Wall clock time and date at job start Thu Apr 9 2020 12:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47441 * 2 1 4 4 C 1.53008 * 109.47137 * 240.00135 * 2 1 3 5 5 C 1.52993 * 109.47069 * 155.24097 * 4 2 1 6 6 C 1.50704 * 109.47172 * 186.55650 * 5 4 2 7 7 H 1.07998 * 119.99491 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00051 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99804 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46893 * 60.00126 * 10 8 6 12 12 H 1.48491 * 109.47131 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46981 * 300.00427 * 10 8 6 14 14 N 1.46898 * 109.47078 * 120.00257 * 2 1 3 15 15 C 1.47006 * 111.00282 * 147.03441 * 14 2 1 16 16 C 1.52959 * 109.58934 * 181.84402 * 15 14 2 17 17 C 1.53067 * 109.62956 * 297.79938 * 16 15 14 18 18 C 1.53284 * 109.11322 * 60.56747 * 17 16 15 19 19 C 1.47001 * 111.00216 * 270.50699 * 14 2 1 20 20 C 1.52827 * 117.75876 * 35.14674 * 19 14 2 21 21 C 1.52864 * 117.68691 * 326.27071 * 19 14 2 22 22 H 1.08995 * 109.47057 * 184.33749 * 1 2 3 23 23 H 1.08995 * 109.46960 * 304.34095 * 1 2 3 24 24 H 1.09004 * 109.47028 * 64.34056 * 1 2 3 25 25 H 1.09007 * 109.46486 * 275.23843 * 4 2 1 26 26 H 1.08997 * 109.46722 * 35.23835 * 4 2 1 27 27 H 1.09004 * 109.47288 * 306.56032 * 5 4 2 28 28 H 1.09002 * 109.47408 * 66.55624 * 5 4 2 29 29 H 0.97010 * 119.99511 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.44798 * 301.87499 * 15 14 2 31 31 H 1.08995 * 109.44621 * 61.80260 * 15 14 2 32 32 H 1.09002 * 109.43772 * 177.75921 * 16 15 14 33 33 H 1.08999 * 109.42039 * 57.83812 * 16 15 14 34 34 H 1.08997 * 109.53756 * 300.67100 * 17 16 15 35 35 H 1.09004 * 109.58932 * 180.48901 * 17 16 15 36 36 H 1.09002 * 109.59996 * 185.84130 * 18 17 16 37 37 H 1.08995 * 109.73314 * 65.44899 * 18 17 16 38 38 H 1.09000 * 117.50772 * 359.84956 * 20 19 14 39 39 H 1.09001 * 117.50097 * 144.88325 * 20 19 14 40 40 H 1.09004 * 117.50239 * 215.22782 * 21 19 14 41 41 H 1.09002 * 117.50802 * 0.27414 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.4450 -0.2202 -1.5896 6 6 3.8830 -0.8086 -2.9061 7 1 3.2249 -1.4731 -3.4461 8 6 5.1235 -0.4977 -3.4215 9 7 5.9246 0.3119 -2.7639 10 14 5.6661 -1.2265 -5.0536 11 1 4.7201 -0.8109 -6.1202 12 1 7.0298 -0.7402 -5.3838 13 1 5.6800 -2.7080 -4.9539 14 7 2.0197 -0.6925 1.1994 15 6 3.2809 -1.3957 0.9238 16 6 3.7369 -2.1418 2.1788 17 6 4.0043 -1.1393 3.3042 18 6 2.7112 -0.3775 3.6155 19 6 2.1838 0.2455 2.3193 20 6 1.1819 1.3933 2.4391 21 6 2.6181 1.6740 1.9914 22 1 -0.3633 -1.0247 0.0777 23 1 -0.3633 0.5797 0.8485 24 1 -0.3633 0.4450 -0.9264 25 1 2.0727 -1.7945 -1.0613 26 1 1.3698 -0.5189 -2.0847 27 1 3.4350 0.8673 -1.6630 28 1 4.1391 -0.5251 -0.8065 29 1 6.7975 0.5303 -3.1264 30 1 3.1295 -2.1082 0.1130 31 1 4.0435 -0.6730 0.6338 32 1 4.6508 -2.6943 1.9604 33 1 2.9577 -2.8375 2.4901 34 1 4.7752 -0.4357 2.9901 35 1 4.3376 -1.6709 4.1956 36 1 2.9159 0.4089 4.3421 37 1 1.9677 -1.0642 4.0200 38 1 0.3978 1.4579 1.6847 39 1 0.8965 1.7095 3.4424 40 1 3.2775 2.1749 2.7002 41 1 2.7788 1.9231 0.9425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:30 Heat of formation + Delta-G solvation = 31.401395 kcal Electronic energy + Delta-G solvation = -18158.799340 eV Core-core repulsion = 15653.510233 eV Total energy + Delta-G solvation = -2505.289107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06017 -35.52354 -34.67733 -32.82945 -30.31071 -29.52108 -27.75853 -25.13331 -23.69108 -22.21107 -21.35163 -21.07646 -19.62736 -18.10191 -16.42555 -16.11107 -15.48442 -14.48779 -14.35023 -13.76026 -13.53852 -13.40255 -13.08008 -12.40059 -12.37158 -12.28525 -11.86520 -11.78921 -11.40739 -11.18827 -10.99215 -10.84887 -10.74182 -10.52215 -10.50883 -10.16983 -10.10970 -9.79702 -9.69115 -9.37760 -9.16077 -8.93871 -8.30500 -7.52958 -5.98744 -4.00252 3.33333 3.37798 3.40386 3.95493 4.38266 4.46725 4.88610 5.00325 5.13221 5.24159 5.36228 5.39748 5.49353 5.58913 5.70280 5.72649 5.79978 5.94699 5.95902 6.03578 6.09469 6.19242 6.21903 6.23936 6.30647 6.36466 6.42183 6.49289 6.59536 6.65076 6.65925 6.75423 7.00101 7.12402 7.62019 7.67994 7.70810 7.89482 8.01702 8.44787 9.06075 9.63021 11.12087 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.007029 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.220255 B = 3982.681956 C = 4351.501911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.058 0.942 4 C -0.118 4.118 5 C 0.006 3.994 6 C -0.519 4.519 7 H 0.053 0.947 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.490 5.490 15 C 0.040 3.960 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.071 4.071 19 C 0.057 3.943 20 C -0.189 4.189 21 C -0.219 4.219 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.009 0.991 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 -0.564 11.763 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 H 0.075 0.925 4 C -0.156 4.156 5 C -0.031 4.031 6 C -0.557 4.557 7 H 0.071 0.929 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.213 5.213 15 C -0.087 4.087 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.108 4.108 19 C -0.034 4.034 20 C -0.226 4.226 21 C -0.258 4.258 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.148 -0.868 11.863 13.877 hybrid contribution 0.978 0.388 -1.242 1.628 sum -6.170 -0.480 10.621 12.292 Atomic orbital electron populations 1.22104 0.95571 1.01867 1.00604 1.22056 0.94657 0.97709 0.90030 0.92458 1.22017 0.99979 0.99498 0.94072 1.19621 0.90300 0.96093 0.97060 1.21233 1.00718 1.28153 1.05646 0.92904 1.25000 0.96776 0.95240 0.97342 1.69955 1.09275 1.35567 1.38690 0.86697 0.77658 0.79531 0.84355 1.20323 1.21335 1.20263 1.62259 1.28459 1.25824 1.04742 1.22709 0.90492 0.98394 0.97091 1.21604 1.00778 0.97866 0.95367 1.21575 0.97232 0.98383 0.98474 1.21081 0.97059 0.99034 0.93667 1.21749 1.01681 0.85863 0.94096 1.23509 0.93742 1.02608 1.02722 1.23555 0.97554 1.01968 1.02718 0.92419 0.92569 0.92897 0.92181 0.92829 0.97236 0.94577 0.93044 0.89076 0.91991 0.91761 0.91852 0.92020 0.92314 0.91958 0.91248 0.87306 0.89223 0.89314 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.06 37.16 0.34 -1.85 16 2 C 0.06 1.12 1.99 -67.71 -0.13 0.99 16 3 H 0.06 1.09 4.50 -51.93 -0.23 0.86 16 4 C -0.12 -2.46 4.27 -26.73 -0.11 -2.57 16 5 C 0.01 0.15 4.40 -27.88 -0.12 0.02 16 6 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.49 -8.29 4.68 -211.04 -0.99 -9.28 16 15 C 0.04 0.71 3.78 -3.79 -0.01 0.70 16 16 C -0.12 -1.76 6.00 -26.72 -0.16 -1.93 16 17 C -0.12 -1.59 6.01 -26.55 -0.16 -1.75 16 18 C -0.07 -0.92 5.78 -26.49 -0.15 -1.07 16 19 C 0.06 0.87 2.30 -131.61 -0.30 0.56 16 20 C -0.19 -2.57 9.32 -26.81 -0.25 -2.82 16 21 C -0.22 -3.34 9.45 -26.79 -0.25 -3.60 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.77 5.03 -51.93 -0.26 0.51 16 24 H 0.05 0.77 8.03 -51.93 -0.42 0.35 16 25 H 0.06 1.25 6.13 -51.93 -0.32 0.93 16 26 H 0.05 1.12 7.83 -51.93 -0.41 0.71 16 27 H 0.01 0.26 7.97 -51.93 -0.41 -0.16 16 28 H 0.04 0.95 4.46 -51.93 -0.23 0.72 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.09 1.78 5.47 -51.93 -0.28 1.50 16 31 H 0.06 1.30 5.68 -51.93 -0.29 1.01 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.49 4.32 -51.93 -0.22 1.27 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.80 6.02 -51.93 -0.31 1.48 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -29.08 300.47 -9.22 -38.30 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.74 Total: 2.52 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -1.74 Total: -26.74 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.25 Total: -35.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.08 -9.22 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.702 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds