77975 -21.13421 -18.65746 -18.26007 -16.46707 -15.49621 -15.33991 -15.14630 -14.41323 -14.23801 -14.13237 -13.37200 -13.01576 -12.62462 -12.41361 -12.16142 -11.97760 -11.86023 -11.50250 -11.21297 -11.10570 -11.00829 -10.83759 -10.61009 -10.54186 -10.35674 -10.25545 -10.11502 -9.99381 -9.46474 -9.39697 -9.12913 -8.32732 -7.81008 -5.99081 -4.01454 3.31283 3.37588 3.40857 4.26948 4.46086 4.50941 4.63040 4.73700 4.89195 5.09333 5.34383 5.36136 5.42105 5.54600 5.62019 5.69716 5.74995 5.77939 5.89998 5.90497 5.93603 5.98324 6.01861 6.12796 6.17436 6.28668 6.37059 6.38677 6.43169 6.47403 6.63945 6.70856 6.84085 7.13038 7.30213 7.53091 7.68934 7.84498 8.00847 8.44403 9.05511 9.62466 11.11896 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.005573 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.488360 B = 5023.256300 C = 5513.856476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.078 0.922 4 C -0.142 4.142 5 C 0.026 3.974 6 C -0.520 4.520 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 N -0.512 5.512 15 C 0.030 3.970 16 C -0.117 4.117 17 C -0.082 4.082 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.121 4.121 21 C 0.051 3.949 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -5.710 15.881 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.096 0.904 4 C -0.180 4.180 5 C -0.012 4.012 6 C -0.558 4.558 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.717 3.283 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 N -0.235 5.235 15 C -0.098 4.098 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.169 4.169 19 C -0.179 4.179 20 C -0.158 4.158 21 C -0.077 4.077 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.982 -5.279 16.199 17.496 hybrid contribution 0.618 -0.860 -1.744 2.040 sum 4.599 -6.138 14.454 16.363 Atomic orbital electron populations 1.21809 0.94653 1.01491 1.01653 1.21926 0.95685 0.98279 0.88128 0.90421 1.22295 0.99745 0.99688 0.96307 1.19068 0.96832 0.94920 0.90348 1.21268 1.32681 1.10289 0.91607 0.92991 1.25010 0.95320 0.94995 0.99040 1.69959 1.39514 1.20415 1.23573 0.86636 0.79462 0.79209 0.82946 1.20682 1.21193 1.19962 1.65077 1.06799 1.13428 1.38222 1.22930 0.97806 0.88757 1.00337 1.22245 0.95265 0.97461 1.00511 1.21839 0.94253 0.96030 0.96098 1.22781 0.95958 0.99090 0.99043 1.22902 0.96759 0.99951 0.98274 1.22712 0.95736 1.01899 0.95461 1.22971 0.89402 0.97084 0.98245 0.93287 0.93153 0.91286 0.93028 0.93188 0.96234 0.96755 0.93030 0.92539 0.91184 0.91527 0.91591 0.90232 0.91292 0.90268 0.91909 0.91047 0.90540 0.92000 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.86 37.16 0.33 -2.02 16 2 C 0.07 1.21 2.53 -67.72 -0.17 1.04 16 3 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 4 C -0.14 -2.96 4.00 -26.74 -0.11 -3.06 16 5 C 0.03 0.67 4.66 -27.88 -0.13 0.54 16 6 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 10 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.51 -8.04 5.32 -222.70 -1.18 -9.23 16 15 C 0.03 0.43 5.21 -2.55 -0.01 0.42 16 16 C -0.12 -1.45 6.39 -25.87 -0.17 -1.61 16 17 C -0.08 -1.00 1.04 -154.39 -0.16 -1.16 16 18 C -0.13 -1.42 7.41 -26.46 -0.20 -1.61 16 19 C -0.14 -1.40 7.97 -25.69 -0.20 -1.60 16 20 C -0.12 -1.30 7.33 -26.45 -0.19 -1.49 16 21 C 0.05 0.74 5.61 -2.32 -0.01 0.73 16 22 H 0.05 0.80 7.09 -51.93 -0.37 0.43 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.27 6.65 -51.92 -0.35 0.93 16 25 H 0.05 1.09 5.77 -51.93 -0.30 0.79 16 26 H 0.05 1.05 6.18 -51.93 -0.32 0.73 16 27 H 0.02 0.53 6.73 -51.93 -0.35 0.18 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 0.90 5.36 -51.93 -0.28 0.63 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 40 H 0.06 1.01 5.51 -51.93 -0.29 0.72 16 41 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -29.50 309.67 -9.50 -38.99 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.26 Total: -1.45 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.44 Total: -23.48 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.45 Total: -35.58 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.50 -9.50 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.382 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds