Wall clock time and date at job start Thu Apr 9 2020 12:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52990 * 109.46831 * 240.00082 * 2 1 3 5 5 C 1.53002 * 109.47502 * 65.33730 * 4 2 1 6 6 C 1.50705 * 109.47063 * 176.87423 * 5 4 2 7 7 H 1.07998 * 120.00274 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99435 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00461 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99594 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47318 * 89.99644 * 10 8 6 12 12 H 1.48509 * 109.46952 * 209.99573 * 10 8 6 13 13 H 1.48502 * 109.47345 * 329.99385 * 10 8 6 14 14 N 1.46898 * 109.46998 * 119.99786 * 2 1 3 15 15 C 1.47998 * 110.99803 * 60.59476 * 14 2 1 16 16 C 1.54280 * 107.04949 * 145.63434 * 15 14 2 17 17 C 1.53372 * 104.86815 * 357.92620 * 16 15 14 18 18 C 1.52493 * 116.17281 * 210.31465 * 17 16 15 19 19 C 1.54022 * 86.67823 * 216.74001 * 18 17 16 20 20 C 1.52500 * 116.16309 * 108.34188 * 17 16 15 21 21 C 1.48768 * 110.99947 * 178.25279 * 14 2 1 22 22 H 1.08994 * 109.47579 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46965 * 300.00424 * 1 2 3 24 24 H 1.09008 * 109.46952 * 59.99704 * 1 2 3 25 25 H 1.09002 * 109.47184 * 185.33236 * 4 2 1 26 26 H 1.08999 * 109.47358 * 305.32918 * 4 2 1 27 27 H 1.09006 * 109.46521 * 296.86395 * 5 4 2 28 28 H 1.09000 * 109.47359 * 56.86896 * 5 4 2 29 29 H 0.96997 * 120.00209 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.91846 * 26.28452 * 15 14 2 31 31 H 1.09000 * 110.08763 * 265.07570 * 15 14 2 32 32 H 1.09005 * 110.37469 * 116.80373 * 16 15 14 33 33 H 1.09004 * 110.38098 * 239.04386 * 16 15 14 34 34 H 1.08999 * 113.67989 * 331.18388 * 18 17 16 35 35 H 1.08997 * 113.67747 * 102.29647 * 18 17 16 36 36 H 1.09002 * 113.57277 * 269.85463 * 19 18 17 37 37 H 1.08995 * 113.57689 * 139.07641 * 19 18 17 38 38 H 1.08993 * 113.67907 * 257.71836 * 20 17 16 39 39 H 1.09002 * 113.67846 * 28.82840 * 20 17 16 40 40 H 1.09005 * 110.68645 * 319.97366 * 21 14 2 41 41 H 1.08997 * 110.69119 * 82.99536 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6425 0.0733 -2.4949 6 6 2.2102 -0.5960 -3.7200 7 1 2.7963 -1.4976 -3.6201 8 6 1.9814 -0.0572 -4.9683 9 7 1.2672 1.0404 -5.0900 10 14 2.6857 -0.8865 -6.4868 11 1 1.7092 -1.8762 -7.0082 12 1 2.9576 0.1367 -7.5283 13 1 3.9503 -1.5789 -6.1311 14 7 2.0197 -0.6924 1.1995 15 6 1.5568 -2.0979 1.2265 16 6 2.6801 -2.9316 1.8773 17 6 3.8038 -1.9264 2.1584 18 6 5.2252 -2.4772 2.1158 19 6 5.5344 -1.5224 3.2842 20 6 4.0324 -1.5653 3.6223 21 6 3.5062 -0.7491 1.2129 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1258 -0.8047 -1.2028 26 1 1.6008 -1.7176 -1.2982 27 1 0.5557 0.1093 -2.5713 28 1 2.0353 1.0873 -2.4198 29 1 1.1066 1.4196 -5.9682 30 1 1.3751 -2.4487 0.2106 31 1 0.6440 -2.1802 1.8164 32 1 2.3300 -3.3795 2.8074 33 1 3.0253 -3.7048 1.1909 34 1 5.2941 -3.5319 2.3824 35 1 5.7614 -2.2345 1.1984 36 1 5.8812 -0.5399 2.9641 37 1 6.1672 -1.9652 4.0532 38 1 3.6192 -0.5969 3.9039 39 1 3.7626 -2.3610 4.3167 40 1 3.8929 -0.9519 0.2141 41 1 3.9234 0.1784 1.6049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:26 Heat of formation + Delta-G solvation = -8.427696 kcal Electronic energy + Delta-G solvation = -17554.553659 eV Core-core repulsion = 15047.537432 eV Total energy + Delta-G solvation = -2507.016226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41073 -38.64117 -35.63269 -33.98847 -31.30650 -30.16716 -27.93066 -27.05680 -26.54339 -24.27708 -23.23942 -22.49380 -20.10135 -19.22767 -18.55840 -16.99103 -16.52271 -16.30515 -16.08934 -15.69584 -15.34587 -14.75747 -14.34923 -14.18543 -13.90000 -13.49426 -13.29023 -13.07112 -13.04072 -12.83214 -12.55529 -12.43003 -12.27755 -12.22527 -12.00438 -11.70526 -11.39393 -11.36647 -11.26343 -11.19985 -10.96499 -10.83489 -10.54004 -9.19668 -8.21541 -6.33518 1.36680 1.37960 1.48967 2.38169 3.05797 3.10556 3.53179 3.69549 3.74799 3.99144 4.03368 4.09161 4.22591 4.34948 4.44344 4.52829 4.60687 4.70330 4.72915 4.78502 4.86750 4.91078 4.95700 4.98049 5.02144 5.08800 5.14311 5.15748 5.21465 5.27670 5.30119 5.36080 5.48640 5.53021 5.59865 5.70825 5.82959 6.04726 6.14868 6.24431 6.82861 7.35580 8.89333 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.005573 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.488360 B = 5023.256300 C = 5513.856476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.076 3.924 3 H 0.066 0.934 4 C -0.124 4.124 5 C 0.032 3.968 6 C -0.545 4.545 7 H 0.053 0.947 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.266 1.266 14 N -0.508 5.508 15 C 0.026 3.974 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.115 4.115 21 C 0.047 3.953 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.000 1.000 28 H -0.013 1.013 29 H 0.264 0.736 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 -7.245 17.020 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 H 0.084 0.916 4 C -0.163 4.163 5 C -0.005 4.005 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.190 1.190 14 N -0.231 5.231 15 C -0.102 4.102 16 C -0.150 4.150 17 C -0.086 4.086 18 C -0.167 4.167 19 C -0.173 4.173 20 C -0.152 4.152 21 C -0.080 4.080 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.018 0.982 28 H 0.005 0.995 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.776 -6.822 17.355 19.250 hybrid contribution 0.357 -0.355 -2.085 2.144 sum 5.133 -7.177 15.270 17.636 Atomic orbital electron populations 1.21725 0.93827 1.01877 1.01498 1.21738 0.96314 0.97544 0.87695 0.91562 1.22075 0.99506 0.99115 0.95598 1.18936 0.95245 0.94083 0.92272 1.21680 1.33043 1.10627 0.92953 0.92870 1.25942 0.95502 0.95563 1.02554 1.70087 1.40577 1.21835 1.24626 0.85494 0.79014 0.78290 0.78542 1.19652 1.20511 1.18997 1.65095 1.07584 1.14324 1.36084 1.23009 0.99273 0.88124 0.99764 1.22249 0.94397 0.97128 1.01247 1.21869 0.95154 0.94901 0.96708 1.22811 0.94628 1.00168 0.99120 1.22874 0.96607 0.99625 0.98173 1.22709 0.96128 1.02017 0.94348 1.22994 0.88578 0.98535 0.97922 0.92612 0.91178 0.93475 0.93418 0.93207 0.98199 0.99463 0.92718 0.94374 0.90026 0.89447 0.91558 0.88729 0.92329 0.90697 0.90142 0.91822 0.88909 0.94148 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.86 71.98 0.64 -3.84 16 2 C 0.08 2.75 2.53 44.91 0.11 2.87 16 3 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 4 C -0.12 -5.33 4.00 30.59 0.12 -5.21 16 5 C 0.03 1.74 4.66 29.85 0.14 1.88 16 6 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 7 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 8 C 0.00 0.13 5.46 84.65 0.46 0.60 16 9 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 10 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 14 N -0.51 -15.62 5.32 -858.49 -4.57 -20.19 16 15 C 0.03 0.72 5.21 86.53 0.45 1.17 16 16 C -0.11 -2.53 6.39 31.15 0.20 -2.34 16 17 C -0.09 -1.93 1.04 -52.10 -0.05 -1.99 16 18 C -0.13 -2.53 7.41 30.77 0.23 -2.30 16 19 C -0.14 -2.34 7.97 31.27 0.25 -2.09 16 20 C -0.11 -2.15 7.33 30.77 0.23 -1.92 16 21 C 0.05 1.36 5.61 86.25 0.48 1.85 16 22 H 0.05 1.79 7.09 -2.39 -0.02 1.78 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 1.79 6.65 -2.38 -0.02 1.77 16 25 H 0.05 2.07 5.77 -2.39 -0.01 2.06 16 26 H 0.05 2.13 6.18 -2.39 -0.01 2.11 16 27 H 0.00 -0.02 6.73 -2.38 -0.02 -0.03 16 28 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.04 1.20 5.36 -2.39 -0.01 1.19 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 1.63 7.88 -2.38 -0.02 1.61 16 33 H 0.07 1.49 8.10 -2.38 -0.02 1.48 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 39 H 0.09 1.47 8.02 -2.39 -0.02 1.45 16 40 H 0.04 1.34 5.51 -2.38 -0.01 1.33 16 41 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 Total: -1.00 -63.47 309.67 2.21 -61.27 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.97 Total: 12.04 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 3.49 Total: -42.96 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -4.28 Total: -77.33 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.47 2.21 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.839 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds